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access;
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	RELEASE_6_EOL:1.16
	RELEASE_8_1_0:1.15
	RELEASE_7_3_0:1.15
	RELEASE_8_0_0:1.13
	RELEASE_7_2_0:1.13
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	RELEASE_6_4_0:1.13
	RELEASE_5_EOL:1.13
	RELEASE_7_0_0:1.8
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	PRE_XORG_7:1.8
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	RELEASE_4_1_1:1.1
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comment	@# @;


1.19
date	2012.11.17.05.54.51;	author svnexp;	state Exp;
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desc
@@


1.19
log
@Switch exporter over
@
text
@# New ports collection makefile for:	clustalw
# Date created:				6 July 2000
# Whom:					dbader@@eece.unm.edu
#
# $FreeBSD: head/biology/clustalw/Makefile 300895 2012-07-14 12:56:14Z beat $
#

PORTNAME=	clustalw
PORTVERSION=	2.1
PORTREVISION=	1
CATEGORIES=	biology
MASTER_SITES=	ftp://ftp.ebi.ac.uk/pub/software/clustalw2/%SUBDIR%/ \
		http://www.clustal.org/download/%SUBDIR%/
MASTER_SITE_SUBDIR=	${PORTVERSION}

MAINTAINER=	wen@@FreeBSD.org
COMMENT=	A multiple alignment program for DNA or proteins

RESTRICTED=	No commercial use.

WRKSRC=		${WRKDIR}/${PORTNAME}-${PORTVERSION}

GNU_CONFIGURE=	yes

PLIST_FILES=	bin/clustalw bin/clustalw2

post-install:
	${LN} -sf clustalw2 ${PREFIX}/bin/clustalw

.include <bsd.port.mk>
@


1.18
log
@Remove USE_GNOME=gnometarget from ports. It has been a empty keyword since
mid 2008.

PR:		ports/159624
Submitted by:	Ruslan Mahmatkhanov <cvs-src@@yandex.ru>
@
text
@d5 1
a5 1
# $FreeBSD$
@


1.17
log
@- Fix fetch

Reported by:	QAT@@
@
text
@a22 1
USE_GNOME=	gnometarget
@


1.16
log
@- Update to 2.1
@
text
@d10 1
@


1.15
log
@- Fix fetch error
@
text
@d9 1
a9 1
PORTVERSION=	2.0.12
@


1.14
log
@- Update to 2.0.12
- Update my mail address to FreeBSD
@
text
@d11 2
a12 2
MASTER_SITES=	http://www.clustal.org/download/%SUBDIR%/ \
		ftp://ftp.ebi.ac.uk/pub/software/clustalw2/
@


1.13
log
@- Update to 2.0.6
- Pass maintainership to submitter

PR:		123193
Submitted by:	Wen heping <wenheping@@gmail.com>
@
text
@d9 1
a9 1
PORTVERSION=	2.0.6
a13 1
DISTNAME=	${PORTNAME}-${PORTVERSION}-src
d15 1
a15 1
MAINTAINER=	wenheping@@gmail.com
@


1.12
log
@- Update to 2.0.5
- Add RESTRICTED due to non-commercial use licence.

PR:		ports/121794
Submitted by:	KATO Tsuguru <tkato432@@yahoo.com>
Approved by:	thierry and tabthorpe (mentors)
@
text
@d9 1
a9 1
PORTVERSION=	2.0.5
d16 1
a16 1
MAINTAINER=	ports@@FreeBSD.org
@


1.11
log
@- Restore clustalw symlink, other ports rely on it

Reported by:	pointyhat
Pointy hat to:	pav
@
text
@d9 1
a9 2
PORTVERSION=	2.0.3
PORTREVISION=	1
d11 3
a13 1
MASTER_SITES=	ftp://ftp.ebi.ac.uk/pub/software/clustalw2/
d17 1
a17 1
COMMENT=	CLUSTAL W Multiple Sequence Alignment Program
d19 5
a24 1
WRKSRC=		${WRKDIR}/${PORTNAME}-${PORTVERSION}
@


1.10
log
@- Update to 2.0.3
@
text
@d10 1
d21 4
a24 1
PLIST_FILES=	bin/clustalw2
@


1.9
log
@- Update to 2.0

PR:		ports/117713
Submitted by:	Motomichi Matsuzaki <mzaki@@e-mail.ne.jp>
@
text
@d9 1
a9 1
PORTVERSION=	2.0
d12 1
a12 1
DISTNAME=	${PORTNAME}-linux-src-${PORTVERSION}
d17 2
a18 1
WRKSRC=		${WRKDIR}/${PORTNAME}${PORTVERSION}
d20 1
a20 7
ALL_TARGET=	# empty

do-install:
	${INSTALL_PROGRAM} ${WRKSRC}/clustalw2 ${PREFIX}/bin
	${LN} -sf clustalw2 ${PREFIX}/bin/clustalw
	@@${MKDIR} ${DATADIR}
	${INSTALL_DATA} ${WRKSRC}/clustalw_help ${DATADIR}
@


1.8
log
@Reset dbader@@eece.unm.edu due to maintainer-timeout.  While here, fix fetch.
@
text
@d9 1
a9 1
PORTVERSION=	1.83
d11 2
a12 2
MASTER_SITES=	ftp://ftp.ebi.ac.uk/pub/software/unix/clustalw/
DISTNAME=	${PORTNAME}${PORTVERSION}.UNIX
a18 1
MAKEFILE=	makefile
d22 2
a23 1
	${INSTALL_PROGRAM} ${WRKSRC}/clustalw ${PREFIX}/bin
@


1.7
log
@Update to 1.83.

PR:		48264
Submitted by:	David A. Bader <dbader@@eece.unm.edu>
@
text
@d11 1
a11 1
MASTER_SITES=	ftp://ftp-igbmc.u-strasbg.fr/pub/ClustalW/
d14 1
a14 1
MAINTAINER=	dbader@@eece.unm.edu
@


1.6
log
@- Add a new patch
- Bump $PORTREVISION

PR:		36206
Submitted by:	David A. Bader <dbader@@eece.unm.edu> (MAINTAINER)
@
text
@d9 1
a9 2
PORTVERSION=	1.82
PORTREVISION=	2
d15 1
@


1.5
log
@- Fix certain mistakes in FreeBSD patches
- Bump PORTREVISION
- Poroblem originally reported by Fernan Aguero <fernan@@iib.unsam.edu.ar> on
  FreeBSD-bio list

PR:		36169
Submitted by:	David A. Bader <dbader@@eece.unm.edu> (MAINTAINER)
@
text
@d10 1
a10 1
PORTREVISION=	1
@


1.4
log
@${PREFIX}/share/${PORTNAME} --> ${DATADIR}
@
text
@d10 1
@


1.3
log
@Update to version 1.82

PR:		28609
Submitted by:	David A. Bader <dbader@@eece.unm.edu> (MAINTAINER)
@
text
@d5 1
a5 1
# $FreeBSD: ports/biology/clustalw/Makefile,v 1.2 2000/10/03 01:10:19 jeh Exp $
d23 2
a24 2
	@@${MKDIR} ${PREFIX}/share/${PORTNAME}
	${INSTALL_DATA} ${WRKSRC}/clustalw_help ${PREFIX}/share/${PORTNAME}
@


1.2
log
@- Support CC/CFLAGS/PREFIX properly
- gets() -> fgets()
- Add WWW: line into pkg/DESCR

Also bumped PORTREVISION to 1

PR:		21572
Submitted by:	tkato@@prontomail.ne.jp <KATO@@FreeBSD.ORG, Tsuguru@@FreeBSD.ORG>
Reviewed by:	will
Approved by:	MAINTAINER (dbader@@eece.unm.edu)
@
text
@d5 1
a5 1
# $FreeBSD: ports/biology/clustalw/Makefile,v 1.1 2000/07/10 03:17:36 steve Exp $
d9 1
a9 1
PORTVERSION=	1.81
a15 1
PORTREVISION=	1
@


1.1
log
@Adding clustalw version 1.81.
A CLUSTAL W Multiple Sequence Alignment Program.

PR:		19746
Submitted by:	David A. Bader <dbader@@cielo.eece.unm.edu>
@
text
@d5 1
a5 1
# $FreeBSD$
d12 1
a12 1
DISTNAME=	clustalw1.81.UNIX
d16 1
d19 2
a20 2
do-build:
		cd ${WRKSRC} ; ${MAKE} -f makefile
d23 3
a25 3
		${INSTALL_PROGRAM} ${WRKSRC}/clustalw ${PREFIX}/bin
		${MKDIR} ${PREFIX}/share/${PORTNAME}
		${INSTALL_DATA} ${WRKSRC}/clustalw_help ${PREFIX}/share/${PORTNAME}
@

