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	RELEASE_8_1_0:1.6
	RELEASE_7_3_0:1.5
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locks; strict;
comment	@# @;


1.6
date	2010.04.07.01.21.36;	author wen;	state Exp;
branches;
next	1.5;

1.5
date	2009.06.16.22.42.34;	author amdmi3;	state Exp;
branches;
next	1.4;

1.4
date	2008.04.13.07.22.42;	author rafan;	state Exp;
branches;
next	1.3;

1.3
date	2006.03.31.09.43.21;	author thierry;	state Exp;
branches;
next	1.2;

1.2
date	2005.05.29.18.26.25;	author pav;	state Exp;
branches;
next	1.1;

1.1
date	2004.11.26.16.34.22;	author sem;	state Exp;
branches;
next	;


desc
@@


1.6
log
@- Update to 6.2.0

Submitted by:	Wen Heping(myself)
Approved by:	maintainer(via Email)
@
text
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%%PLIST_DOMAINATRIX%%share/EMBOSS/doc/programs/text/ssematch.txt
%%PLIST_DOMAINATRIX%%share/EMBOSS/doc/html/embassy/domainatrix/index.html
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%%PLIST_DOMAINATRIX%%share/EMBOSS/doc/html/embassy/domainatrix/domainreso.html
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%%PLIST_DOMAINATRIX%%share/EMBOSS/doc/html/embassy/domainatrix/scopparse.html
%%PLIST_DOMAINATRIX%%share/EMBOSS/doc/html/embassy/domainatrix/ssematch.html
%%PLIST_DOMAINATRIX%%bin/cathparse
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%%PLIST_DOMAINATRIX%%bin/scopparse
%%PLIST_DOMAINATRIX%%bin/ssematch
%%PLIST_DOMAINATRIX%%@@dirrm share/EMBOSS/doc/html/embassy/domainatrix
%%PLIST_DOMALIGN%%share/EMBOSS/acd/allversusall.acd
%%PLIST_DOMALIGN%%share/EMBOSS/acd/domainalign.acd
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%%PLIST_DOMALIGN%%share/EMBOSS/doc/programs/text/allversusall.txt
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%%PLIST_DOMALIGN%%share/EMBOSS/doc/html/embassy/domalign/index.html
%%PLIST_DOMALIGN%%share/EMBOSS/doc/html/embassy/domalign/allversusall.html
%%PLIST_DOMALIGN%%share/EMBOSS/doc/html/embassy/domalign/domainalign.html
%%PLIST_DOMALIGN%%share/EMBOSS/doc/html/embassy/domalign/domainrep.html
%%PLIST_DOMALIGN%%share/EMBOSS/doc/html/embassy/domalign/seqalign.html
%%PLIST_DOMALIGN%%@@dirrm share/EMBOSS/doc/html/embassy/domalign
%%PLIST_DOMALIGN%%bin/allversusall
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%%PLIST_DOMSEARCH%%share/EMBOSS/doc/html/embassy/domsearch/index.html
%%PLIST_DOMSEARCH%%share/EMBOSS/doc/html/embassy/domsearch/seqfraggle.html
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%%PLIST_DOMSEARCH%%share/EMBOSS/doc/html/embassy/domsearch/seqsearch.html
%%PLIST_DOMSEARCH%%share/EMBOSS/doc/html/embassy/domsearch/seqsort.html
%%PLIST_DOMSEARCH%%share/EMBOSS/doc/html/embassy/domsearch/seqwords.html
%%PLIST_DOMSEARCH%%@@dirrm share/EMBOSS/doc/html/embassy/domsearch
%%PLIST_DOMSEARCH%%bin/seqnr
%%PLIST_DOMSEARCH%%bin/seqsearch
%%PLIST_DOMSEARCH%%bin/seqfraggle
%%PLIST_DOMSEARCH%%bin/seqsort
%%PLIST_DOMSEARCH%%bin/seqwords
%%PLIST_SIGNATURE%%share/EMBOSS/acd/libgen.acd
%%PLIST_SIGNATURE%%share/EMBOSS/acd/matgen3d.acd
%%PLIST_SIGNATURE%%share/EMBOSS/acd/rocplot.acd
%%PLIST_SIGNATURE%%share/EMBOSS/acd/rocon.acd
%%PLIST_SIGNATURE%%share/EMBOSS/acd/siggen.acd
%%PLIST_SIGNATURE%%share/EMBOSS/acd/siggenlig.acd
%%PLIST_SIGNATURE%%share/EMBOSS/acd/sigscan.acd
%%PLIST_SIGNATURE%%share/EMBOSS/acd/sigscanlig.acd
%%PLIST_SIGNATURE%%share/EMBOSS/doc/programs/text/libgen.txt
%%PLIST_SIGNATURE%%share/EMBOSS/doc/programs/text/matgen3d.txt
%%PLIST_SIGNATURE%%share/EMBOSS/doc/programs/text/rocon.txt
%%PLIST_SIGNATURE%%share/EMBOSS/doc/programs/text/rocplot.txt
%%PLIST_SIGNATURE%%share/EMBOSS/doc/programs/text/siggen.txt
%%PLIST_SIGNATURE%%share/EMBOSS/doc/programs/text/siggenlig.txt
%%PLIST_SIGNATURE%%share/EMBOSS/doc/programs/text/sigscan.txt
%%PLIST_SIGNATURE%%share/EMBOSS/doc/programs/text/sigscanlig.txt
%%PLIST_SIGNATURE%%share/EMBOSS/doc/html/embassy/signature/index.html
%%PLIST_SIGNATURE%%share/EMBOSS/doc/html/embassy/signature/libgen.html
%%PLIST_SIGNATURE%%share/EMBOSS/doc/html/embassy/signature/matgen3d.html
%%PLIST_SIGNATURE%%share/EMBOSS/doc/html/embassy/signature/rocon.html
%%PLIST_SIGNATURE%%share/EMBOSS/doc/html/embassy/signature/rocplot.html
%%PLIST_SIGNATURE%%share/EMBOSS/doc/html/embassy/signature/siggen.html
%%PLIST_SIGNATURE%%share/EMBOSS/doc/html/embassy/signature/siggenlig.html
%%PLIST_SIGNATURE%%share/EMBOSS/doc/html/embassy/signature/sigscan.html
%%PLIST_SIGNATURE%%share/EMBOSS/doc/html/embassy/signature/sigscanlig.html
%%PLIST_SIGNATURE%%@@dirrm share/EMBOSS/doc/html/embassy/signature
%%PLIST_SIGNATURE%%bin/libgen
%%PLIST_SIGNATURE%%bin/matgen3d
%%PLIST_SIGNATURE%%bin/rocplot
%%PLIST_SIGNATURE%%bin/rocon
%%PLIST_SIGNATURE%%bin/siggen
%%PLIST_SIGNATURE%%bin/siggenlig
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%%PLIST_STRUCTURE%%share/EMBOSS/acd/contacts.acd
%%PLIST_STRUCTURE%%share/EMBOSS/acd/domainer.acd
%%PLIST_STRUCTURE%%share/EMBOSS/acd/hetparse.acd
%%PLIST_STRUCTURE%%share/EMBOSS/acd/interface.acd
%%PLIST_STRUCTURE%%share/EMBOSS/acd/pdbparse.acd
%%PLIST_STRUCTURE%%share/EMBOSS/acd/pdbplus.acd
%%PLIST_STRUCTURE%%share/EMBOSS/acd/pdbtosp.acd
%%PLIST_STRUCTURE%%share/EMBOSS/acd/sites.acd
%%PLIST_STRUCTURE%%share/EMBOSS/doc/programs/text/contacts.txt
%%PLIST_STRUCTURE%%share/EMBOSS/doc/programs/text/domainer.txt
%%PLIST_STRUCTURE%%share/EMBOSS/doc/programs/text/hetparse.txt
%%PLIST_STRUCTURE%%share/EMBOSS/doc/programs/text/interface.txt
%%PLIST_STRUCTURE%%share/EMBOSS/doc/programs/text/pdbparse.txt
%%PLIST_STRUCTURE%%share/EMBOSS/doc/programs/text/pdbplus.txt
%%PLIST_STRUCTURE%%share/EMBOSS/doc/programs/text/pdbtosp.txt
%%PLIST_STRUCTURE%%share/EMBOSS/doc/programs/text/sites.txt
%%PLIST_STRUCTURE%%share/EMBOSS/doc/html/embassy/structure/index.html
%%PLIST_STRUCTURE%%share/EMBOSS/doc/html/embassy/structure/contacts.html
%%PLIST_STRUCTURE%%share/EMBOSS/doc/html/embassy/structure/domainer.html
%%PLIST_STRUCTURE%%share/EMBOSS/doc/html/embassy/structure/hetparse.html
%%PLIST_STRUCTURE%%share/EMBOSS/doc/html/embassy/structure/interface.html
%%PLIST_STRUCTURE%%share/EMBOSS/doc/html/embassy/structure/pdbparse.html
%%PLIST_STRUCTURE%%share/EMBOSS/doc/html/embassy/structure/pdbplus.html
%%PLIST_STRUCTURE%%share/EMBOSS/doc/html/embassy/structure/pdbtosp.html
%%PLIST_STRUCTURE%%share/EMBOSS/doc/html/embassy/structure/sites.html
%%PLIST_STRUCTURE%%@@dirrm share/EMBOSS/doc/html/embassy/structure
%%PLIST_STRUCTURE%%bin/contacts
%%PLIST_STRUCTURE%%bin/domainer
%%PLIST_STRUCTURE%%bin/hetparse
%%PLIST_STRUCTURE%%bin/interface
%%PLIST_STRUCTURE%%bin/pdbparse
%%PLIST_STRUCTURE%%bin/pdbplus
%%PLIST_STRUCTURE%%bin/pdbtosp
%%PLIST_STRUCTURE%%bin/sites
%%PLIST_EMNU%%share/EMBOSS/acd/emnu.acd
%%PLIST_EMNU%%share/EMBOSS/doc/programs/text/emnu.txt
%%PLIST_EMNU%%share/EMBOSS/doc/html/embassy/emnu/index.html
%%PLIST_EMNU%%share/EMBOSS/doc/html/embassy/emnu/emnu.html
%%PLIST_EMNU%%@@dirrm share/EMBOSS/doc/html/embassy/emnu
%%PLIST_EMNU%%bin/emnu
%%PLIST_ESIM4%%share/EMBOSS/acd/esim4.acd
%%PLIST_ESIM4%%share/EMBOSS/doc/programs/text/esim4.txt
%%PLIST_ESIM4%%share/EMBOSS/doc/html/embassy/esim4/index.html
%%PLIST_ESIM4%%share/EMBOSS/doc/html/embassy/esim4/esim4.html
%%PLIST_ESIM4%%@@dirrm share/EMBOSS/doc/html/embassy/esim4
%%PLIST_ESIM4%%bin/esim4
%%PLIST_HMMER%%share/EMBOSS/acd/ehmmcalibrate.acd
%%PLIST_HMMER%%share/EMBOSS/acd/ehmmconvert.acd
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%%PLIST_HMMER%%share/EMBOSS/acd/ehmmpfam.acd
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%%PLIST_HMMER%%share/EMBOSS/doc/programs/text/ehmmalign.txt
%%PLIST_HMMER%%share/EMBOSS/doc/programs/text/ehmmbuild.txt
%%PLIST_HMMER%%share/EMBOSS/doc/programs/text/ehmmcalibrate.txt
%%PLIST_HMMER%%share/EMBOSS/doc/programs/text/ehmmconvert.txt
%%PLIST_HMMER%%share/EMBOSS/doc/programs/text/ehmmemit.txt
%%PLIST_HMMER%%share/EMBOSS/doc/programs/text/ehmmfetch.txt
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%%PLIST_HMMER%%share/EMBOSS/doc/html/embassy/hmmernew/index.html
%%PLIST_HMMER%%share/EMBOSS/doc/html/embassy/hmmernew/ehmmalign.html
%%PLIST_HMMER%%share/EMBOSS/doc/html/embassy/hmmernew/ehmmbuild.html
%%PLIST_HMMER%%share/EMBOSS/doc/html/embassy/hmmernew/ehmmcalibrate.html
%%PLIST_HMMER%%share/EMBOSS/doc/html/embassy/hmmernew/ehmmconvert.html
%%PLIST_HMMER%%share/EMBOSS/doc/html/embassy/hmmernew/ehmmemit.html
%%PLIST_HMMER%%share/EMBOSS/doc/html/embassy/hmmernew/ehmmfetch.html
%%PLIST_HMMER%%share/EMBOSS/doc/html/embassy/hmmernew/ehmmindex.html
%%PLIST_HMMER%%share/EMBOSS/doc/html/embassy/hmmernew/ehmmpfam.html
%%PLIST_HMMER%%share/EMBOSS/doc/html/embassy/hmmernew/ehmmsearch.html
%%PLIST_HMMER%%@@dirrm share/EMBOSS/doc/html/embassy/hmmernew
%%PLIST_HMMER%%bin/ehmmcalibrate
%%PLIST_HMMER%%bin/ehmmconvert
%%PLIST_HMMER%%bin/ehmmemit
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%%PLIST_MEMENEW%%share/EMBOSS/acd/emast.acd
%%PLIST_MEMENEW%%share/EMBOSS/acd/ememe.acd
%%PLIST_MEMENEW%%share/EMBOSS/acd/ememetext.acd
%%PLIST_MEMENEW%%share/EMBOSS/doc/programs/text/emast.txt
%%PLIST_MEMENEW%%share/EMBOSS/doc/programs/text/ememe.txt
%%PLIST_MEMENEW%%share/EMBOSS/doc/programs/text/ememetext.txt
%%PLIST_MEMENEW%%share/EMBOSS/doc/html/embassy/memenew/index.html
%%PLIST_MEMENEW%%share/EMBOSS/doc/html/embassy/memenew/emast.html
%%PLIST_MEMENEW%%share/EMBOSS/doc/html/embassy/memenew/ememe.html
%%PLIST_MEMENEW%%share/EMBOSS/doc/html/embassy/memenew/ememetext.html
%%PLIST_MEMENEW%%@@dirrm share/EMBOSS/doc/html/embassy/memenew
%%PLIST_MEMENEW%%bin/emast
%%PLIST_MEMENEW%%bin/ememe
%%PLIST_MEMENEW%%bin/ememetext
%%PLIST_MSE%%share/EMBOSS/acd/mse.acd
%%PLIST_MSE%%share/EMBOSS/doc/programs/text/mse.txt
%%PLIST_MSE%%share/EMBOSS/doc/html/embassy/mse/index.html
%%PLIST_MSE%%share/EMBOSS/doc/html/embassy/mse/mse.html
%%PLIST_MSE%%@@dirrm share/EMBOSS/doc/html/embassy/mse
%%PLIST_MSE%%lib/libckit.so.1
%%PLIST_MSE%%lib/libckit.so
%%PLIST_MSE%%lib/libckit.la
%%PLIST_MSE%%lib/libckit.a
%%PLIST_MSE%%bin/mse
%%PLIST_PHYLIPNEW%%share/EMBOSS/acd/fclique.acd
%%PLIST_PHYLIPNEW%%share/EMBOSS/acd/fconsense.acd
%%PLIST_PHYLIPNEW%%share/EMBOSS/acd/fcontml.acd
%%PLIST_PHYLIPNEW%%share/EMBOSS/acd/fcontrast.acd
%%PLIST_PHYLIPNEW%%share/EMBOSS/acd/fdiscboot.acd
%%PLIST_PHYLIPNEW%%share/EMBOSS/acd/fdnacomp.acd
%%PLIST_PHYLIPNEW%%share/EMBOSS/acd/fdnadist.acd
%%PLIST_PHYLIPNEW%%share/EMBOSS/acd/fdnainvar.acd
%%PLIST_PHYLIPNEW%%share/EMBOSS/acd/fdnaml.acd
%%PLIST_PHYLIPNEW%%share/EMBOSS/acd/fdnamlk.acd
%%PLIST_PHYLIPNEW%%share/EMBOSS/acd/fdnamove.acd
%%PLIST_PHYLIPNEW%%share/EMBOSS/acd/fdnapars.acd
%%PLIST_PHYLIPNEW%%share/EMBOSS/acd/fdnapenny.acd
%%PLIST_PHYLIPNEW%%share/EMBOSS/acd/fdollop.acd
%%PLIST_PHYLIPNEW%%share/EMBOSS/acd/fdolmove.acd
%%PLIST_PHYLIPNEW%%share/EMBOSS/acd/fdolpenny.acd
%%PLIST_PHYLIPNEW%%share/EMBOSS/acd/fdrawgram.acd
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%%PLIST_PHYLIPNEW%%share/EMBOSS/acd/ffactor.acd
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%%PLIST_PHYLIPNEW%%share/EMBOSS/acd/ffreqboot.acd
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%%PLIST_PHYLIPNEW%%share/EMBOSS/acd/fmix.acd
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%%PLIST_PHYLIPNEW%%share/EMBOSS/acd/fproml.acd
%%PLIST_PHYLIPNEW%%share/EMBOSS/acd/fpromlk.acd
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%%PLIST_PHYLIPNEW%%share/EMBOSS/acd/frestboot.acd
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%%PLIST_PHYLIPNEW%%share/EMBOSS/acd/frestml.acd
%%PLIST_PHYLIPNEW%%share/EMBOSS/acd/fretree.acd
%%PLIST_PHYLIPNEW%%share/EMBOSS/acd/fseqboot.acd
%%PLIST_PHYLIPNEW%%share/EMBOSS/acd/fseqbootall.acd
%%PLIST_PHYLIPNEW%%share/EMBOSS/acd/ftreedist.acd
%%PLIST_PHYLIPNEW%%share/EMBOSS/acd/ftreedistpair.acd
%%PLIST_PHYLIPNEW%%share/EMBOSS/doc/programs/text/fclique.txt
%%PLIST_PHYLIPNEW%%share/EMBOSS/doc/programs/text/fconsense.txt
%%PLIST_PHYLIPNEW%%share/EMBOSS/doc/programs/text/fcontml.txt
%%PLIST_PHYLIPNEW%%share/EMBOSS/doc/programs/text/fcontrast.txt
%%PLIST_PHYLIPNEW%%share/EMBOSS/doc/programs/text/fdiscboot.txt
%%PLIST_PHYLIPNEW%%share/EMBOSS/doc/programs/text/fdolmove.txt
%%PLIST_PHYLIPNEW%%share/EMBOSS/doc/programs/text/frestdist.txt
%%PLIST_PHYLIPNEW%%share/EMBOSS/doc/programs/text/fdnacomp.txt
%%PLIST_PHYLIPNEW%%share/EMBOSS/doc/programs/text/fdnadist.txt
%%PLIST_PHYLIPNEW%%share/EMBOSS/doc/programs/text/fdnainvar.txt
%%PLIST_PHYLIPNEW%%share/EMBOSS/doc/programs/text/fdnaml.txt
%%PLIST_PHYLIPNEW%%share/EMBOSS/doc/programs/text/fdnamlk.txt
%%PLIST_PHYLIPNEW%%share/EMBOSS/doc/programs/text/fdnamove.txt
%%PLIST_PHYLIPNEW%%share/EMBOSS/doc/programs/text/fdnapars.txt
%%PLIST_PHYLIPNEW%%share/EMBOSS/doc/programs/text/fdnapenny.txt
%%PLIST_PHYLIPNEW%%share/EMBOSS/doc/programs/text/fdollop.txt
%%PLIST_PHYLIPNEW%%share/EMBOSS/doc/programs/text/fdolpenny.txt
%%PLIST_PHYLIPNEW%%share/EMBOSS/doc/programs/text/fdrawgram.txt
%%PLIST_PHYLIPNEW%%share/EMBOSS/doc/programs/text/fdrawtree.txt
%%PLIST_PHYLIPNEW%%share/EMBOSS/doc/programs/text/ffactor.txt
%%PLIST_PHYLIPNEW%%share/EMBOSS/doc/programs/text/ffitch.txt
%%PLIST_PHYLIPNEW%%share/EMBOSS/doc/programs/text/ffreqboot.txt
%%PLIST_PHYLIPNEW%%share/EMBOSS/doc/programs/text/fgendist.txt
%%PLIST_PHYLIPNEW%%share/EMBOSS/doc/programs/text/fkitsch.txt
%%PLIST_PHYLIPNEW%%share/EMBOSS/doc/programs/text/fmix.txt
%%PLIST_PHYLIPNEW%%share/EMBOSS/doc/programs/text/fmove.txt
%%PLIST_PHYLIPNEW%%share/EMBOSS/doc/programs/text/fneighbor.txt
%%PLIST_PHYLIPNEW%%share/EMBOSS/doc/programs/text/fpars.txt
%%PLIST_PHYLIPNEW%%share/EMBOSS/doc/programs/text/fpenny.txt
%%PLIST_PHYLIPNEW%%share/EMBOSS/doc/programs/text/fproml.txt
%%PLIST_PHYLIPNEW%%share/EMBOSS/doc/programs/text/fpromlk.txt
%%PLIST_PHYLIPNEW%%share/EMBOSS/doc/programs/text/fprotdist.txt
%%PLIST_PHYLIPNEW%%share/EMBOSS/doc/programs/text/fprotpars.txt
%%PLIST_PHYLIPNEW%%share/EMBOSS/doc/programs/text/frestboot.txt
%%PLIST_PHYLIPNEW%%share/EMBOSS/doc/programs/text/frestml.txt
%%PLIST_PHYLIPNEW%%share/EMBOSS/doc/programs/text/fretree.txt
%%PLIST_PHYLIPNEW%%share/EMBOSS/doc/programs/text/fseqboot.txt
%%PLIST_PHYLIPNEW%%share/EMBOSS/doc/programs/text/fseqbootall.txt
%%PLIST_PHYLIPNEW%%share/EMBOSS/doc/programs/text/ftreedist.txt
%%PLIST_PHYLIPNEW%%share/EMBOSS/doc/programs/text/ftreedistpair.txt
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@@dirrm share/EMBOSS/doc/html/embassy
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@


1.5
log
@- Update to 6.0.0
- Unbreak

PR:		135376
Submitted by:	Fernan Aguero <fernan@@iib.unsam.edu.ar> (maintainer)
@
text
@d191 1
d194 1
d198 1
d202 1
d258 2
d265 1
d299 3
d387 1
d465 2
d468 2
d471 22
@


1.4
log
@- Update to 5.0.0

PR:		ports/122437
Submitted by:	Fernan Aguero <fernan at iib.unsam.edu.ar> (maintainer)
@
text
@a0 7
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a70 249
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%%PLIST_MYEMBOSS%%bin/myseq
%%PLIST_MYEMBOSS%%bin/mytest
%%PLIST_MYEMBOSS%%share/EMBOSS/acd/myseq.acd
%%PLIST_MYEMBOSS%%share/EMBOSS/acd/mytest.acd
%%PLIST_MYEMBOSS%%share/EMBOSS/doc/html/embassy/myseq/index.html
%%PLIST_MYEMBOSS%%share/EMBOSS/doc/html/embassy/myseq/myseq.html
%%PLIST_MYEMBOSS%%share/EMBOSS/doc/programs/text/myseq.txt
%%PLIST_PHYLIP%%bin/fclique
%%PLIST_PHYLIP%%bin/fconsense
%%PLIST_PHYLIP%%bin/fcontml
%%PLIST_PHYLIP%%bin/fcontrast
%%PLIST_PHYLIP%%bin/fdnacomp
%%PLIST_PHYLIP%%bin/fdnadist
%%PLIST_PHYLIP%%bin/fdnainvar
%%PLIST_PHYLIP%%bin/fdnaml
%%PLIST_PHYLIP%%bin/fdnamlk
%%PLIST_PHYLIP%%bin/fdnamove
%%PLIST_PHYLIP%%bin/fdnapars
%%PLIST_PHYLIP%%bin/fdnapenny
%%PLIST_PHYLIP%%bin/fdolmove
%%PLIST_PHYLIP%%bin/fdollop
%%PLIST_PHYLIP%%bin/fdolpenny
%%PLIST_PHYLIP%%bin/fdrawgram
%%PLIST_PHYLIP%%bin/fdrawtree
%%PLIST_PHYLIP%%bin/ffactor
%%PLIST_PHYLIP%%bin/ffitch
%%PLIST_PHYLIP%%bin/fgendist
%%PLIST_PHYLIP%%bin/fkitsch
%%PLIST_PHYLIP%%bin/fmix
%%PLIST_PHYLIP%%bin/fmove
%%PLIST_PHYLIP%%bin/fneighbor
%%PLIST_PHYLIP%%bin/fpars
%%PLIST_PHYLIP%%bin/fpenny
%%PLIST_PHYLIP%%bin/fproml
%%PLIST_PHYLIP%%bin/fpromlk
%%PLIST_PHYLIP%%bin/fprotdist
%%PLIST_PHYLIP%%bin/fprotpars
%%PLIST_PHYLIP%%bin/frestdist
%%PLIST_PHYLIP%%bin/frestml
%%PLIST_PHYLIP%%bin/fretree
%%PLIST_PHYLIP%%bin/fdiscboot
%%PLIST_PHYLIP%%bin/ffreqboot
%%PLIST_PHYLIP%%bin/frestboot
%%PLIST_PHYLIP%%bin/fseqboot
%%PLIST_PHYLIP%%bin/fseqbootall
%%PLIST_PHYLIP%%bin/ftreedist
%%PLIST_PHYLIP%%bin/ftreedistpair
%%PLIST_PHYLIP%%share/EMBOSS/acd/fclique.acd
%%PLIST_PHYLIP%%share/EMBOSS/acd/fconsense.acd
%%PLIST_PHYLIP%%share/EMBOSS/acd/fcontml.acd
%%PLIST_PHYLIP%%share/EMBOSS/acd/fcontrast.acd
%%PLIST_PHYLIP%%share/EMBOSS/acd/fdiscboot.acd
%%PLIST_PHYLIP%%share/EMBOSS/acd/fdnacomp.acd
%%PLIST_PHYLIP%%share/EMBOSS/acd/fdnadist.acd
%%PLIST_PHYLIP%%share/EMBOSS/acd/fdnainvar.acd
%%PLIST_PHYLIP%%share/EMBOSS/acd/fdnaml.acd
%%PLIST_PHYLIP%%share/EMBOSS/acd/fdnamlk.acd
%%PLIST_PHYLIP%%share/EMBOSS/acd/fdnamove.acd
%%PLIST_PHYLIP%%share/EMBOSS/acd/fdnapars.acd
%%PLIST_PHYLIP%%share/EMBOSS/acd/fdnapenny.acd
%%PLIST_PHYLIP%%share/EMBOSS/acd/fdollop.acd
%%PLIST_PHYLIP%%share/EMBOSS/acd/fdolmove.acd
%%PLIST_PHYLIP%%share/EMBOSS/acd/fdolpenny.acd
%%PLIST_PHYLIP%%share/EMBOSS/acd/fdrawgram.acd
%%PLIST_PHYLIP%%share/EMBOSS/acd/fdrawtree.acd
%%PLIST_PHYLIP%%share/EMBOSS/acd/ffactor.acd
%%PLIST_PHYLIP%%share/EMBOSS/acd/ffitch.acd
%%PLIST_PHYLIP%%share/EMBOSS/acd/ffreqboot.acd
%%PLIST_PHYLIP%%share/EMBOSS/acd/fgendist.acd
%%PLIST_PHYLIP%%share/EMBOSS/acd/fkitsch.acd
%%PLIST_PHYLIP%%share/EMBOSS/acd/fmix.acd
%%PLIST_PHYLIP%%share/EMBOSS/acd/fmove.acd
%%PLIST_PHYLIP%%share/EMBOSS/acd/fneighbor.acd
%%PLIST_PHYLIP%%share/EMBOSS/acd/fpars.acd
%%PLIST_PHYLIP%%share/EMBOSS/acd/fpenny.acd
%%PLIST_PHYLIP%%share/EMBOSS/acd/fproml.acd
%%PLIST_PHYLIP%%share/EMBOSS/acd/fpromlk.acd
%%PLIST_PHYLIP%%share/EMBOSS/acd/fprotdist.acd
%%PLIST_PHYLIP%%share/EMBOSS/acd/fprotpars.acd
%%PLIST_PHYLIP%%share/EMBOSS/acd/frestboot.acd
%%PLIST_PHYLIP%%share/EMBOSS/acd/frestdist.acd
%%PLIST_PHYLIP%%share/EMBOSS/acd/frestml.acd
%%PLIST_PHYLIP%%share/EMBOSS/acd/fretree.acd
%%PLIST_PHYLIP%%share/EMBOSS/acd/fseqboot.acd
%%PLIST_PHYLIP%%share/EMBOSS/acd/fseqbootall.acd
%%PLIST_PHYLIP%%share/EMBOSS/acd/ftreedist.acd
%%PLIST_PHYLIP%%share/EMBOSS/acd/ftreedistpair.acd
%%PLIST_PHYLIP%%share/EMBOSS/doc/html/embassy/phylipnew/index.html
%%PLIST_PHYLIP%%share/EMBOSS/doc/html/embassy/phylipnew/fclique.html
%%PLIST_PHYLIP%%share/EMBOSS/doc/html/embassy/phylipnew/fconsense.html
%%PLIST_PHYLIP%%share/EMBOSS/doc/html/embassy/phylipnew/fcontml.html
%%PLIST_PHYLIP%%share/EMBOSS/doc/html/embassy/phylipnew/fcontrast.html
%%PLIST_PHYLIP%%share/EMBOSS/doc/html/embassy/phylipnew/fdiscboot.html
%%PLIST_PHYLIP%%share/EMBOSS/doc/html/embassy/phylipnew/fdnacomp.html
%%PLIST_PHYLIP%%share/EMBOSS/doc/html/embassy/phylipnew/fdnadist.html
%%PLIST_PHYLIP%%share/EMBOSS/doc/html/embassy/phylipnew/fdnainvar.html
%%PLIST_PHYLIP%%share/EMBOSS/doc/html/embassy/phylipnew/fdnaml.html
%%PLIST_PHYLIP%%share/EMBOSS/doc/html/embassy/phylipnew/fdnamlk.html
%%PLIST_PHYLIP%%share/EMBOSS/doc/html/embassy/phylipnew/fdnapars.html
%%PLIST_PHYLIP%%share/EMBOSS/doc/html/embassy/phylipnew/fdnapenny.html
%%PLIST_PHYLIP%%share/EMBOSS/doc/html/embassy/phylipnew/fdollop.html
%%PLIST_PHYLIP%%share/EMBOSS/doc/html/embassy/phylipnew/fdolpenny.html
%%PLIST_PHYLIP%%share/EMBOSS/doc/html/embassy/phylipnew/fdrawgram.html
%%PLIST_PHYLIP%%share/EMBOSS/doc/html/embassy/phylipnew/fdrawtree.html
%%PLIST_PHYLIP%%share/EMBOSS/doc/html/embassy/phylipnew/ffactor.html
%%PLIST_PHYLIP%%share/EMBOSS/doc/html/embassy/phylipnew/ffitch.html
%%PLIST_PHYLIP%%share/EMBOSS/doc/html/embassy/phylipnew/ffreqboot.html
%%PLIST_PHYLIP%%share/EMBOSS/doc/html/embassy/phylipnew/fmix.html
%%PLIST_PHYLIP%%share/EMBOSS/doc/html/embassy/phylipnew/fgendist.html
%%PLIST_PHYLIP%%share/EMBOSS/doc/html/embassy/phylipnew/fkitsch.html
%%PLIST_PHYLIP%%share/EMBOSS/doc/html/embassy/phylipnew/fmove.html
%%PLIST_PHYLIP%%share/EMBOSS/doc/html/embassy/phylipnew/fneighbor.html
%%PLIST_PHYLIP%%share/EMBOSS/doc/html/embassy/phylipnew/fpars.html
%%PLIST_PHYLIP%%share/EMBOSS/doc/html/embassy/phylipnew/fpenny.html
%%PLIST_PHYLIP%%share/EMBOSS/doc/html/embassy/phylipnew/fproml.html
%%PLIST_PHYLIP%%share/EMBOSS/doc/html/embassy/phylipnew/fpromlk.html
%%PLIST_PHYLIP%%share/EMBOSS/doc/html/embassy/phylipnew/fprotdist.html
%%PLIST_PHYLIP%%share/EMBOSS/doc/html/embassy/phylipnew/fprotpars.html
%%PLIST_PHYLIP%%share/EMBOSS/doc/html/embassy/phylipnew/frestboot.html
%%PLIST_PHYLIP%%share/EMBOSS/doc/html/embassy/phylipnew/frestml.html
%%PLIST_PHYLIP%%share/EMBOSS/doc/html/embassy/phylipnew/fretree.html
%%PLIST_PHYLIP%%share/EMBOSS/doc/html/embassy/phylipnew/fseqboot.html
%%PLIST_PHYLIP%%share/EMBOSS/doc/html/embassy/phylipnew/fseqbootall.html
%%PLIST_PHYLIP%%share/EMBOSS/doc/html/embassy/phylipnew/ftreedist.html
%%PLIST_PHYLIP%%share/EMBOSS/doc/html/embassy/phylipnew/ftreedistpair.html
%%PLIST_PHYLIP%%share/EMBOSS/doc/programs/text/fclique.txt
%%PLIST_PHYLIP%%share/EMBOSS/doc/programs/text/fconsense.txt
%%PLIST_PHYLIP%%share/EMBOSS/doc/programs/text/fcontml.txt
%%PLIST_PHYLIP%%share/EMBOSS/doc/programs/text/fcontrast.txt
%%PLIST_PHYLIP%%share/EMBOSS/doc/programs/text/fdiscboot.txt
%%PLIST_PHYLIP%%share/EMBOSS/doc/programs/text/fdnacomp.txt
%%PLIST_PHYLIP%%share/EMBOSS/doc/programs/text/fdnadist.txt
%%PLIST_PHYLIP%%share/EMBOSS/doc/programs/text/fdnainvar.txt
%%PLIST_PHYLIP%%share/EMBOSS/doc/programs/text/fdnaml.txt
%%PLIST_PHYLIP%%share/EMBOSS/doc/programs/text/fdnamlk.txt
%%PLIST_PHYLIP%%share/EMBOSS/doc/programs/text/fdnapars.txt
%%PLIST_PHYLIP%%share/EMBOSS/doc/programs/text/fdnapenny.txt
%%PLIST_PHYLIP%%share/EMBOSS/doc/programs/text/fdollop.txt
%%PLIST_PHYLIP%%share/EMBOSS/doc/programs/text/fdolpenny.txt
%%PLIST_PHYLIP%%share/EMBOSS/doc/programs/text/fdrawgram.txt
%%PLIST_PHYLIP%%share/EMBOSS/doc/programs/text/fdrawtree.txt
%%PLIST_PHYLIP%%share/EMBOSS/doc/programs/text/ffactor.txt
%%PLIST_PHYLIP%%share/EMBOSS/doc/programs/text/ffitch.txt
%%PLIST_PHYLIP%%share/EMBOSS/doc/programs/text/ffreqboot.txt
%%PLIST_PHYLIP%%share/EMBOSS/doc/programs/text/fgendist.txt
%%PLIST_PHYLIP%%share/EMBOSS/doc/programs/text/fkitsch.txt
%%PLIST_PHYLIP%%share/EMBOSS/doc/programs/text/fmix.txt
%%PLIST_PHYLIP%%share/EMBOSS/doc/programs/text/fmove.txt
%%PLIST_PHYLIP%%share/EMBOSS/doc/programs/text/fneighbor.txt
%%PLIST_PHYLIP%%share/EMBOSS/doc/programs/text/fpars.txt
%%PLIST_PHYLIP%%share/EMBOSS/doc/programs/text/fpenny.txt
%%PLIST_PHYLIP%%share/EMBOSS/doc/programs/text/fproml.txt
%%PLIST_PHYLIP%%share/EMBOSS/doc/programs/text/fpromlk.txt
%%PLIST_PHYLIP%%share/EMBOSS/doc/programs/text/fprotdist.txt
%%PLIST_PHYLIP%%share/EMBOSS/doc/programs/text/fprotpars.txt
%%PLIST_PHYLIP%%share/EMBOSS/doc/programs/text/frestboot.txt
%%PLIST_PHYLIP%%share/EMBOSS/doc/programs/text/frestml.txt
%%PLIST_PHYLIP%%share/EMBOSS/doc/programs/text/fretree.txt
%%PLIST_PHYLIP%%share/EMBOSS/doc/programs/text/fseqboot.txt
%%PLIST_PHYLIP%%share/EMBOSS/doc/programs/text/fseqbootall.txt
%%PLIST_PHYLIP%%share/EMBOSS/doc/programs/text/ftreedist.txt
%%PLIST_PHYLIP%%share/EMBOSS/doc/programs/text/ftreedistpair.txt
%%PLIST_PHYLIP%%share/PHYLIP/data/phylipnew/font1
%%PLIST_PHYLIP%%share/PHYLIP/data/phylipnew/font2
%%PLIST_PHYLIP%%share/PHYLIP/data/phylipnew/font3
%%PLIST_PHYLIP%%share/PHYLIP/data/phylipnew/font4
%%PLIST_PHYLIP%%share/PHYLIP/data/phylipnew/font5
%%PLIST_PHYLIP%%share/PHYLIP/data/phylipnew/font6
%%PLIST_PHYLIP%%@@dirrm share/PHYLIP/data/phylipnew
%%PLIST_PHYLIP%%@@dirrm share/PHYLIP/data
%%PLIST_PHYLIP%%@@dirrm share/PHYLIP
%%PLIST_SIGNATURE%%bin/libgen
%%PLIST_SIGNATURE%%bin/matgen3d
%%PLIST_SIGNATURE%%bin/rocplot
%%PLIST_SIGNATURE%%bin/rocon
%%PLIST_SIGNATURE%%bin/siggen
%%PLIST_SIGNATURE%%bin/siggenlig
%%PLIST_SIGNATURE%%bin/sigscan
%%PLIST_SIGNATURE%%bin/sigscanlig
d79 8
d96 9
a104 16
%%PLIST_SIGNATURE%%share/EMBOSS/doc/programs/text/libgen.txt
%%PLIST_SIGNATURE%%share/EMBOSS/doc/programs/text/matgen3d.txt
%%PLIST_SIGNATURE%%share/EMBOSS/doc/programs/text/rocon.txt
%%PLIST_SIGNATURE%%share/EMBOSS/doc/programs/text/rocplot.txt
%%PLIST_SIGNATURE%%share/EMBOSS/doc/programs/text/siggen.txt
%%PLIST_SIGNATURE%%share/EMBOSS/doc/programs/text/siggenlig.txt
%%PLIST_SIGNATURE%%share/EMBOSS/doc/programs/text/sigscan.txt
%%PLIST_SIGNATURE%%share/EMBOSS/doc/programs/text/sigscanlig.txt
%%PLIST_STRUCTURE%%bin/contacts
%%PLIST_STRUCTURE%%bin/domainer
%%PLIST_STRUCTURE%%bin/hetparse
%%PLIST_STRUCTURE%%bin/interface
%%PLIST_STRUCTURE%%bin/pdbparse
%%PLIST_STRUCTURE%%bin/pdbplus
%%PLIST_STRUCTURE%%bin/pdbtosp
%%PLIST_STRUCTURE%%bin/sites
d113 8
d130 243
a372 9
%%PLIST_STRUCTURE%%share/EMBOSS/doc/programs/text/contacts.txt
%%PLIST_STRUCTURE%%share/EMBOSS/doc/programs/text/domainer.txt
%%PLIST_STRUCTURE%%share/EMBOSS/doc/programs/text/hetparse.txt
%%PLIST_STRUCTURE%%share/EMBOSS/doc/programs/text/interface.txt
%%PLIST_STRUCTURE%%share/EMBOSS/doc/programs/text/pdbparse.txt
%%PLIST_STRUCTURE%%share/EMBOSS/doc/programs/text/pdbplus.txt
%%PLIST_STRUCTURE%%share/EMBOSS/doc/programs/text/pdbtosp.txt
%%PLIST_STRUCTURE%%share/EMBOSS/doc/programs/text/sites.txt
%%PLIST_TOPO%%bin/topo
d374 1
d377 2
a378 17
%%PLIST_TOPO%%share/EMBOSS/doc/programs/text/topo.txt
%%PLIST_VIENNA%%bin/vrnaalifold
%%PLIST_VIENNA%%bin/vrnacofoldpf
%%PLIST_VIENNA%%bin/vrnaevalpair
%%PLIST_VIENNA%%bin/vrnainverse
%%PLIST_VIENNA%%bin/vrnaalifoldpf
%%PLIST_VIENNA%%bin/vrnadistance
%%PLIST_VIENNA%%bin/vrnafold
%%PLIST_VIENNA%%bin/vrnalfold
%%PLIST_VIENNA%%bin/vrnacofold
%%PLIST_VIENNA%%bin/vrnaduplex
%%PLIST_VIENNA%%bin/vrnafoldpf
%%PLIST_VIENNA%%bin/vrnaplot
%%PLIST_VIENNA%%bin/vrnacofoldconc
%%PLIST_VIENNA%%bin/vrnaeval
%%PLIST_VIENNA%%bin/vrnaheat
%%PLIST_VIENNA%%bin/vrnasubopt
d396 16
d429 1
a429 16
%%PLIST_VIENNA%%share/EMBOSS/doc/programs/text/vrnaalifold.txt
%%PLIST_VIENNA%%share/EMBOSS/doc/programs/text/vrnaalifoldpf.txt
%%PLIST_VIENNA%%share/EMBOSS/doc/programs/text/vrnacofold.txt
%%PLIST_VIENNA%%share/EMBOSS/doc/programs/text/vrnacofoldconc.txt
%%PLIST_VIENNA%%share/EMBOSS/doc/programs/text/vrnacofoldpf.txt
%%PLIST_VIENNA%%share/EMBOSS/doc/programs/text/vrnadistance.txt
%%PLIST_VIENNA%%share/EMBOSS/doc/programs/text/vrnaduplex.txt
%%PLIST_VIENNA%%share/EMBOSS/doc/programs/text/vrnaeval.txt
%%PLIST_VIENNA%%share/EMBOSS/doc/programs/text/vrnaevalpair.txt
%%PLIST_VIENNA%%share/EMBOSS/doc/programs/text/vrnafold.txt
%%PLIST_VIENNA%%share/EMBOSS/doc/programs/text/vrnafoldpf.txt
%%PLIST_VIENNA%%share/EMBOSS/doc/programs/text/vrnaheat.txt
%%PLIST_VIENNA%%share/EMBOSS/doc/programs/text/vrnainverse.txt
%%PLIST_VIENNA%%share/EMBOSS/doc/programs/text/vrnalfold.txt
%%PLIST_VIENNA%%share/EMBOSS/doc/programs/text/vrnaplot.txt
%%PLIST_VIENNA%%share/EMBOSS/doc/programs/text/vrnasubopt.txt
d434 45
a478 15
@@dirrmtry share/EMBOSS/doc/html/embassy/vienna
@@dirrmtry share/EMBOSS/doc/html/embassy/topo
@@dirrmtry share/EMBOSS/doc/html/embassy/structure
@@dirrmtry share/EMBOSS/doc/html/embassy/signature
@@dirrmtry share/EMBOSS/doc/html/embassy/phylipnew
@@dirrmtry share/EMBOSS/doc/html/embassy/myseq
@@dirrmtry share/EMBOSS/doc/html/embassy/mse
@@dirrmtry share/EMBOSS/doc/html/embassy/memenew
@@dirrmtry share/EMBOSS/doc/html/embassy/hmmernew
@@dirrmtry share/EMBOSS/doc/html/embassy/esim4
@@dirrmtry share/EMBOSS/doc/html/embassy/emnu
@@dirrmtry share/EMBOSS/doc/html/embassy/domsearch
@@dirrmtry share/EMBOSS/doc/html/embassy/domalign
@@dirrmtry share/EMBOSS/doc/html/embassy/domainatrix
@@dirrmtry share/EMBOSS/doc/html/embassy
@


1.3
log
@For EMBOSS:

	This patch brings EMBOSS up to date with the current version.

	i.   The patches included in files/ are bugfixes for files in
	     EMBOSS-3.0.0 that appeared after the release. They are
   	     documented in ftp://emboss.open-bio.org/pub/EMBOSS/fixes/README

	     This is just 'for the record' so that we remember to remove these
	     patches in the next update.

	ii.  EMBOSS is now installed by default in LOCALBASE/emboss
	     This is to avoid CONFLICTS with other ports that install files
	     with the same names. Installing EMBOSS to another PREFIX is also
	     possible.

	iii. now EMBASSY and EMBOSS both store their distfiles in the same
	     DIST_SUBDIR

	iv.  use built-in PKGMESSAGE and SUB_FILES instead of doing it the old
	     (manual) way

	For EMBASSY:

	This update brings embassy in sync with the update of EMBOSS to 3.0.0.

	Things that changed from previous version of the port:

	i.  embassy now installs by default in $LOCALBASE/emboss (the
	    new default PREFIX for emboss as well).

	ii. changed DIST_SUBDIR so that all the distfiles are put together with
	    emboss. This makes sense(TM)

	iii. incorporated new EMBASSY apps (this accounts for the changes in
	     OPTIONS and pkg-plist)

	iv.  removed obsoleted patches

	Finally, I included a sample text that could go in UPDATING.

PR:		93053
Submitted by:	Fernan Aguero <fernan (at) iib.unsam.edu.ar> (maintainer)
@
text
@d15 15
d38 9
a46 1
%%PLIST_DOMSEARCH%%bin/seqfraggle
d49 1
a51 1
%%PLIST_DOMSEARCH%%share/EMBOSS/acd/seqfraggle.acd
d54 1
d57 11
d70 8
a77 3
%%PLIST_HMMER%%bin/ealistat
%%PLIST_HMMER%%bin/ehmmalign
%%PLIST_HMMER%%bin/ehmmbuild
d83 2
a86 7
%%PLIST_HMMER%%lib/libhmmer.a
%%PLIST_HMMER%%lib/libhmmer.la
%%PLIST_HMMER%%lib/libhmmer.so
%%PLIST_HMMER%%lib/libhmmer.so.2
%%PLIST_HMMER%%share/EMBOSS/acd/ealistat.acd
%%PLIST_HMMER%%share/EMBOSS/acd/ehmmalign.acd
%%PLIST_HMMER%%share/EMBOSS/acd/ehmmbuild.acd
d92 2
d96 28
a123 6
%%PLIST_MEME%%bin/meme
%%PLIST_MEME%%lib/libmeme.a
%%PLIST_MEME%%lib/libmeme.la
%%PLIST_MEME%%lib/libmeme.so
%%PLIST_MEME%%lib/libmeme.so.2
%%PLIST_MEME%%share/EMBOSS/acd/meme.acd
d125 7
a132 4
%%PLIST_MSE%%lib/libckit.la
%%PLIST_MSE%%lib/libckit.so
%%PLIST_MSE%%lib/libckit.so.1
%%PLIST_MSE%%share/EMBOSS/acd/mse.acd
d137 3
a143 1
%%PLIST_PHYLIP%%bin/fdiscboot
d152 1
a153 1
%%PLIST_PHYLIP%%bin/fdolmove
a158 1
%%PLIST_PHYLIP%%bin/ffreqboot
a169 1
%%PLIST_PHYLIP%%bin/frestboot
d173 3
d220 75
d306 1
a307 1
%%PLIST_SIGNATURE%%bin/rocplot
d314 1
a315 1
%%PLIST_SIGNATURE%%share/EMBOSS/acd/rocplot.acd
d320 17
a336 2
%%PLIST_ESIM4%%bin/esim4
%%PLIST_ESIM4%%share/EMBOSS/acd/esim4.acd
d353 17
d372 88
a459 2
@@dirrmtry share/EMBOSS/acd
@@dirrmtry share/EMBOSS
@


1.2
log
@- Update to 2.10.0

Submitted by:	Fernan Aguero <fernan@@iib.unsam.edu.ar> (maintainer)
@
text
@a0 1
%%PLIST_DOMAINATRIX%%bin/allversusall
a1 3
%%PLIST_DOMAINATRIX%%bin/contacts
%%PLIST_DOMAINATRIX%%bin/domainalign
%%PLIST_DOMAINATRIX%%bin/domainer
a2 1
%%PLIST_DOMAINATRIX%%bin/domainrep
a5 8
%%PLIST_DOMAINATRIX%%bin/hetparse
%%PLIST_DOMAINATRIX%%bin/interface
%%PLIST_DOMAINATRIX%%bin/libgen
%%PLIST_DOMAINATRIX%%bin/pdbparse
%%PLIST_DOMAINATRIX%%bin/pdbplus
%%PLIST_DOMAINATRIX%%bin/pdbtosp
%%PLIST_DOMAINATRIX%%bin/rocon
%%PLIST_DOMAINATRIX%%bin/rocplot
a6 9
%%PLIST_DOMAINATRIX%%bin/seqalign
%%PLIST_DOMAINATRIX%%bin/seqfraggle
%%PLIST_DOMAINATRIX%%bin/seqnr
%%PLIST_DOMAINATRIX%%bin/seqsearch
%%PLIST_DOMAINATRIX%%bin/seqsort
%%PLIST_DOMAINATRIX%%bin/seqwords
%%PLIST_DOMAINATRIX%%bin/siggen
%%PLIST_DOMAINATRIX%%bin/sigscan
%%PLIST_DOMAINATRIX%%bin/sites
d8 25
d34 4
a37 2
%%PLIST_ESIM4%%bin/esim4
%%PLIST_MEME%%bin/meme
a42 2
%%PLIST_HMMER%%bin/ehmmbuild
%%PLIST_HMMER%%bin/ehmmalign
d45 3
a47 31
%%PLIST_HMMER%%bin/ealistat
%%PLIST_MSE%%bin/mse
%%PLIST_PHYLIP%%bin/eclique
%%PLIST_PHYLIP%%bin/econsense
%%PLIST_PHYLIP%%bin/econtml
%%PLIST_PHYLIP%%bin/econtrast
%%PLIST_PHYLIP%%bin/ednacomp
%%PLIST_PHYLIP%%bin/ednadist
%%PLIST_PHYLIP%%bin/ednainvar
%%PLIST_PHYLIP%%bin/ednaml
%%PLIST_PHYLIP%%bin/ednamlk
%%PLIST_PHYLIP%%bin/ednapars
%%PLIST_PHYLIP%%bin/ednapenny
%%PLIST_PHYLIP%%bin/edollop
%%PLIST_PHYLIP%%bin/edolpenny
%%PLIST_PHYLIP%%bin/efactor
%%PLIST_PHYLIP%%bin/efitch
%%PLIST_PHYLIP%%bin/egendist
%%PLIST_PHYLIP%%bin/ekitsch
%%PLIST_PHYLIP%%bin/emix
%%PLIST_PHYLIP%%bin/epenny
%%PLIST_PHYLIP%%bin/eprotdist
%%PLIST_PHYLIP%%bin/eprotpars
%%PLIST_PHYLIP%%bin/erestml
%%PLIST_PHYLIP%%bin/eseqboot
%%PLIST_PHYLIP%%bin/eneighbor
%%PLIST_TOPO%%bin/topo
%%PLIST_MEME%%lib/libmeme.so.2
%%PLIST_MEME%%lib/libmeme.so
%%PLIST_MEME%%lib/libmeme.la
%%PLIST_MEME%%lib/libmeme.a
d49 3
a51 40
%%PLIST_HMMER%%lib/libhmmer.so
%%PLIST_HMMER%%lib/libhmmer.la
%%PLIST_HMMER%%lib/libhmmer.a
%%PLIST_MSE%%lib/libckit.so.1
%%PLIST_MSE%%lib/libckit.so
%%PLIST_MSE%%lib/libckit.la
%%PLIST_MSE%%lib/libckit.a
%%PLIST_MSE%%share/EMBOSS/acd/mse.acd
%%PLIST_DOMAINATRIX%%share/EMBOSS/acd/allversusall.acd
%%PLIST_DOMAINATRIX%%share/EMBOSS/acd/cathparse.acd
%%PLIST_DOMAINATRIX%%share/EMBOSS/acd/contacts.acd
%%PLIST_DOMAINATRIX%%share/EMBOSS/acd/domainalign.acd
%%PLIST_DOMAINATRIX%%share/EMBOSS/acd/domainer.acd
%%PLIST_DOMAINATRIX%%share/EMBOSS/acd/domainnr.acd
%%PLIST_DOMAINATRIX%%share/EMBOSS/acd/domainrep.acd
%%PLIST_DOMAINATRIX%%share/EMBOSS/acd/domainreso.acd
%%PLIST_DOMAINATRIX%%share/EMBOSS/acd/domainseqs.acd
%%PLIST_DOMAINATRIX%%share/EMBOSS/acd/domainsse.acd
%%PLIST_DOMAINATRIX%%share/EMBOSS/acd/hetparse.acd
%%PLIST_DOMAINATRIX%%share/EMBOSS/acd/interface.acd
%%PLIST_DOMAINATRIX%%share/EMBOSS/acd/libgen.acd
%%PLIST_DOMAINATRIX%%share/EMBOSS/acd/pdbparse.acd
%%PLIST_DOMAINATRIX%%share/EMBOSS/acd/pdbplus.acd
%%PLIST_DOMAINATRIX%%share/EMBOSS/acd/pdbtosp.acd
%%PLIST_DOMAINATRIX%%share/EMBOSS/acd/rocon.acd
%%PLIST_DOMAINATRIX%%share/EMBOSS/acd/rocplot.acd
%%PLIST_DOMAINATRIX%%share/EMBOSS/acd/scopparse.acd
%%PLIST_DOMAINATRIX%%share/EMBOSS/acd/seqalign.acd
%%PLIST_DOMAINATRIX%%share/EMBOSS/acd/seqfraggle.acd
%%PLIST_DOMAINATRIX%%share/EMBOSS/acd/seqnr.acd
%%PLIST_DOMAINATRIX%%share/EMBOSS/acd/seqsearch.acd
%%PLIST_DOMAINATRIX%%share/EMBOSS/acd/seqsort.acd
%%PLIST_DOMAINATRIX%%share/EMBOSS/acd/seqwords.acd
%%PLIST_DOMAINATRIX%%share/EMBOSS/acd/siggen.acd
%%PLIST_DOMAINATRIX%%share/EMBOSS/acd/sigscan.acd
%%PLIST_DOMAINATRIX%%share/EMBOSS/acd/sites.acd
%%PLIST_DOMAINATRIX%%share/EMBOSS/acd/ssematch.acd
%%PLIST_EMNU%%share/EMBOSS/acd/emnu.acd
%%PLIST_ESIM4%%share/EMBOSS/acd/esim4.acd
%%PLIST_MEME%%share/EMBOSS/acd/meme.acd
a56 2
%%PLIST_HMMER%%share/EMBOSS/acd/ehmmbuild.acd
%%PLIST_HMMER%%share/EMBOSS/acd/ehmmalign.acd
d59 140
a198 25
%%PLIST_HMMER%%share/EMBOSS/acd/ealistat.acd
%%PLIST_PHYLIP%%share/EMBOSS/acd/eclique.acd
%%PLIST_PHYLIP%%share/EMBOSS/acd/econsense.acd
%%PLIST_PHYLIP%%share/EMBOSS/acd/econtml.acd
%%PLIST_PHYLIP%%share/EMBOSS/acd/econtrast.acd
%%PLIST_PHYLIP%%share/EMBOSS/acd/ednacomp.acd
%%PLIST_PHYLIP%%share/EMBOSS/acd/ednadist.acd
%%PLIST_PHYLIP%%share/EMBOSS/acd/ednainvar.acd
%%PLIST_PHYLIP%%share/EMBOSS/acd/ednaml.acd
%%PLIST_PHYLIP%%share/EMBOSS/acd/ednamlk.acd
%%PLIST_PHYLIP%%share/EMBOSS/acd/ednapars.acd
%%PLIST_PHYLIP%%share/EMBOSS/acd/ednapenny.acd
%%PLIST_PHYLIP%%share/EMBOSS/acd/edollop.acd
%%PLIST_PHYLIP%%share/EMBOSS/acd/edolpenny.acd
%%PLIST_PHYLIP%%share/EMBOSS/acd/efactor.acd
%%PLIST_PHYLIP%%share/EMBOSS/acd/efitch.acd
%%PLIST_PHYLIP%%share/EMBOSS/acd/egendist.acd
%%PLIST_PHYLIP%%share/EMBOSS/acd/ekitsch.acd
%%PLIST_PHYLIP%%share/EMBOSS/acd/emix.acd
%%PLIST_PHYLIP%%share/EMBOSS/acd/eneighbor.acd
%%PLIST_PHYLIP%%share/EMBOSS/acd/epenny.acd
%%PLIST_PHYLIP%%share/EMBOSS/acd/eprotdist.acd
%%PLIST_PHYLIP%%share/EMBOSS/acd/eprotpars.acd
%%PLIST_PHYLIP%%share/EMBOSS/acd/erestml.acd
%%PLIST_PHYLIP%%share/EMBOSS/acd/eseqboot.acd
d200 2
@


1.1
log
@[new port] biology/embassy

PR:		ports/74330
Submitted by:	Fernan Aguero <fernan(at)iib.unsam.edu.ar>
@
text
@d1 2
d4 1
d6 5
a10 1
%%PLIST_DOMAINATRIX%%bin/fraggle
a11 1
%%PLIST_DOMAINATRIX%%bin/hmmgen
d13 1
a13 1
%%PLIST_DOMAINATRIX%%bin/libscan
d17 1
a17 1
%%PLIST_DOMAINATRIX%%bin/profgen
a18 2
%%PLIST_DOMAINATRIX%%bin/scopalign
%%PLIST_DOMAINATRIX%%bin/scopnr
a19 3
%%PLIST_DOMAINATRIX%%bin/scoprep
%%PLIST_DOMAINATRIX%%bin/scopreso
%%PLIST_DOMAINATRIX%%bin/scopseqs
d21 1
a26 1
%%PLIST_DOMAINATRIX%%bin/sigplot
d28 2
d82 2
d85 1
d87 5
a91 1
%%PLIST_DOMAINATRIX%%share/EMBOSS/acd/fraggle.acd
a92 1
%%PLIST_DOMAINATRIX%%share/EMBOSS/acd/hmmgen.acd
d94 1
a94 1
%%PLIST_DOMAINATRIX%%share/EMBOSS/acd/libscan.acd
d98 1
a98 1
%%PLIST_DOMAINATRIX%%share/EMBOSS/acd/profgen.acd
a99 2
%%PLIST_DOMAINATRIX%%share/EMBOSS/acd/scopalign.acd
%%PLIST_DOMAINATRIX%%share/EMBOSS/acd/scopnr.acd
a100 3
%%PLIST_DOMAINATRIX%%share/EMBOSS/acd/scoprep.acd
%%PLIST_DOMAINATRIX%%share/EMBOSS/acd/scopreso.acd
%%PLIST_DOMAINATRIX%%share/EMBOSS/acd/scopseqs.acd
d102 1
a107 1
%%PLIST_DOMAINATRIX%%share/EMBOSS/acd/sigplot.acd
d109 2
a148 2
@@dirrm share/EMBOSS/acd
@@dirrm share/EMBOSS
@

