head	1.7;
access;
symbols
	RELEASE_6_1_0:1.6
	RELEASE_5_5_0:1.6
	RELEASE_6_0_0:1.6
	RELEASE_5_4_0:1.6
	RELEASE_4_11_0:1.6
	RELEASE_5_3_0:1.5
	RELEASE_4_10_0:1.5
	RELEASE_5_2_1:1.5
	RELEASE_5_2_0:1.5
	RELEASE_4_9_0:1.5
	RELEASE_5_1_0:1.5
	RELEASE_4_8_0:1.5
	RELEASE_5_0_0:1.5
	RELEASE_4_7_0:1.5
	RELEASE_4_6_2:1.5
	RELEASE_4_6_1:1.5
	RELEASE_4_6_0:1.5
	RELEASE_5_0_DP1:1.5
	RELEASE_4_5_0:1.5
	RELEASE_4_4_0:1.5
	RELEASE_4_3_0:1.4
	RELEASE_4_2_0:1.2
	RELEASE_4_1_1:1.2;
locks; strict;
comment	@# @;


1.7
date	2006.03.31.09.43.20;	author thierry;	state dead;
branches;
next	1.6;

1.6
date	2004.11.26.01.11.42;	author sem;	state Exp;
branches;
next	1.5;

1.5
date	2001.07.11.13.58.12;	author wjv;	state Exp;
branches;
next	1.4;

1.4
date	2001.02.20.15.51.29;	author kevlo;	state Exp;
branches;
next	1.3;

1.3
date	2000.11.28.01.43.39;	author jeh;	state Exp;
branches;
next	1.2;

1.2
date	2000.09.08.10.07.13;	author nbm;	state Exp;
branches;
next	1.1;

1.1
date	2000.08.12.16.15.48;	author nbm;	state Exp;
branches;
next	;


desc
@@


1.7
log
@For EMBOSS:

	This patch brings EMBOSS up to date with the current version.

	i.   The patches included in files/ are bugfixes for files in
	     EMBOSS-3.0.0 that appeared after the release. They are
   	     documented in ftp://emboss.open-bio.org/pub/EMBOSS/fixes/README

	     This is just 'for the record' so that we remember to remove these
	     patches in the next update.

	ii.  EMBOSS is now installed by default in LOCALBASE/emboss
	     This is to avoid CONFLICTS with other ports that install files
	     with the same names. Installing EMBOSS to another PREFIX is also
	     possible.

	iii. now EMBASSY and EMBOSS both store their distfiles in the same
	     DIST_SUBDIR

	iv.  use built-in PKGMESSAGE and SUB_FILES instead of doing it the old
	     (manual) way

	For EMBASSY:

	This update brings embassy in sync with the update of EMBOSS to 3.0.0.

	Things that changed from previous version of the port:

	i.  embassy now installs by default in $LOCALBASE/emboss (the
	    new default PREFIX for emboss as well).

	ii. changed DIST_SUBDIR so that all the distfiles are put together with
	    emboss. This makes sense(TM)

	iii. incorporated new EMBASSY apps (this accounts for the changes in
	     OPTIONS and pkg-plist)

	iv.  removed obsoleted patches

	Finally, I included a sample text that could go in UPDATING.

PR:		93053
Submitted by:	Fernan Aguero <fernan (at) iib.unsam.edu.ar> (maintainer)
@
text
@--------------------------------------------------------------------------

The EMBOSS suite has been successfully installed.

In order to see graphical output from some EMBOSS programs, you will need to
set the following environment variable in your shell startup file:

- set PLPLOT_LIB to:     "%%PREFIX%%/share/EMBOSS"

NB:  A sample configuration file has been installed to %%PREFIX%%/etc as
emboss.default.sample.  This must be renamed to emboss.default and edited
to suit your site and its requirements.

A .embossrc in a user's home directory overrides settings in the
system-wide emboss.default.

Online EMBOSS documentation is available at:
	http://www.uk.embnet.org/Software/EMBOSS/userdoc.html
	http://www.uk.embnet.org/Software/EMBOSS/Doc/
  http://emboss.sourceforge.net/docs/

--------------------------------------------------------------------------
@


1.6
log
@- Update to 2.9.0
- Pass maintainership to submitter

PR:             ports/74333
Submitted by:   Fernan Aguero <fernan(at)iib.unsam.edu.ar>
@
text
@@


1.5
log
@Remove obsolete pointer to online documentation.
@
text
@d18 1
a18 1
	http://www.uk.embnet.org/Software/EMBOSS/general.html
d20 1
@


1.4
log
@Update to version 1.10.0

PR: 25228
Submitted by: MAINTAINER
@
text
@d17 2
a18 1
Further EMBOSS documentation is available at:
a19 3

The EMBOSS administrator's guide is available in various formats at:
	ftp://ftp.no.embnet.org/pub/EMBOSS-extras/
@


1.3
log
@- Update port biology/emboss from 1.7.0 to 1.8.0

PR:		23130
Submitted by:	Johann Visagie <johann@@egenetics.com> MAINTAINER
@
text
@d5 2
a6 2
In order to use the EMBOSS programs, you will need to set some environment
variables in your shell startup file.
a8 1
- set EMBOSS_ACDROOT to: "%%PREFIX%%/share/EMBOSS/acd"
@


1.2
log
@Upgrade to 1.5.0

PR:		21108
Submitted by:	Johann Visagie <johann@@egenetics.com>
@
text
@d6 1
a6 2
variables in your shell startup file.  If EMBOSS was installed to the
default prefix, then:
d8 2
a9 2
- set PLPLOT_LIB to:     "/usr/local/share/EMBOSS"
- set EMBOSS_ACDROOT to: "/usr/local/share/EMBOSS/acd"
d11 1
a11 1
NB:  A sample configuration file has been installed to /usr/local/etc as
@


1.1
log
@Update to emboss 1.1.0, fixing some style bugs too.

PR:		ports/20519
Submitted by:	Johann Visagie <johann@@egenetics.com> (maintainer)
@
text
@d22 3
@

