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locks; strict;
comment	@# @;


1.8
date	2011.01.26.20.26.36;	author beat;	state Exp;
branches;
next	1.7;

1.7
date	2009.06.09.07.53.37;	author itetcu;	state Exp;
branches;
next	1.6;

1.6
date	2009.02.23.16.12.23;	author amdmi3;	state Exp;
branches;
next	1.5;

1.5
date	2008.03.30.05.07.36;	author rafan;	state Exp;
branches;
next	1.4;

1.4
date	2006.10.31.09.02.04;	author miwi;	state Exp;
branches;
next	1.3;

1.3
date	2006.02.10.09.37.02;	author lawrance;	state Exp;
branches;
next	1.2;

1.2
date	2003.10.22.09.29.51;	author osa;	state Exp;
branches;
next	1.1;

1.1
date	2001.02.11.16.28.59;	author jeh;	state Exp;
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desc
@@


1.8
log
@- Update to 36.3.2 to fix distfile fetching on pointyhat

PR:		ports/154267
Submitted by:	Fernan Aguero <fernan AT iib.unsam.edu.ar> (maintainer)
Feature safe:	yes
@
text
@bin/fasta%%VER%%
bin/fasta%%VER%%_t
bin/fastf%%VER%%
bin/fastf%%VER%%_t
bin/fastm%%VER%%
bin/fastm%%VER%%_t
bin/fasts%%VER%%
bin/fasts%%VER%%_t
bin/fastx%%VER%%
bin/fastx%%VER%%_t
bin/fasty%%VER%%
bin/fasty%%VER%%_t
bin/ggsearch%%VER%%
bin/ggsearch%%VER%%_t
bin/glsearch%%VER%%
bin/glsearch%%VER%%_t
bin/lalign%%VER%%
bin/lav2ps
bin/lav2svg
bin/map_db
bin/ssearch%%VER%%
bin/ssearch%%VER%%_t
bin/tfastf%%VER%%
bin/tfastf%%VER%%_t
bin/tfastm%%VER%%
bin/tfasts%%VER%%
bin/tfasts%%VER%%_t
bin/tfastx%%VER%%
bin/tfastx%%VER%%_t
bin/tfasty%%VER%%
bin/tfasty%%VER%%_t
etc/fastlibs.sample
%%PORTDOCS%%%%DOCSDIR%%/README
%%PORTDOCS%%%%DOCSDIR%%/COPYRIGHT
%%PORTDOCS%%%%DOCSDIR%%/FASTA_LIST
%%PORTDOCS%%%%DOCSDIR%%/README.versions
%%PORTDOCS%%%%DOCSDIR%%/fasta3x.me
%%PORTDOCS%%%%DOCSDIR%%/fasta3x.doc
%%PORTDOCS%%%%DOCSDIR%%/fasta20.doc
%%PORTDOCS%%%%DOCSDIR%%/fasta_func.doc
%%PORTDOCS%%%%DOCSDIR%%/readme.v30
%%PORTDOCS%%%%DOCSDIR%%/readme.v30t6
%%PORTDOCS%%%%DOCSDIR%%/readme.v30t7
%%PORTDOCS%%%%DOCSDIR%%/readme.v31t0
%%PORTDOCS%%%%DOCSDIR%%/readme.v31t1
%%PORTDOCS%%%%DOCSDIR%%/readme.v32t0
%%PORTDOCS%%%%DOCSDIR%%/readme.v33t0
%%PORTDOCS%%%%DOCSDIR%%/readme.v34t0
%%PORTDOCS%%%%DOCSDIR%%/readme.v35
%%PORTDOCS%%%%DOCSDIR%%/readme.v36
%%PORTDOCS%%%%DOCSDIR%%/readme.w32
%%PORTDOCS%%%%DOCSDIR%%/fasta.defaults
%%PORTDOCS%%%%DOCSDIR%%/fasta.options
%%PORTDOCS%%%%DOCSDIR%%/fasta_versions.html
%%PORTDOCS%%%%DOCSDIR%%/changes_v34.html
%%PORTDOCS%%%%DOCSDIR%%/changes_v35.html
%%PORTDOCS%%%%DOCSDIR%%/changes_v36.html
%%EXAMPLESDIR%%/egmsmg.aa
%%EXAMPLESDIR%%/gstt1_drome.aa
%%EXAMPLESDIR%%/gtm1_human.aa
%%EXAMPLESDIR%%/gtt1_drome.aa
%%EXAMPLESDIR%%/h10_human.aa
%%EXAMPLESDIR%%/hahu.aa
%%EXAMPLESDIR%%/lcbo.aa
%%EXAMPLESDIR%%/m1r.aa
%%EXAMPLESDIR%%/m2.aa
%%EXAMPLESDIR%%/mchu.aa
%%EXAMPLESDIR%%/mgstm1.aa
%%EXAMPLESDIR%%/ms1.aa
%%EXAMPLESDIR%%/musplfm.aa
%%EXAMPLESDIR%%/mwkw.aa
%%EXAMPLESDIR%%/mwrtc1.aa
%%EXAMPLESDIR%%/myosin_bp.aa
%%EXAMPLESDIR%%/n0.aa
%%EXAMPLESDIR%%/n1.aa
%%EXAMPLESDIR%%/n2.aa
%%EXAMPLESDIR%%/n2s.aa
%%EXAMPLESDIR%%/n2t.aa
%%EXAMPLESDIR%%/ngt.aa
%%EXAMPLESDIR%%/ngts.aa
%%EXAMPLESDIR%%/oohu.aa
%%EXAMPLESDIR%%/prio_atepa.aa
%%EXAMPLESDIR%%/qrhuld.aa
%%EXAMPLESDIR%%/titin_hum.aa
%%EXAMPLESDIR%%/xurt8c.aa
%%EXAMPLESDIR%%/xurtg.aa
%%EXAMPLESDIR%%/mgstm1.lc
%%EXAMPLESDIR%%/xurt8c.lc
%%EXAMPLESDIR%%/bovgh.seq
%%EXAMPLESDIR%%/bovprl.seq
%%EXAMPLESDIR%%/gst.seq
%%EXAMPLESDIR%%/hsgstm1b.seq
%%EXAMPLESDIR%%/humgstd.seq
%%EXAMPLESDIR%%/mgstm1.seq
%%EXAMPLESDIR%%/mgstm1_genclone.seq
%%EXAMPLESDIR%%/mgtt2_x.seq
%%EXAMPLESDIR%%/titin_hum.seq
%%EXAMPLESDIR%%/mu.lib
%%EXAMPLESDIR%%/n2_fs.lib
%%EXAMPLESDIR%%/n_fs.lib
%%EXAMPLESDIR%%/prot_test.lib
%%DATADIR%%/blosum45.mat
%%DATADIR%%/blosum50.mat
%%DATADIR%%/blosum62.mat
%%DATADIR%%/blosum80.mat
%%DATADIR%%/dna.mat
%%DATADIR%%/idn_aa.mat
%%DATADIR%%/md_10.mat
%%DATADIR%%/md_20.mat
%%DATADIR%%/md_40.mat
%%DATADIR%%/pam120.mat
%%DATADIR%%/pam250.mat
%%DATADIR%%/rna.mat
%%DATADIR%%/vtml160.mat
%%PORTDOCS%%@@dirrm %%DOCSDIR%%
@@dirrm %%EXAMPLESDIR%%
@@dirrm %%DATADIR%%
@


1.7
log
@- Update to 35.4.7 [1]
- Obey PREFIX [2]

Submitted by:	maintainer [1] [2]
Reported by:	QATty [2]
@
text
@a19 1
bin/list_db
a40 4
%%PORTDOCS%%%%DOCSDIR%%/readme.mpi_3.3
%%PORTDOCS%%%%DOCSDIR%%/readme.pvm_3.2
%%PORTDOCS%%%%DOCSDIR%%/readme.pvm_3.3
%%PORTDOCS%%%%DOCSDIR%%/readme.pvm_3.4
d50 1
d57 1
d95 1
@


1.6
log
@- Update to 35.4.4

PR:		132007
Submitted by:	Fernan Aguero <fernan at iib dot unsam dot edu dot ar> (maintainer)
@
text
@d20 1
@


1.5
log
@- Update to 35.3.5
- Switch to .tar.gz distfile so that we don't define our do-extract
- While I'm here, using substitution for version numbers in pkg-plist
  for easier upgrade

PR:		ports/121690
Submitted by:	Wen heping <wenheping at gmail.com>
Approved by:	maintainer timeout (2 weeks)
@
text
@d20 1
d36 1
d56 4
a59 2
%%EXAMPLESDIR%%/bovgh.seq
%%EXAMPLESDIR%%/bovprl.seq
a60 1
%%EXAMPLESDIR%%/gst.seq
a65 2
%%EXAMPLESDIR%%/hsgstm1b.seq
%%EXAMPLESDIR%%/humgstd.seq
a70 3
%%EXAMPLESDIR%%/mgstm1.lc
%%EXAMPLESDIR%%/mgstm1.seq
%%EXAMPLESDIR%%/mgtt2_x.seq
a86 1
%%EXAMPLESDIR%%/titin_hum.seq
d88 2
d91 12
a102 1
%%EXAMPLESDIR%%/xurtg.aa
@


1.4
log
@- Update to 34.t26.b3

PR:		ports/104508
Submitted by:	Fernan Aguero <fernan@@iib.unsam.edu.ar> (maintainer)
@
text
@d1 30
a30 29
bin/fasta34
bin/prss34_t
bin/tfastf34_t
bin/fastf34_t
bin/fastm34_t
bin/tfasts34_t
bin/tfasty34_t
bin/fasty34_t
bin/tfastx34_t
bin/fastx34_t
bin/tfasta34_t
bin/fasts34_t
bin/fasta34_t
bin/ssearch34_t
bin/tfastf34
bin/fastf34
bin/prfx34
bin/prss34
bin/tfastm34
bin/fastm34
bin/tfasts34
bin/tfasty34
bin/fasty34
bin/tfastx34
bin/fastx34
bin/fasts34
bin/tfasta34
bin/ssearch34
bin/prfx34_t
d51 1
d54 2
d57 2
d63 2
d70 3
d89 1
d91 1
a92 10
%%EXAMPLESDIR%%/mgstm1.lc
%%EXAMPLESDIR%%/xurt8c.lc
%%EXAMPLESDIR%%/bovgh.seq
%%EXAMPLESDIR%%/bovprl.seq
%%EXAMPLESDIR%%/gst.seq
%%EXAMPLESDIR%%/hsgstm1b.seq
%%EXAMPLESDIR%%/humgstd.seq
%%EXAMPLESDIR%%/mgstm1.seq
%%EXAMPLESDIR%%/mgtt2_x.seq
%%EXAMPLESDIR%%/titin_hum.seq
@


1.3
log
@Update to 34.t25.d4.

PR:		ports/93052
Submitted by:	Fernan Aguero <fernan@@iib.unsam.edu.ar> (maintainer)
@
text
@d66 1
d77 1
d89 1
@


1.2
log
@Cosmetic fix: use %%DOCSDIR%% macro.
No functionally changes.

Submitted by:	Oleg Karachevtsev <ok@@etrust.ru>
A part of PR:	57992
@
text
@d1 31
a31 1
%%PORTDOCS%%%%DOCSDIR%%/00README.1st
d33 2
a34 1
%%PORTDOCS%%%%DOCSDIR%%/README
d36 2
a37 1
%%PORTDOCS%%%%DOCSDIR%%/fasta3x.me
a38 2
%%PORTDOCS%%%%DOCSDIR%%/readme.pvm_2.0
%%PORTDOCS%%%%DOCSDIR%%/readme.pvm_3.0
d49 1
d51 49
a99 25
bin/fasta3
bin/fasta3_t
bin/fastf3
bin/fastf3_t
bin/fasts3
bin/fasts3_t
bin/fastx3
bin/fastx3_t
bin/fasty3
bin/fasty3_t
bin/map_db
bin/prss3
bin/ssearch3
bin/ssearch3_t
bin/tfasta3
bin/tfasta3_t
bin/tfastf3
bin/tfastf3_t
bin/tfasts3
bin/tfasts3_t
bin/tfastx3
bin/tfastx3_t
bin/tfasty3
bin/tfasty3_t
etc/fastlibs.sample
d101 2
@


1.1
log
@- New port: biology/fasta3, which comprises the FASTA3 suite of DNA and
  protein sequence search programs
- FASTA3 updates only some of the elements of FASTA2, which is why I have
  submitted ports of both versions (as biology/fasta and biology/fasta3)

PR:		24716
Submitted by:	Johann Visagie <johann@@egenetics.com>
@
text
@d1 19
a19 19
%%PORTDOCS%%share/doc/fasta3/00README.1st
%%PORTDOCS%%share/doc/fasta3/COPYRIGHT
%%PORTDOCS%%share/doc/fasta3/README
%%PORTDOCS%%share/doc/fasta3/fasta3x.doc
%%PORTDOCS%%share/doc/fasta3/fasta3x.me
%%PORTDOCS%%share/doc/fasta3/readme.mpi_3.3
%%PORTDOCS%%share/doc/fasta3/readme.pvm_2.0
%%PORTDOCS%%share/doc/fasta3/readme.pvm_3.0
%%PORTDOCS%%share/doc/fasta3/readme.pvm_3.2
%%PORTDOCS%%share/doc/fasta3/readme.pvm_3.3
%%PORTDOCS%%share/doc/fasta3/readme.pvm_3.4
%%PORTDOCS%%share/doc/fasta3/readme.v30
%%PORTDOCS%%share/doc/fasta3/readme.v30t6
%%PORTDOCS%%share/doc/fasta3/readme.v30t7
%%PORTDOCS%%share/doc/fasta3/readme.v31t0
%%PORTDOCS%%share/doc/fasta3/readme.v31t1
%%PORTDOCS%%share/doc/fasta3/readme.v32t0
%%PORTDOCS%%share/doc/fasta3/readme.v33t0
%%PORTDOCS%%share/doc/fasta3/readme.w32
d45 1
a45 1
%%PORTDOCS%%@@dirrm share/doc/fasta3
@

