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1.5
date	2012.11.17.05.54.51;	author svnexp;	state Exp;
branches;
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1.4
date	2010.12.12.08.10.05;	author pgollucci;	state Exp;
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next	1.3;

1.3
date	2008.08.21.06.16.21;	author rafan;	state Exp;
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next	1.2;

1.2
date	2007.04.16.21.18.52;	author edwin;	state Exp;
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1.1
date	2006.09.29.04.05.55;	author clsung;	state Exp;
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desc
@@


1.5
log
@Switch exporter over
@
text
@# Ports collection makefile for:   gmap
# Date created:        24 September 2006
# Whom:                Bob Zimmermann <rpz@@cse.wustl.edu>
#
# $FreeBSD: head/biology/gmap/Makefile 300895 2012-07-14 12:56:14Z beat $
#

PORTNAME=	gmap
PORTVERSION=	2006.04.21
CATEGORIES=	biology
MASTER_SITES=	http://www.gene.com/share/gmap/src/
DISTNAME=	${PORTNAME}-${PORTVERSION:C|\.|-|g}

MAINTAINER=	rpz@@cse.wustl.edu
COMMENT=	A Genomic Mapping and Alignment Program for mRNA and EST Sequences

USE_GMAKE=	yes
GNU_CONFIGURE=	yes

.include <bsd.port.mk>
@


1.4
log
@- fix fetch: wget is not required for fetching

Reported by:    QAT
@
text
@d5 1
a5 1
# $FreeBSD$
@


1.3
log
@Update CONFIGURE_ARGS for how we pass CONFIGURE_TARGET to configure script.
Specifically, newer autoconf (> 2.13) has different semantic of the
configure target. In short, one should use --build=CONFIGURE_TARGET
instead of CONFIGURE_TARGET directly. Otherwise, you will get a warning
and the old semantic may be removed in later autoconf releases.

To workaround this issue, many ports hack the CONFIGURE_TARGET variable
so that it contains the ``--build='' prefix.

To solve this issue, under the fact that some ports still have
configure script generated by the old autoconf, we use runtime detection
in the do-configure target so that the proper argument can be used.

Changes to Mk/*:
 - Add runtime detection magic in bsd.port.mk
 - Remove CONFIGURE_TARGET hack in various bsd.*.mk
 - USE_GNOME=gnometarget is now an no-op

Changes to individual ports, other than removing the CONFIGURE_TARGET hack:

= pkg-plist changed (due to the ugly CONFIGURE_TARGET prefix in * executables)
  - comms/gnuradio
  - science/abinit
  - science/elmer-fem
  - science/elmer-matc
  - science/elmer-meshgen2d
  - science/elmerfront
  - science/elmerpost

= use x86_64 as ARCH
  - devel/g-wrap

= other changes
  - print/magicfilter
    GNU_CONFIGURE -> HAS_CONFIGURE since it's not generated by autoconf

Total # of ports modified:  1,027
Total # of ports affected: ~7,000 (set GNU_CONFIGURE to yes)

PR:		126524 (obsoletes 52917)
Submitted by:	rafan
Tested on:	two pointyhat 7-amd64 exp runs (by pav)
Approved by:	portmgr (pav)
@
text
@a16 5
FETCH_DEPENDS=	${LOCALBASE}/bin/wget:${PORTSDIR}/ftp/wget

FETCH_CMD=	${LOCALBASE}/bin/wget
FETCH_BEFORE_ARGS=	--no-check-certificate
DISABLE_SIZE=	yes
@


1.2
log
@[patch] cleanup non-supported FreeBSD versions

PR:		ports/111727
Submitted by:	Edwin Groothuis <edwin@@mavetju.org>
Approved by:	Bob Zimmermann <rpz@@cse.wustl.edu>
@
text
@a23 1
CONFIGURE_TARGET=--build=${MACHINE_ARCH}-portbld-freebsd${OSREL}
@


1.1
log
@Add gmap 2006.04.21, a Genomic Mapping and Alignment Program for mRNA
and EST Sequences.

PR:		ports/103651
Submitted by:	Bob Zimmermann <rpz at cse.wustl.edu>
@
text
@d26 1
a26 7
.include <bsd.port.pre.mk>

.if ${OSVERSION} < 500036
EXTRA_PATCHES+=	${PATCHDIR}/extra-*
.endif

.include <bsd.port.post.mk>
@

