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1.3
date	2012.08.07.12.26.39;	author scheidell;	state Exp;
branches;
next	1.2;

1.2
date	2009.02.04.03.31.00;	author pgollucci;	state Exp;
branches;
next	1.1;

1.1
date	2006.03.15.10.41.16;	author garga;	state Exp;
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next	;


desc
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1.3
log
@SVN rev 302236 on 2012-08-07 12:26:39Z by scheidell

- Update to version 6.903

PR:		ports/169920
Submitted by:	"Reed A. Cartwright" <cartwright@@asu.edu>
Approved by:	maintainer (timeout, 21 days)
@
text
@MAFFT offers a range of multiple alignment strategies, L-INS-i
(accurate; recommended for <200 sequences), FFT-NS-i (standard speed and
accuracy), FFT-NS-2 (fast; recommended for >2,000 sequences), etc.
According to BAliBASE and other benchmark tests, L-INS-i is one of the
most accurate methods currently available.

MAFFT has been described:

K. Katoh and H. Toh 2008 (Briefings in Bioinformatics 9:286-298)
Recent developments in the MAFFT multiple sequence alignment program.

K. Katoh, K. Misawa, K. Kuma and T. Miyata (Nucleic Acids Res. 30:
3059-3066, 2002) MAFFT: a novel method for rapid multiple sequence
alignment based on fast Fourier transform. 

WWW: http://mafft.cbrc.jp/alignment/software/
@


1.2
log
@- Update download locations, update WWW

Reported by:    -fetch-original pointyhat run
@
text
@d8 4
d16 1
a16 1
WWW: http://align.bmr.kyushu-u.ac.jp/mafft
@


1.1
log
@Add mafft 5.734, multiple sequence alignments based on fast Fourier
transform.

PR:		ports/93059
Submitted by:	Fernan Aguero <fernan@@iib.unsam.edu.ar>
@
text
@d12 1
a12 1
WWW: http://www.biophys.kyoto-u.ac.jp/~katoh/programs/align/mafft/
@

