head	1.28;
access;
symbols
	RELEASE_8_3_0:1.27
	RELEASE_9_0_0:1.27
	RELEASE_7_4_0:1.25
	RELEASE_8_2_0:1.25
	RELEASE_6_EOL:1.25
	RELEASE_8_1_0:1.23
	RELEASE_7_3_0:1.20
	RELEASE_8_0_0:1.18
	RELEASE_7_2_0:1.18
	RELEASE_7_1_0:1.17
	RELEASE_6_4_0:1.17
	RELEASE_5_EOL:1.17
	RELEASE_7_0_0:1.13
	RELEASE_6_3_0:1.13
	PRE_XORG_7:1.12
	RELEASE_4_EOL:1.12
	RELEASE_6_2_0:1.11
	RELEASE_6_1_0:1.10
	RELEASE_5_5_0:1.10
	RELEASE_6_0_0:1.10
	RELEASE_5_4_0:1.8
	RELEASE_4_11_0:1.5
	RELEASE_5_3_0:1.5
	RELEASE_4_10_0:1.4
	RELEASE_5_2_1:1.3
	RELEASE_5_2_0:1.3
	RELEASE_4_9_0:1.3
	RELEASE_5_1_0:1.3
	RELEASE_4_8_0:1.3
	RELEASE_5_0_0:1.2
	RELEASE_4_7_0:1.2
	RELEASE_4_6_2:1.2
	RELEASE_4_6_1:1.2
	RELEASE_4_6_0:1.2
	RELEASE_5_0_DP1:1.2
	RELEASE_4_5_0:1.2
	RELEASE_4_4_0:1.2;
locks; strict;
comment	@# @;


1.28
date	2012.11.17.05.54.52;	author svnexp;	state Exp;
branches;
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1.27
date	2011.03.14.00.35.45;	author wen;	state Exp;
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1.26
date	2011.03.13.06.08.53;	author tabthorpe;	state Exp;
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1.25
date	2010.10.01.01.06.46;	author sunpoet;	state Exp;
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1.24
date	2010.09.04.15.32.56;	author decke;	state Exp;
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1.23
date	2010.05.30.23.46.54;	author sylvio;	state Exp;
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1.22
date	2010.05.09.13.59.34;	author sylvio;	state Exp;
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1.21
date	2010.03.24.06.46.44;	author wen;	state Exp;
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1.20
date	2010.02.10.09.47.48;	author edwin;	state Exp;
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1.19
date	2010.02.02.22.42.47;	author miwi;	state Exp;
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1.18
date	2009.01.14.16.00.34;	author miwi;	state Exp;
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1.17
date	2008.02.27.07.34.21;	author miwi;	state Exp;
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1.16
date	2008.02.25.22.34.13;	author miwi;	state Exp;
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1.15
date	2008.01.25.20.49.45;	author miwi;	state Exp;
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1.14
date	2008.01.20.21.56.24;	author miwi;	state Exp;
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1.13
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1.12
date	2006.12.10.12.39.32;	author gabor;	state Exp;
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1.11
date	2006.05.03.23.26.33;	author edwin;	state Exp;
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1.10
date	2005.04.12.03.24.57;	author obrien;	state Exp;
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1.9
date	2005.04.11.08.01.30;	author obrien;	state Exp;
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1.8
date	2005.02.19.06.38.25;	author krion;	state Exp;
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1.7
date	2005.02.18.13.45.42;	author krion;	state Exp;
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1.6
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1.5
date	2004.06.30.06.55.55;	author linimon;	state Exp;
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1.4
date	2004.02.23.03.59.05;	author kris;	state Exp;
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1.3
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1.2
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1.1
date	2001.08.06.13.07.46;	author wjv;	state Exp;
branches;
next	;


desc
@@


1.28
log
@Switch exporter over
@
text
@# New ports collection makefile for:	migrate
# Date created:		6 August 2001
# Whom:	      		Johann Visagie <wjv@@FreeBSD.org>
#
# $FreeBSD: head/biology/migrate/Makefile 300895 2012-07-14 12:56:14Z beat $
#

PORTNAME=	migrate
PORTVERSION=	3.1.6
CATEGORIES=	biology
MASTER_SITES=	http://people.sc.fsu.edu/~beerli/popgen/currentversion/ \
		http://www.glenbarber.us/ports/${CATEGORIES}/${PORTNAME}/
DISTNAME=	${PORTNAME}-${PORTVERSION}.src

MAINTAINER=	wen@@FreeBSD.org
COMMENT=	A program to estimate population sizes and migration rates

WRKSRC=		${WRKDIR}/${PORTNAME}-${PORTVERSION}/src

GNU_CONFIGURE=	yes
CONFIGURE_ENV=	ac_cv_prog_GMAKE="${MAKE}"
MAKE_ARGS=	PRETTYCFLAGS="${CFLAGS} -DNOJPEG -DNOZLIB -DNOPNG -Iharu -DPRETTY"

MAN1=		${PORTNAME}.1
MLINKS=		${PORTNAME}.1 ${PORTNAME}-n.1
PORTDOCS=	*
PORTEXAMPLES=	*
PLIST_FILES=	bin/${PORTNAME} bin/${PORTNAME}-n

.include <bsd.port.pre.mk>

NOT_FOR_ARCHS=	alpha
ONLY_FOR_ARCHS_REASON=	Does not compile

.if defined(WITH_THREAD_PRETTY)
ALL_TARGET=	thread-pretty
.elif defined(WITH_PRETTY)
ALL_TARGET=	pretty
.elif defined(WITH_THREAD)
ALL_TARGET=	thread
.else
ALL_TARGET=	all
.endif

post-patch:
	@@${REINPLACE_CMD} -e 's|="-O "|="$$CFLAGS"|g ; \
		 s|-lpthread|${PTHREAD_LIBS}|g' ${WRKSRC}/configure
	@@${REINPLACE_CMD} -e '/PRETTY$$/d' ${WRKSRC}/definitions.h
	@@${REINPLACE_CMD} -e 's|-O3||g' ${WRKSRC}/haru/makefile.gcc

do-install:
	${INSTALL_PROGRAM} ${WRKSRC}/${PORTNAME}-n ${PREFIX}/bin
	${LN} -sf ${PORTNAME}-n ${PREFIX}/bin/${PORTNAME}
	${INSTALL_MAN} ${WRKSRC}/${PORTNAME}.1 ${MAN1PREFIX}/man/man1
.if !defined(NOPORTDOCS)
	@@${MKDIR} ${DOCSDIR}
.for i in HISTORY HOWTO-PARALLEL README ${PORTNAME}.html
	${INSTALL_DATA} ${WRKSRC}/../${i} ${DOCSDIR}
.endfor
	@@${MKDIR} ${DOCSDIR}/graphics
	${INSTALL_DATA} ${WRKSRC}/../graphics/* ${DOCSDIR}/graphics
.endif
.if !defined(NOPORTEXAMPLES)
	@@${MKDIR} ${EXAMPLESDIR}
	${INSTALL_DATA} ${WRKSRC}/../example/[A-Za-z]* ${EXAMPLESDIR}
.endif

.include <bsd.port.post.mk>
@


1.27
log
@- Take maintainership
@
text
@d5 1
a5 1
# $FreeBSD$
@


1.26
log
@- Reassign to the heap

PR:		ports/155507 ports/155508
@
text
@d15 1
a15 1
MAINTAINER=	ports@@FreeBSD.org
@


1.25
log
@- Add an additional MASTER_SITES

PR:		ports/151112
Submitted by:	gjb (maintainer)
Approved by:	pgollucci (mentor)
@
text
@d15 1
a15 1
MAINTAINER=	gjb@@FreeBSD.org
@


1.24
log
@- Update MAINTAINER to submitters new mail address

PR:		ports/150274
Submitted by:	Glen Barber <glen dot j dot barber at gmail dot com> (maintainer)
Approved by:	beat (co-mentor, implicit)
@
text
@d11 2
a12 1
MASTER_SITES=	http://people.sc.fsu.edu/~beerli/popgen/currentversion/
@


1.23
log
@- Update to 3.1.6

PR:		ports/147194
Submitted by:	Glen Barber <glen.j.barber@@gmail.com> (maintainer)
@
text
@d14 1
a14 1
MAINTAINER=	glen.j.barber@@gmail.com
@


1.22
log
@- Update to 3.1.4

PR:		ports/146411
Submitted by:	Glen Barber <glen.j.barber@@gmail.com> (maintainer)
@
text
@d9 1
a9 1
PORTVERSION=	3.1.4
@


1.21
log
@- Update to 3.1.3
- Pass maintainership to submitter

PR:		ports/144992
Submitted by:	Glen Barber <glen.j.barber@@gmail.com>
@
text
@d9 1
a9 1
PORTVERSION=	3.1.3
@


1.20
log
@Update to 3.1.2
@
text
@d9 1
a9 1
PORTVERSION=	3.1.2
d14 1
a14 1
MAINTAINER=	ports@@FreeBSD.org
@


1.19
log
@- Update to 3.1.1

PR:		143437
Submitted by:	Ports Fury
@
text
@d9 1
a9 1
PORTVERSION=	3.1.1
@


1.18
log
@- Update to 3.0.3

PR:		130459
Submitted by:	KATO Tsuguru <tkato432@@yahoo.com>
@
text
@d9 1
a9 1
PORTVERSION=	3.0.3
d11 1
a11 1
MASTER_SITES=	http://people.scs.fsu.edu/~beerli/popgen/currentversion/
d23 5
a27 2
MAN1=		migrate.1
MLINKS=		migrate.1 migrate-n.1
d47 2
d51 3
a53 3
	${INSTALL_PROGRAM} ${WRKSRC}/migrate-n ${PREFIX}/bin
	${LN} -sf migrate-n ${PREFIX}/bin/migrate
	${INSTALL_MAN} ${WRKSRC}/migrate.1 ${MAN1PREFIX}/man/man1
d56 1
a56 1
.for i in HISTORY HOWTO-PARALLEL README migrate.html
@


1.17
log
@- File was rerolled for a small bugfix.

Submitted by:	pointyhat via pav/erwin
@
text
@d9 1
a9 2
PORTVERSION=	2.4.3
PORTREVISION=	1
d11 1
a11 2
MASTER_SITES=	http://popgen.csit.fsu.edu/%SUBDIR%/
MASTER_SITE_SUBDIR=	currentversion oldversions/${PORTVERSION}
a18 1
USE_GNOME=	gnometarget
d20 2
a21 2
MAKE_ARGS=	HARDWARECFLAGS="${CFLAGS}" \
		MYCPPFLAGS="${CFLAGS} -DNOJPEG -DNOPNG -DNOZLIB"
d42 2
a43 2
	@@${REINPLACE_CMD} -e \
		's|-lpthread|${PTHREAD_LIBS}|g' ${WRKSRC}/configure
d59 1
a59 1
	${INSTALL_DATA} ${WRKSRC}/../example/* ${EXAMPLESDIR}
@


1.16
log
@- Update to 2.4.3

Submitted by:	Ports Fury
@
text
@d10 1
@


1.15
log
@- Update to 2.4.2 (fix fetch problems)

Submitted by:	pointyhat via pav
@
text
@d9 1
a9 1
PORTVERSION=	2.4.2
@


1.14
log
@- Update to 2.4.1

PR:		119719
Submitted by:	KATO Tsuguru <tkato432@@yahoo.com>
@
text
@d9 1
a9 1
PORTVERSION=	2.4.1
@


1.13
log
@- Update to version 2.3

PR:		ports/116019
Submitted by:	KATO Tsuguru
@
text
@d9 1
a9 1
PORTVERSION=	2.3
d11 2
a12 1
MASTER_SITES=	http://popgen.csit.fsu.edu/currentversion/
a45 2
	@@${REINPLACE_CMD} -e 's|@@CFLAGS@@||g ; \
		 s|make -f|$$(MAKE) -f|g' ${WRKSRC}/Makefile.in
@


1.12
log
@- Update to 2.1.3
- Fix fetching
- Remove old patch and use MAKE_ARGS instead
- portlint(1) and whitespace

Approved by:	erwin (mentor)
@
text
@d9 1
a9 1
PORTVERSION=	2.1.3
d18 2
d21 2
a22 2
CONFIGURE_TARGET=	--build=${MACHINE_ARCH}-portbld-freebsd${OSREL}
MAKE_ARGS=	CFLAGS="${CFLAGS}"
d27 14
a40 4
DOCS=		HISTORY HOWTO-PARALLEL README migrate.html
EXAMPLES=	README infile.ep infile.msat infile.seq \
		outfile-bayes-saved outfile-ml-saved \
		parmfile parmfile.testbayes parmfile.testml
d43 4
a46 1
	@@${REINPLACE_CMD} 's,-falign-loops=16,,g' ${WRKSRC}/configure
d49 3
a51 3
	@@ ${INSTALL_PROGRAM} ${WRKSRC}/migrate-n ${PREFIX}/bin
	@@ cd ${PREFIX}/bin && ${LN} -s migrate-n migrate
	@@ ${INSTALL_MAN} ${WRKSRC}/migrate.1 ${MAN1PREFIX}/man/man1
d53 3
a55 3
	@@ ${MKDIR} ${DOCSDIR}/graphics
.for i in ${DOCS}
	@@ ${INSTALL_DATA} ${WRKSRC}/../${i} ${DOCSDIR}
d57 2
a58 5
	@@ ${MKDIR} ${EXAMPLESDIR}
.for i in ${EXAMPLES}
	@@ ${INSTALL_DATA} ${WRKSRC}/../example/${i} ${EXAMPLESDIR}
.endfor
	@@ ${INSTALL_DATA} ${WRKSRC}/../graphics/* ${DOCSDIR}/graphics
d60 3
a62 5

.include <bsd.port.pre.mk>

.if ${ARCH} == "alpha"
BROKEN=		Does not compile
@


1.11
log
@Remove USE_REINPLACE from all categories starting with B
@
text
@d9 1
a9 1
PORTVERSION=	2.0.3
d11 1
a11 1
MASTER_SITES=	ftp://evolution.genetics.washington.edu/pub/lamarc/migrate/
d20 1
d26 3
a28 3
EXAMPLES=	README infile.benchmark infile.ep infile.msat infile.seq \
		parmfile parmfile.benchmark parmfile.ep parmfile.msat \
		parmfile.seq
d31 1
a31 1
		@@${REINPLACE_CMD} 's,-falign-loops=16,,g' ${WRKSRC}/configure
d39 2
a40 2
.for file in ${DOCS}
	@@ ${INSTALL_DATA} ${WRKSRC}/../${file} ${DOCSDIR}
d43 2
a44 2
.for file in ${EXAMPLES}
	@@ ${INSTALL_DATA} ${WRKSRC}/../example/${file} ${EXAMPLESDIR}
d52 1
a52 1
BROKEN=		"Does not compile"
@


1.10
log
@At Kris's request, back out the MACHINE_ARCH spelling correction until
after 5.4-RELEASE.
@
text
@a19 1
USE_REINPLACE=	yes
@


1.9
log
@Assist getting more ports working on AMD64 by obeying the
Ports Collection documentation and use 'ARCH' rather than 'MACHINE_ARCH'.
@
text
@d19 1
a19 1
CONFIGURE_TARGET=	--build=${ARCH}-portbld-freebsd${OSREL}
@


1.8
log
@Fix build on 4.x

PR:		ports/77697
Submitted by:	Sam Lawrance <boris at brooknet.com.au>
@
text
@d19 1
a19 1
CONFIGURE_TARGET=	--build=${MACHINE_ARCH}-portbld-freebsd${OSREL}
@


1.7
log
@Update to version 2.0.3

PR:		ports/77676
Submitted by:	Sam Lawrance <boris at brooknet.com.au>
@
text
@d20 1
d30 3
@


1.6
log
@With portmgr hat on, reset maintainership of this port.  All of wjv's
other ports were reset a couple of months ago; this one appears to have
been missed.
@
text
@d9 1
a9 1
PORTVERSION=	1.7.6.1
@


1.5
log
@Update to 1.7.6.1.

PR:		ports/67429
Submitted by:	Roman Neuhauser <neuhauser at chello dot cz>
Approved by:	maintainer timeout (4 weeks)
@
text
@d14 1
a14 1
MAINTAINER=	wjv@@FreeBSD.org
@


1.4
log
@BROKEN on alpha: Does not compile
@
text
@d9 1
a9 1
PORTVERSION=	1.2.4
d17 1
a17 4
WRKSRC=		${WRKDIR}/${PORTNAME}-${PORTVERSION}
CONFIGURE_WRKSRC=	${WRKSRC}/src
BUILD_WRKSRC=	${CONFIGURE_WRKSRC}
INSTALL_WRKSRC=	${CONFIGURE_WRKSRC}
d19 1
d22 1
d24 7
a30 1
post-install:
d32 1
d35 6
a40 2
.for docfile in HISTORY HOWTO-PARALLEL README migrate.html
	@@ ${INSTALL_DATA} ${WRKSRC}/${docfile} ${DOCSDIR}
d42 1
a42 1
	@@ ${INSTALL_DATA} ${WRKSRC}/graphics/* ${DOCSDIR}/graphics
@


1.3
log
@Clear moonlight beckons.
Requiem mors pacem pkg-comment,
And be calm ports tree.

E Nomini Patri, E Fili, E Spiritu Sancti.
@
text
@d35 7
a41 1
.include <bsd.port.mk>
@


1.2
log
@- Update to version 1.2.4
@
text
@d5 1
a5 1
# $FreeBSD: ports/biology/migrate/Makefile,v 1.1 2001/08/06 13:07:46 wjv Exp $
d15 1
@


1.1
log
@Add migrate 1.2,
a program to estimate population sizes and
migration rates.
@
text
@d5 1
a5 1
# $FreeBSD$
d9 1
a9 1
PORTVERSION=	1.2
@

