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desc
@@


1.14
log
@- Delete biology/nab port after being marked DEPRECATED for three months

PR:		ports/125891
Submitted by:	M. L. Dodson <mldodson@@comcast.net> (maintainer)
@
text
@bin/matextract
bin/matgen
bin/matmerge
bin/matmul
bin/nab
bin/nab2c
bin/teLeap
bin/transform
bin/tss_init
bin/tss_main
bin/tss_next
include/defreal.h
include/nab.h
include/nabcode.h
include/nabtypes.h
lib/cifparse.a
lib/libnab.a
lib/libsym.a
%%PORTDOCS%%%%DOCSDIR%%/NAB.pdf
%%DATADIR%%/benchmarks/1akd.mc.pdb
%%DATADIR%%/benchmarks/1akd.mc.x
%%DATADIR%%/benchmarks/1akd.top
%%DATADIR%%/benchmarks/README
%%DATADIR%%/benchmarks/bench_amber
%%DATADIR%%/benchmarks/bench_cg.nab
%%DATADIR%%/benchmarks/bench_md.nab
%%DATADIR%%/benchmarks/bench_nr.nab
%%DATADIR%%/benchmarks/cox2.inpcrd
%%DATADIR%%/benchmarks/cox2.nab
%%DATADIR%%/benchmarks/cox2.pdb
%%DATADIR%%/benchmarks/cox2.prmtop
%%DATADIR%%/benchmarks/gact3.mc.pdb
%%DATADIR%%/benchmarks/gact3.mc.x
%%DATADIR%%/benchmarks/gact3.top
%%DATADIR%%/benchmarks/gact4.mc.pdb
%%DATADIR%%/benchmarks/gact4.mc.x
%%DATADIR%%/benchmarks/gact4.top
%%DATADIR%%/benchmarks/gbrna.nab
%%DATADIR%%/benchmarks/gbrna.out.check
%%DATADIR%%/benchmarks/gcn4_md.nab
%%DATADIR%%/benchmarks/gcn4_nr.nab
%%DATADIR%%/benchmarks/gcn4dna.mc.pdb
%%DATADIR%%/benchmarks/gcn4dna.mc.x
%%DATADIR%%/benchmarks/gcn4dna.top
%%DATADIR%%/benchmarks/gcn4p1.mc.pdb
%%DATADIR%%/benchmarks/gcn4p1.mc.x
%%DATADIR%%/benchmarks/gcn4p1.top
%%DATADIR%%/benchmarks/halfam0.mc.pdb
%%DATADIR%%/benchmarks/halfam0.mc.x
%%DATADIR%%/benchmarks/halfam0.top
%%DATADIR%%/benchmarks/mb.inpcrd
%%DATADIR%%/benchmarks/mb.nab
%%DATADIR%%/benchmarks/mb.out.check
%%DATADIR%%/benchmarks/mb.pdb
%%DATADIR%%/benchmarks/mb.prmtop
%%DATADIR%%/benchmarks/p450.mc.pdb
%%DATADIR%%/benchmarks/p450.mc.x
%%DATADIR%%/benchmarks/p450.nab
%%DATADIR%%/benchmarks/p450.out.check
%%DATADIR%%/benchmarks/p450.top
%%DATADIR%%/bin/matextract
%%DATADIR%%/bin/matgen
%%DATADIR%%/bin/matmerge
%%DATADIR%%/bin/matmul
%%DATADIR%%/bin/nab
%%DATADIR%%/bin/nab2c
%%DATADIR%%/bin/teLeap
%%DATADIR%%/bin/transform
%%DATADIR%%/bin/tss_init
%%DATADIR%%/bin/tss_main
%%DATADIR%%/bin/tss_next
%%DATADIR%%/config.h
%%DATADIR%%/coords
%%DATADIR%%/dgdb/adna.basepair.db
%%DATADIR%%/dgdb/adna.nucleotide.db
%%DATADIR%%/dgdb/adna.stack.db
%%DATADIR%%/dgdb/arna.basepair.db
%%DATADIR%%/dgdb/arna.nucleotide.db
%%DATADIR%%/dgdb/arna.stack.db
%%DATADIR%%/dgdb/basepairs/aa.I.pdb
%%DATADIR%%/dgdb/basepairs/aa.II.pdb
%%DATADIR%%/dgdb/basepairs/aa.V.pdb
%%DATADIR%%/dgdb/basepairs/aa.Va.pdb
%%DATADIR%%/dgdb/basepairs/ac.XXV.pdb
%%DATADIR%%/dgdb/basepairs/ac.XXVI.pdb
%%DATADIR%%/dgdb/basepairs/ag.IX.pdb
%%DATADIR%%/dgdb/basepairs/ag.VIII.pdb
%%DATADIR%%/dgdb/basepairs/ag.X.pdb
%%DATADIR%%/dgdb/basepairs/ag.XI.pdb
%%DATADIR%%/dgdb/basepairs/at.XX.pdb
%%DATADIR%%/dgdb/basepairs/at.XXI.pdb
%%DATADIR%%/dgdb/basepairs/at.XXIII.pdb
%%DATADIR%%/dgdb/basepairs/at.XXIV.pdb
%%DATADIR%%/dgdb/basepairs/au.XX.pdb
%%DATADIR%%/dgdb/basepairs/au.XXI.pdb
%%DATADIR%%/dgdb/basepairs/au.XXIII.pdb
%%DATADIR%%/dgdb/basepairs/au.XXIV.pdb
%%DATADIR%%/dgdb/basepairs/ca.XXV.pdb
%%DATADIR%%/dgdb/basepairs/ca.XXVI.pdb
%%DATADIR%%/dgdb/basepairs/cc.XIV.pdb
%%DATADIR%%/dgdb/basepairs/cc.XV.pdb
%%DATADIR%%/dgdb/basepairs/cg.XIX.pdb
%%DATADIR%%/dgdb/basepairs/cg.XXII.pdb
%%DATADIR%%/dgdb/basepairs/ct.XVII.pdb
%%DATADIR%%/dgdb/basepairs/ct.XVIII.pdb
%%DATADIR%%/dgdb/basepairs/cu.XVII.pdb
%%DATADIR%%/dgdb/basepairs/cu.XVIII.pdb
%%DATADIR%%/dgdb/basepairs/ga.IX.pdb
%%DATADIR%%/dgdb/basepairs/ga.VIII.pdb
%%DATADIR%%/dgdb/basepairs/ga.X.pdb
%%DATADIR%%/dgdb/basepairs/ga.XI.pdb
%%DATADIR%%/dgdb/basepairs/gc.XIX.pdb
%%DATADIR%%/dgdb/basepairs/gc.XXII.pdb
%%DATADIR%%/dgdb/basepairs/gg.III.pdb
%%DATADIR%%/dgdb/basepairs/gg.IV.pdb
%%DATADIR%%/dgdb/basepairs/gg.VI.pdb
%%DATADIR%%/dgdb/basepairs/gg.VII.pdb
%%DATADIR%%/dgdb/basepairs/gg.VIIa.pdb
%%DATADIR%%/dgdb/basepairs/gg.VIa.pdb
%%DATADIR%%/dgdb/basepairs/gt.XXVII.pdb
%%DATADIR%%/dgdb/basepairs/gt.XXVIII.pdb
%%DATADIR%%/dgdb/basepairs/gu.XXVII.pdb
%%DATADIR%%/dgdb/basepairs/gu.XXVIII.pdb
%%DATADIR%%/dgdb/basepairs/ta.XX.pdb
%%DATADIR%%/dgdb/basepairs/ta.XXI.pdb
%%DATADIR%%/dgdb/basepairs/ta.XXIII.pdb
%%DATADIR%%/dgdb/basepairs/ta.XXIV.pdb
%%DATADIR%%/dgdb/basepairs/tc.XVII.pdb
%%DATADIR%%/dgdb/basepairs/tc.XVIII.pdb
%%DATADIR%%/dgdb/basepairs/tg.XXVII.pdb
%%DATADIR%%/dgdb/basepairs/tg.XXVIII.pdb
%%DATADIR%%/dgdb/basepairs/tt.XII.pdb
%%DATADIR%%/dgdb/basepairs/tt.XIII.pdb
%%DATADIR%%/dgdb/basepairs/tt.XVI.pdb
%%DATADIR%%/dgdb/basepairs/tt.XVIa.pdb
%%DATADIR%%/dgdb/basepairs/tu.XII.pdb
%%DATADIR%%/dgdb/basepairs/tu.XIII.pdb
%%DATADIR%%/dgdb/basepairs/tu.XVI.pdb
%%DATADIR%%/dgdb/basepairs/ua.XX.pdb
%%DATADIR%%/dgdb/basepairs/ua.XXI.pdb
%%DATADIR%%/dgdb/basepairs/ua.XXIII.pdb
%%DATADIR%%/dgdb/basepairs/ua.XXIV.pdb
%%DATADIR%%/dgdb/basepairs/uc.XVII.pdb
%%DATADIR%%/dgdb/basepairs/uc.XVIII.pdb
%%DATADIR%%/dgdb/basepairs/ug.XXVII.pdb
%%DATADIR%%/dgdb/basepairs/ug.XXVIII.pdb
%%DATADIR%%/dgdb/basepairs/ut.XII.pdb
%%DATADIR%%/dgdb/basepairs/ut.XIII.pdb
%%DATADIR%%/dgdb/basepairs/ut.XVI.pdb
%%DATADIR%%/dgdb/basepairs/uu.XII.pdb
%%DATADIR%%/dgdb/basepairs/uu.XIII.pdb
%%DATADIR%%/dgdb/basepairs/uu.XVI.pdb
%%DATADIR%%/dgdb/basepairs/uu.XVIa.pdb
%%DATADIR%%/dgdb/bdna.basepair.db
%%DATADIR%%/dgdb/bdna.nucleotide.db
%%DATADIR%%/dgdb/bdna.stack.db
%%DATADIR%%/dgdb/dna.basepair.db
%%DATADIR%%/dgdb/rna.basepair.db
%%DATADIR%%/dgdb/stacking/aa.a-rna.pdb
%%DATADIR%%/dgdb/stacking/aa.adna.pdb
%%DATADIR%%/dgdb/stacking/aa.arna.pdb
%%DATADIR%%/dgdb/stacking/aa.bdna.pdb
%%DATADIR%%/dgdb/stacking/aa.cdna.pdb
%%DATADIR%%/dgdb/stacking/aa.ddna.pdb
%%DATADIR%%/dgdb/stacking/aa.tdna.pdb
%%DATADIR%%/dgdb/stacking/ac.a-rna.pdb
%%DATADIR%%/dgdb/stacking/ac.adna.pdb
%%DATADIR%%/dgdb/stacking/ac.arna.pdb
%%DATADIR%%/dgdb/stacking/ac.bdna.pdb
%%DATADIR%%/dgdb/stacking/ac.cdna.pdb
%%DATADIR%%/dgdb/stacking/ac.ddna.pdb
%%DATADIR%%/dgdb/stacking/ac.tdna.pdb
%%DATADIR%%/dgdb/stacking/ag.a-rna.pdb
%%DATADIR%%/dgdb/stacking/ag.adna.pdb
%%DATADIR%%/dgdb/stacking/ag.arna.pdb
%%DATADIR%%/dgdb/stacking/ag.bdna.pdb
%%DATADIR%%/dgdb/stacking/ag.cdna.pdb
%%DATADIR%%/dgdb/stacking/ag.ddna.pdb
%%DATADIR%%/dgdb/stacking/ag.tdna.pdb
%%DATADIR%%/dgdb/stacking/at.adna.pdb
%%DATADIR%%/dgdb/stacking/at.bdna.pdb
%%DATADIR%%/dgdb/stacking/at.cdna.pdb
%%DATADIR%%/dgdb/stacking/at.ddna.pdb
%%DATADIR%%/dgdb/stacking/at.tdna.pdb
%%DATADIR%%/dgdb/stacking/au.a-rna.pdb
%%DATADIR%%/dgdb/stacking/au.arna.pdb
%%DATADIR%%/dgdb/stacking/ca.a-rna.pdb
%%DATADIR%%/dgdb/stacking/ca.adna.pdb
%%DATADIR%%/dgdb/stacking/ca.arna.pdb
%%DATADIR%%/dgdb/stacking/ca.bdna.pdb
%%DATADIR%%/dgdb/stacking/ca.cdna.pdb
%%DATADIR%%/dgdb/stacking/ca.ddna.pdb
%%DATADIR%%/dgdb/stacking/ca.tdna.pdb
%%DATADIR%%/dgdb/stacking/cc.a-rna.pdb
%%DATADIR%%/dgdb/stacking/cc.adna.pdb
%%DATADIR%%/dgdb/stacking/cc.arna.pdb
%%DATADIR%%/dgdb/stacking/cc.bdna.pdb
%%DATADIR%%/dgdb/stacking/cc.cdna.pdb
%%DATADIR%%/dgdb/stacking/cc.ddna.pdb
%%DATADIR%%/dgdb/stacking/cc.tdna.pdb
%%DATADIR%%/dgdb/stacking/cg.a-rna.pdb
%%DATADIR%%/dgdb/stacking/cg.adna.pdb
%%DATADIR%%/dgdb/stacking/cg.arna.pdb
%%DATADIR%%/dgdb/stacking/cg.bdna.pdb
%%DATADIR%%/dgdb/stacking/cg.cdna.pdb
%%DATADIR%%/dgdb/stacking/cg.ddna.pdb
%%DATADIR%%/dgdb/stacking/cg.tdna.pdb
%%DATADIR%%/dgdb/stacking/cg.zdna.pdb
%%DATADIR%%/dgdb/stacking/ct.adna.pdb
%%DATADIR%%/dgdb/stacking/ct.bdna.pdb
%%DATADIR%%/dgdb/stacking/ct.cdna.pdb
%%DATADIR%%/dgdb/stacking/ct.ddna.pdb
%%DATADIR%%/dgdb/stacking/ct.tdna.pdb
%%DATADIR%%/dgdb/stacking/cu.a-rna.pdb
%%DATADIR%%/dgdb/stacking/cu.arna.pdb
%%DATADIR%%/dgdb/stacking/ga.a-rna.pdb
%%DATADIR%%/dgdb/stacking/ga.adna.pdb
%%DATADIR%%/dgdb/stacking/ga.arna.pdb
%%DATADIR%%/dgdb/stacking/ga.bdna.pdb
%%DATADIR%%/dgdb/stacking/ga.cdna.pdb
%%DATADIR%%/dgdb/stacking/ga.ddna.pdb
%%DATADIR%%/dgdb/stacking/ga.tdna.pdb
%%DATADIR%%/dgdb/stacking/gc.a-rna.pdb
%%DATADIR%%/dgdb/stacking/gc.adna.pdb
%%DATADIR%%/dgdb/stacking/gc.arna.pdb
%%DATADIR%%/dgdb/stacking/gc.bdna.pdb
%%DATADIR%%/dgdb/stacking/gc.cdna.pdb
%%DATADIR%%/dgdb/stacking/gc.ddna.pdb
%%DATADIR%%/dgdb/stacking/gc.tdna.pdb
%%DATADIR%%/dgdb/stacking/gc.zdna.pdb
%%DATADIR%%/dgdb/stacking/gg.a-rna.pdb
%%DATADIR%%/dgdb/stacking/gg.adna.pdb
%%DATADIR%%/dgdb/stacking/gg.arna.pdb
%%DATADIR%%/dgdb/stacking/gg.bdna.pdb
%%DATADIR%%/dgdb/stacking/gg.cdna.pdb
%%DATADIR%%/dgdb/stacking/gg.ddna.pdb
%%DATADIR%%/dgdb/stacking/gg.tdna.pdb
%%DATADIR%%/dgdb/stacking/gt.adna.pdb
%%DATADIR%%/dgdb/stacking/gt.bdna.pdb
%%DATADIR%%/dgdb/stacking/gt.cdna.pdb
%%DATADIR%%/dgdb/stacking/gt.ddna.pdb
%%DATADIR%%/dgdb/stacking/gt.tdna.pdb
%%DATADIR%%/dgdb/stacking/gu.a-rna.pdb
%%DATADIR%%/dgdb/stacking/gu.arna.pdb
%%DATADIR%%/dgdb/stacking/ta.adna.pdb
%%DATADIR%%/dgdb/stacking/ta.bdna.pdb
%%DATADIR%%/dgdb/stacking/ta.cdna.pdb
%%DATADIR%%/dgdb/stacking/ta.ddna.pdb
%%DATADIR%%/dgdb/stacking/ta.tdna.pdb
%%DATADIR%%/dgdb/stacking/tc.adna.pdb
%%DATADIR%%/dgdb/stacking/tc.bdna.pdb
%%DATADIR%%/dgdb/stacking/tc.cdna.pdb
%%DATADIR%%/dgdb/stacking/tc.ddna.pdb
%%DATADIR%%/dgdb/stacking/tc.tdna.pdb
%%DATADIR%%/dgdb/stacking/tg.adna.pdb
%%DATADIR%%/dgdb/stacking/tg.bdna.pdb
%%DATADIR%%/dgdb/stacking/tg.cdna.pdb
%%DATADIR%%/dgdb/stacking/tg.ddna.pdb
%%DATADIR%%/dgdb/stacking/tg.tdna.pdb
%%DATADIR%%/dgdb/stacking/tt.adna.pdb
%%DATADIR%%/dgdb/stacking/tt.bdna.pdb
%%DATADIR%%/dgdb/stacking/tt.cdna.pdb
%%DATADIR%%/dgdb/stacking/tt.ddna.pdb
%%DATADIR%%/dgdb/stacking/tt.tdna.pdb
%%DATADIR%%/dgdb/stacking/ua.a-rna.pdb
%%DATADIR%%/dgdb/stacking/ua.arna.pdb
%%DATADIR%%/dgdb/stacking/uc.a-rna.pdb
%%DATADIR%%/dgdb/stacking/uc.arna.pdb
%%DATADIR%%/dgdb/stacking/ug.a-rna.pdb
%%DATADIR%%/dgdb/stacking/ug.arna.pdb
%%DATADIR%%/dgdb/stacking/uu.a-rna.pdb
%%DATADIR%%/dgdb/stacking/uu.arna.pdb
%%DATADIR%%/dgdb/trna.basepair.db
%%DATADIR%%/dgdb/trna.nucleotide.db
%%DATADIR%%/dgdb/trna.stack.db
%%DATADIR%%/dgdb/zdna.basepair.db
%%DATADIR%%/dgdb/zdna.nucleotide.db
%%DATADIR%%/dgdb/zdna.stack.db
%%DATADIR%%/examples/ADE.pdb
%%DATADIR%%/examples/Makefile
%%DATADIR%%/examples/README
%%DATADIR%%/examples/THY.pdb
%%DATADIR%%/examples/acgtacgt.pdb
%%DATADIR%%/examples/ata.triad.min.pdb
%%DATADIR%%/examples/aua.triad.min.pdb
%%DATADIR%%/examples/cgc.triad.min.pdb
%%DATADIR%%/examples/gcg.triad.min.pdb
%%DATADIR%%/examples/gcg10.pdb
%%DATADIR%%/examples/getbase.nab
%%DATADIR%%/examples/mme_typical_calling_sequence.nab
%%DATADIR%%/examples/program_1.nab
%%DATADIR%%/examples/program_10.nab
%%DATADIR%%/examples/program_11.nab
%%DATADIR%%/examples/program_12.nab
%%DATADIR%%/examples/program_13.nab
%%DATADIR%%/examples/program_14.nab
%%DATADIR%%/examples/program_2.nab
%%DATADIR%%/examples/program_2.ref
%%DATADIR%%/examples/program_3.nab
%%DATADIR%%/examples/program_4.nab
%%DATADIR%%/examples/program_4.ref
%%DATADIR%%/examples/program_5.ata.in
%%DATADIR%%/examples/program_5.cgc.in
%%DATADIR%%/examples/program_5.gcg.in
%%DATADIR%%/examples/program_5.nab
%%DATADIR%%/examples/program_5.tat.in
%%DATADIR%%/examples/program_6.nab
%%DATADIR%%/examples/program_7.nab
%%DATADIR%%/examples/program_8.nab
%%DATADIR%%/examples/program_9.nab
%%DATADIR%%/examples/rna_pseudoknot.pdb
%%DATADIR%%/examples/spline.nab
%%DATADIR%%/examples/tat.triad.min.pdb
%%DATADIR%%/examples/test.pdb
%%DATADIR%%/examples/test.sup.pdb
%%DATADIR%%/examples/toto.dat
%%DATADIR%%/fd_data/abdna.dat
%%DATADIR%%/fd_data/abdna.dat.old
%%DATADIR%%/fd_data/adna.dat
%%DATADIR%%/fd_data/aprna.dat
%%DATADIR%%/fd_data/arna.dat
%%DATADIR%%/fd_data/lbdna.dat
%%DATADIR%%/fd_data/sbdna.dat
%%DATADIR%%/include/defreal.h
%%DATADIR%%/include/nab.h
%%DATADIR%%/include/nabcode.h
%%DATADIR%%/include/nabtypes.h
%%DATADIR%%/leap/cmd/README
%%DATADIR%%/leap/cmd/leaprc.ff02
%%DATADIR%%/leap/cmd/leaprc.ff02EP
%%DATADIR%%/leap/cmd/leaprc.ff03
%%DATADIR%%/leap/cmd/leaprc.ff03ua
%%DATADIR%%/leap/cmd/leaprc.ff84
%%DATADIR%%/leap/cmd/leaprc.ff86
%%DATADIR%%/leap/cmd/leaprc.ff94
%%DATADIR%%/leap/cmd/leaprc.ff94.nmr
%%DATADIR%%/leap/cmd/leaprc.ff96
%%DATADIR%%/leap/cmd/leaprc.ff98
%%DATADIR%%/leap/cmd/leaprc.ff99
%%DATADIR%%/leap/cmd/leaprc.ff99SB
%%DATADIR%%/leap/cmd/leaprc.ffAM1
%%DATADIR%%/leap/cmd/leaprc.ffPM3
%%DATADIR%%/leap/cmd/leaprc.gaff
%%DATADIR%%/leap/cmd/leaprc.glycam04
%%DATADIR%%/leap/cmd/leaprc.glycam04EP
%%DATADIR%%/leap/cmd/leaprc.rna.ff02
%%DATADIR%%/leap/cmd/leaprc.rna.ff02EP
%%DATADIR%%/leap/cmd/leaprc.rna.ff84
%%DATADIR%%/leap/cmd/leaprc.rna.ff94
%%DATADIR%%/leap/cmd/leaprc.rna.ff98
%%DATADIR%%/leap/cmd/leaprc.rna.ff99
%%DATADIR%%/leap/cmd/leaprc.toyrna
%%DATADIR%%/leap/cmd/protein.cmd
%%DATADIR%%/leap/lib/8Murea.readme
%%DATADIR%%/leap/lib/8Mureabox.off
%%DATADIR%%/leap/lib/Makefile
%%DATADIR%%/leap/lib/all_amino02.lib
%%DATADIR%%/leap/lib/all_amino02EP.lib
%%DATADIR%%/leap/lib/all_amino03.lib
%%DATADIR%%/leap/lib/all_amino91.lib
%%DATADIR%%/leap/lib/all_amino94.lib
%%DATADIR%%/leap/lib/all_amino94.nmr.lib
%%DATADIR%%/leap/lib/all_aminoAM1.lib
%%DATADIR%%/leap/lib/all_aminoPM3.lib
%%DATADIR%%/leap/lib/all_aminoct02.lib
%%DATADIR%%/leap/lib/all_aminoct02EP.lib
%%DATADIR%%/leap/lib/all_aminoct91.lib
%%DATADIR%%/leap/lib/all_aminoct94.lib
%%DATADIR%%/leap/lib/all_aminont02.lib
%%DATADIR%%/leap/lib/all_aminont02EP.lib
%%DATADIR%%/leap/lib/all_aminont91.lib
%%DATADIR%%/leap/lib/all_aminont94.lib
%%DATADIR%%/leap/lib/all_nucleic02.lib
%%DATADIR%%/leap/lib/all_nucleic02EP.lib
%%DATADIR%%/leap/lib/all_nucleic91.lib
%%DATADIR%%/leap/lib/all_nucleic94.lib
%%DATADIR%%/leap/lib/all_nucleic94.nmr.lib
%%DATADIR%%/leap/lib/chcl3box.off
%%DATADIR%%/leap/lib/constph.lib
%%DATADIR%%/leap/lib/dna.amberua.lib
%%DATADIR%%/leap/lib/ff02.cmd
%%DATADIR%%/leap/lib/ff02EP.cmd
%%DATADIR%%/leap/lib/ff03.cmd
%%DATADIR%%/leap/lib/ff03.log
%%DATADIR%%/leap/lib/ff03ua.cmd
%%DATADIR%%/leap/lib/ff91.cmd
%%DATADIR%%/leap/lib/ff94.cmd
%%DATADIR%%/leap/lib/glycam91.cmd
%%DATADIR%%/leap/lib/ions91.cmd
%%DATADIR%%/leap/lib/ions91.lib
%%DATADIR%%/leap/lib/ions94.cmd
%%DATADIR%%/leap/lib/ions94.lib
%%DATADIR%%/leap/lib/meohbox.off
%%DATADIR%%/leap/lib/nmabox.off
%%DATADIR%%/leap/lib/pol3box.off
%%DATADIR%%/leap/lib/pro-dna91.nmr.off
%%DATADIR%%/leap/lib/protein.amberua.lib
%%DATADIR%%/leap/lib/rna.amberua.lib
%%DATADIR%%/leap/lib/solvents.cmd
%%DATADIR%%/leap/lib/solvents.lib
%%DATADIR%%/leap/lib/spcebox.off
%%DATADIR%%/leap/lib/spcfwbox.off
%%DATADIR%%/leap/lib/tip3pbox.off
%%DATADIR%%/leap/lib/tip4pbox.off
%%DATADIR%%/leap/lib/tip4pewbox.off
%%DATADIR%%/leap/lib/uni_amino03.lib
%%DATADIR%%/leap/lib/uni_aminoct03.lib
%%DATADIR%%/leap/lib/uni_aminont03.lib
%%DATADIR%%/leap/parm/frcmod.chcl3
%%DATADIR%%/leap/parm/frcmod.constph
%%DATADIR%%/leap/parm/frcmod.dc4
%%DATADIR%%/leap/parm/frcmod.ff03
%%DATADIR%%/leap/parm/frcmod.ff03ua
%%DATADIR%%/leap/parm/frcmod.ff99SB
%%DATADIR%%/leap/parm/frcmod.ff99SP
%%DATADIR%%/leap/parm/frcmod.meoh
%%DATADIR%%/leap/parm/frcmod.mod_phipsi.1
%%DATADIR%%/leap/parm/frcmod.mod_phipsi.2
%%DATADIR%%/leap/parm/frcmod.nma
%%DATADIR%%/leap/parm/frcmod.pol3
%%DATADIR%%/leap/parm/frcmod.qspcfw
%%DATADIR%%/leap/parm/frcmod.spce
%%DATADIR%%/leap/parm/frcmod.spcfw
%%DATADIR%%/leap/parm/frcmod.tip4p
%%DATADIR%%/leap/parm/frcmod.tip4pew
%%DATADIR%%/leap/parm/frcmod.tip5p
%%DATADIR%%/leap/parm/frcmod.urea
%%DATADIR%%/leap/parm/gaff.dat
%%DATADIR%%/leap/parm/glycam04.dat
%%DATADIR%%/leap/parm/glycam04EP.dat
%%DATADIR%%/leap/parm/nucgen.dat
%%DATADIR%%/leap/parm/opls.info
%%DATADIR%%/leap/parm/opls_parm.dat
%%DATADIR%%/leap/parm/parm91.dat
%%DATADIR%%/leap/parm/parm91X.dat
%%DATADIR%%/leap/parm/parm91X.ua.dat
%%DATADIR%%/leap/parm/parm94.dat
%%DATADIR%%/leap/parm/parm96.dat
%%DATADIR%%/leap/parm/parm98.dat
%%DATADIR%%/leap/parm/parm99.dat
%%DATADIR%%/leap/parm/parm99EP.dat
%%DATADIR%%/leap/parm/parmAM1.dat
%%DATADIR%%/leap/parm/parmPM3.dat
%%DATADIR%%/leap/parm/toyrna.dat
%%DATADIR%%/leap/prep/all.in
%%DATADIR%%/leap/prep/all_amino02.in
%%DATADIR%%/leap/prep/all_amino02EP.in
%%DATADIR%%/leap/prep/all_amino03.in
%%DATADIR%%/leap/prep/all_amino94.in
%%DATADIR%%/leap/prep/all_aminoct02.in
%%DATADIR%%/leap/prep/all_aminoct02EP.in
%%DATADIR%%/leap/prep/all_aminoct94.in
%%DATADIR%%/leap/prep/all_aminont02.in
%%DATADIR%%/leap/prep/all_aminont02EP.in
%%DATADIR%%/leap/prep/all_aminont94.in
%%DATADIR%%/leap/prep/all_nuc02.in
%%DATADIR%%/leap/prep/all_nuc02EP.in
%%DATADIR%%/leap/prep/all_nuc94.in
%%DATADIR%%/leap/prep/allct.in
%%DATADIR%%/leap/prep/allnt.in
%%DATADIR%%/leap/prep/chcl3.in
%%DATADIR%%/leap/prep/glycam04.in
%%DATADIR%%/leap/prep/glycam04EP.in
%%DATADIR%%/leap/prep/meoh.in
%%DATADIR%%/leap/prep/na.amberua.in
%%DATADIR%%/leap/prep/nma.in
%%DATADIR%%/leap/prep/opls_nacl.in
%%DATADIR%%/leap/prep/opls_uni.in
%%DATADIR%%/leap/prep/opls_unict.in
%%DATADIR%%/leap/prep/opls_unint.in
%%DATADIR%%/leap/prep/protein.amberua.C.in
%%DATADIR%%/leap/prep/protein.amberua.N.in
%%DATADIR%%/leap/prep/protein.amberua.in
%%DATADIR%%/leap/prep/toyrna.in
%%DATADIR%%/leap/prep/uni.in
%%DATADIR%%/leap/prep/uni_amino03.in
%%DATADIR%%/leap/prep/uni_aminoct03.in
%%DATADIR%%/leap/prep/uni_aminont03.in
%%DATADIR%%/leap/prep/unict.in
%%DATADIR%%/leap/prep/unint.in
%%DATADIR%%/lib/blas.a
%%DATADIR%%/lib/libblas.a
%%DATADIR%%/lib/cifparse.a
%%DATADIR%%/lib/f2c.a
%%DATADIR%%/lib/libf2c.a
%%DATADIR%%/lib/lapack.a
%%DATADIR%%/lib/liblapack.a
%%DATADIR%%/lib/libnab.a
%%DATADIR%%/lib/libsym.a
%%DATADIR%%/reslib/adna.std.rlb
%%DATADIR%%/reslib/adna.std/adna.std.bnd
%%DATADIR%%/reslib/adna.std/adna.std.pdb
%%DATADIR%%/reslib/ala.off
%%DATADIR%%/reslib/arna.std.rlb
%%DATADIR%%/reslib/arna.std/arna.std.bnd
%%DATADIR%%/reslib/arna.std/arna.std.pdb
%%DATADIR%%/reslib/axes.rlb
%%DATADIR%%/reslib/axes/Axes.bnd
%%DATADIR%%/reslib/axes/XYZ.axes
%%DATADIR%%/reslib/bdna.std.rlb
%%DATADIR%%/reslib/bdna.std/bdna.std.bnd
%%DATADIR%%/reslib/bdna.std/bdna.std.chi
%%DATADIR%%/reslib/bdna.std/bdna.std.pdb
%%DATADIR%%/reslib/bdna.std/dna.qr
%%DATADIR%%/reslib/bounds.db
%%DATADIR%%/reslib/conf.lib
%%DATADIR%%/reslib/dna.amber94.3.rlb
%%DATADIR%%/reslib/dna.amber94.5.rlb
%%DATADIR%%/reslib/dna.amber94.rlb
%%DATADIR%%/reslib/dna.amber94/ade.pdb
%%DATADIR%%/reslib/dna.amber94/dna.amber94.3.bnd
%%DATADIR%%/reslib/dna.amber94/dna.amber94.3.pdb
%%DATADIR%%/reslib/dna.amber94/dna.amber94.3.qr
%%DATADIR%%/reslib/dna.amber94/dna.amber94.35.chi
%%DATADIR%%/reslib/dna.amber94/dna.amber94.5.bnd
%%DATADIR%%/reslib/dna.amber94/dna.amber94.5.pdb
%%DATADIR%%/reslib/dna.amber94/dna.amber94.5.qr
%%DATADIR%%/reslib/dna.amber94/dna.amber94.bnd
%%DATADIR%%/reslib/dna.amber94/dna.amber94.chi
%%DATADIR%%/reslib/dna.amber94/dna.amber94.pdb
%%DATADIR%%/reslib/dna.amber94/dna.amber94.qr
%%DATADIR%%/reslib/dna.amber94/dna.amber94_nmr.3.qr
%%DATADIR%%/reslib/dna.amber94/dna.amber94_nmr.5.qr
%%DATADIR%%/reslib/dna.amber94/dna.amber94_nmr.qr
%%DATADIR%%/reslib/dna.amber94_nmr.3.rlb
%%DATADIR%%/reslib/dna.amber94_nmr.5.rlb
%%DATADIR%%/reslib/dna.amber94_nmr.rlb
%%DATADIR%%/reslib/dna.amberua.3.rlb
%%DATADIR%%/reslib/dna.amberua.5.rlb
%%DATADIR%%/reslib/dna.amberua.rlb
%%DATADIR%%/reslib/dna.amberua/dna.amberua.3.bnd
%%DATADIR%%/reslib/dna.amberua/dna.amberua.3.pdb
%%DATADIR%%/reslib/dna.amberua/dna.amberua.3.qr
%%DATADIR%%/reslib/dna.amberua/dna.amberua.5.bnd
%%DATADIR%%/reslib/dna.amberua/dna.amberua.5.pdb
%%DATADIR%%/reslib/dna.amberua/dna.amberua.5.qr
%%DATADIR%%/reslib/dna.amberua/dna.amberua.bnd
%%DATADIR%%/reslib/dna.amberua/dna.amberua.chi
%%DATADIR%%/reslib/dna.amberua/dna.amberua.pdb
%%DATADIR%%/reslib/dna.amberua/dna.amberua.qr
%%DATADIR%%/reslib/dna3.rlb
%%DATADIR%%/reslib/dna3/dna3.bnd
%%DATADIR%%/reslib/dna3/dna3.chi
%%DATADIR%%/reslib/dna3/dna3.pdb
%%DATADIR%%/reslib/dna3/dna3.qr
%%DATADIR%%/reslib/hetatm.amber94.rlb
%%DATADIR%%/reslib/hetatm.amber94/hetatm.amber94.bnd
%%DATADIR%%/reslib/hetatm.amber94/hetatm.amber94.chi
%%DATADIR%%/reslib/hetatm.amber94/hetatm.amber94.pdb
%%DATADIR%%/reslib/hetatm.amber94/hetatm.amber94.qr
%%DATADIR%%/reslib/off2star
%%DATADIR%%/reslib/parm94.star
%%DATADIR%%/reslib/pep1.off
%%DATADIR%%/reslib/pro-dna.nmr/pro-dna.nmr.input
%%DATADIR%%/reslib/pro-dna.nmr/pro-dna.nmr.off
%%DATADIR%%/reslib/pro-dna.nmr/pro-dna.nmr.star
%%DATADIR%%/reslib/protein.amber94.C.rlb
%%DATADIR%%/reslib/protein.amber94.N.rlb
%%DATADIR%%/reslib/protein.amber94.rlb
%%DATADIR%%/reslib/protein.amber94/protein.amber94.C.bnd
%%DATADIR%%/reslib/protein.amber94/protein.amber94.C.pdb
%%DATADIR%%/reslib/protein.amber94/protein.amber94.C.qr
%%DATADIR%%/reslib/protein.amber94/protein.amber94.N.bnd
%%DATADIR%%/reslib/protein.amber94/protein.amber94.N.pdb
%%DATADIR%%/reslib/protein.amber94/protein.amber94.N.qr
%%DATADIR%%/reslib/protein.amber94/protein.amber94.NC.chi
%%DATADIR%%/reslib/protein.amber94/protein.amber94.bnd
%%DATADIR%%/reslib/protein.amber94/protein.amber94.chi
%%DATADIR%%/reslib/protein.amber94/protein.amber94.pdb
%%DATADIR%%/reslib/protein.amber94/protein.amber94.qr
%%DATADIR%%/reslib/protein.amber94/protein.amber94_nmr.qr
%%DATADIR%%/reslib/protein.amber94_nmr.rlb
%%DATADIR%%/reslib/protein.opls.rlb
%%DATADIR%%/reslib/protein.opls/protein.opls.bnd
%%DATADIR%%/reslib/protein.opls/protein.opls.chi
%%DATADIR%%/reslib/protein.opls/protein.opls.pdb
%%DATADIR%%/reslib/protein.opls/protein.opls.qr
%%DATADIR%%/reslib/rna.amber94.3.rlb
%%DATADIR%%/reslib/rna.amber94.5.rlb
%%DATADIR%%/reslib/rna.amber94.rlb
%%DATADIR%%/reslib/rna.amber94/rna.amber94.3.bnd
%%DATADIR%%/reslib/rna.amber94/rna.amber94.3.pdb
%%DATADIR%%/reslib/rna.amber94/rna.amber94.3.qr
%%DATADIR%%/reslib/rna.amber94/rna.amber94.5.bnd
%%DATADIR%%/reslib/rna.amber94/rna.amber94.5.pdb
%%DATADIR%%/reslib/rna.amber94/rna.amber94.5.qr
%%DATADIR%%/reslib/rna.amber94/rna.amber94.bnd
%%DATADIR%%/reslib/rna.amber94/rna.amber94.chi
%%DATADIR%%/reslib/rna.amber94/rna.amber94.pdb
%%DATADIR%%/reslib/rna.amber94/rna.amber94.qr
%%DATADIR%%/reslib/rna.amber94/rna.amber94_nmr.3.qr
%%DATADIR%%/reslib/rna.amber94/rna.amber94_nmr.5.qr
%%DATADIR%%/reslib/rna.amber94/rna.amber94_nmr.qr
%%DATADIR%%/reslib/rna.amber94_nmr.3.rlb
%%DATADIR%%/reslib/rna.amber94_nmr.5.rlb
%%DATADIR%%/reslib/rna.amber94_nmr.rlb
%%DATADIR%%/reslib/rna.amberua.3.rlb
%%DATADIR%%/reslib/rna.amberua.5.rlb
%%DATADIR%%/reslib/rna.amberua.rlb
%%DATADIR%%/reslib/rna.amberua/rna.amberua.3.bnd
%%DATADIR%%/reslib/rna.amberua/rna.amberua.3.pdb
%%DATADIR%%/reslib/rna.amberua/rna.amberua.3.qr
%%DATADIR%%/reslib/rna.amberua/rna.amberua.5.bnd
%%DATADIR%%/reslib/rna.amberua/rna.amberua.5.pdb
%%DATADIR%%/reslib/rna.amberua/rna.amberua.5.qr
%%DATADIR%%/reslib/rna.amberua/rna.amberua.bnd
%%DATADIR%%/reslib/rna.amberua/rna.amberua.chi
%%DATADIR%%/reslib/rna.amberua/rna.amberua.pdb
%%DATADIR%%/reslib/rna.amberua/rna.amberua.qr
%%DATADIR%%/test/2.pdb
%%DATADIR%%/test/5pti.obs
%%DATADIR%%/test/5pti.pdb
%%DATADIR%%/test/5pti.shifts.check
%%DATADIR%%/test/Makefile
%%DATADIR%%/test/asp.nab
%%DATADIR%%/test/asp.out.check
%%DATADIR%%/test/asp.pdb
%%DATADIR%%/test/asp.top
%%DATADIR%%/test/aspnb.nab
%%DATADIR%%/test/aspnb.out.check
%%DATADIR%%/test/cif.nab
%%DATADIR%%/test/crambin.nab
%%DATADIR%%/test/crambin.out.check
%%DATADIR%%/test/crambin.pdb
%%DATADIR%%/test/crambin.top
%%DATADIR%%/test/crambin.x
%%DATADIR%%/test/d01.lin.check
%%DATADIR%%/test/d01.pdb.check
%%DATADIR%%/test/dg_gyrate.nab
%%DATADIR%%/test/dg_gyrate.out.check
%%DATADIR%%/test/dg_gyrate2.nab
%%DATADIR%%/test/dhfrndpmtx.ambpdb
%%DATADIR%%/test/dhfrndpmtx.nab
%%DATADIR%%/test/dhfrndpmtx.out.check
%%DATADIR%%/test/dhfrndpmtx.prmtop
%%DATADIR%%/test/dna.circle.nab
%%DATADIR%%/test/duplex.in
%%DATADIR%%/test/duplex.nab
%%DATADIR%%/test/fd.nab
%%DATADIR%%/test/fd.pdb.check
%%DATADIR%%/test/gbrna.cif.check
%%DATADIR%%/test/gbrna.nab
%%DATADIR%%/test/gbrna.out.check
%%DATADIR%%/test/gbrna.pdb
%%DATADIR%%/test/gbrna.prmtop
%%DATADIR%%/test/gbrna_long.nab
%%DATADIR%%/test/gbrna_long.out.check
%%DATADIR%%/test/gbtrx.nab
%%DATADIR%%/test/gbtrx.out.check
%%DATADIR%%/test/get_pep_info.nab
%%DATADIR%%/test/get_ring_info.nab
%%DATADIR%%/test/get_sugar_info.nab
%%DATADIR%%/test/getresid_from_pdb.nab
%%DATADIR%%/test/hash.in
%%DATADIR%%/test/hash.nab
%%DATADIR%%/test/hash.out.check
%%DATADIR%%/test/ico.sym
%%DATADIR%%/test/ico.sym.out.check
%%DATADIR%%/test/ltest.nab
%%DATADIR%%/test/ltest.out.check
%%DATADIR%%/test/mm_plus_dg.nab
%%DATADIR%%/test/pointplane.nab
%%DATADIR%%/test/prm.nab
%%DATADIR%%/test/prm.out.check
%%DATADIR%%/test/prmtop
%%DATADIR%%/test/prmtop.gb2
%%DATADIR%%/test/pseudoknot.nab
%%DATADIR%%/test/rattle_md.nab
%%DATADIR%%/test/rattle_md.out.check
%%DATADIR%%/test/rattle_min.nab
%%DATADIR%%/test/rattle_min.out.check
%%DATADIR%%/test/read_obs_shifts.nab
%%DATADIR%%/test/ref.out.check
%%DATADIR%%/test/reflexive.nab
%%DATADIR%%/test/rembed.nab
%%DATADIR%%/test/rembed.out.check
%%DATADIR%%/test/sbcoil.nab
%%DATADIR%%/test/shifts.h
%%DATADIR%%/test/shifts.nab
%%DATADIR%%/test/swap_shifts.nab
%%DATADIR%%/test/tbv.60.com.pdb.check
%%DATADIR%%/test/tbv.com.pdb
%%DATADIR%%/test/tprmtop.check
%%DATADIR%%/test/trxox.2.4ns.pdb
%%DATADIR%%/test/trxox.2.4ns.x
%%DATADIR%%/test/vizgrad.nab
%%DATADIR%%/test/vizgrad.pdb
%%DATADIR%%/test/vizgrad.prm
%%DATADIR%%/test/write_sander_inp.nab
@@dirrm %%DATADIR%%/test
@@dirrm %%DATADIR%%/reslib/rna.amberua
@@dirrm %%DATADIR%%/reslib/rna.amber94
@@dirrm %%DATADIR%%/reslib/protein.opls
@@dirrm %%DATADIR%%/reslib/protein.amber94
@@dirrm %%DATADIR%%/reslib/pro-dna.nmr
@@dirrm %%DATADIR%%/reslib/hetatm.amber94
@@dirrm %%DATADIR%%/reslib/dna3
@@dirrm %%DATADIR%%/reslib/dna.amberua
@@dirrm %%DATADIR%%/reslib/dna.amber94
@@dirrm %%DATADIR%%/reslib/bdna.std
@@dirrm %%DATADIR%%/reslib/axes
@@dirrm %%DATADIR%%/reslib/arna.std
@@dirrm %%DATADIR%%/reslib/adna.std
@@dirrm %%DATADIR%%/reslib
@@dirrm %%DATADIR%%/lib
@@dirrm %%DATADIR%%/leap/prep
@@dirrm %%DATADIR%%/leap/parm
@@dirrm %%DATADIR%%/leap/lib
@@dirrm %%DATADIR%%/leap/cmd
@@dirrm %%DATADIR%%/leap
@@dirrm %%DATADIR%%/include
@@dirrm %%DATADIR%%/fd_data
@@dirrm %%DATADIR%%/examples
@@dirrm %%DATADIR%%/dgdb/stacking
@@dirrm %%DATADIR%%/dgdb/basepairs
@@dirrm %%DATADIR%%/dgdb
@@dirrm %%DATADIR%%/bin
@@dirrm %%DATADIR%%/benchmarks
@@dirrm %%DATADIR%%
%%PORTDOCS%%@@dirrm %%DOCSDIR%%
@


1.13
log
@- Allow build with AMD64
- Fix pkg-plist
- Bump PORTREVISION

PR:		117435
Submitted by:	"M. L. Dodson" <mldodson@@comcast.net> (maintainer)
@
text
@@


1.12
log
@- Update to 5.1.2
- Update maintainer mail adresse

PR:		ports/107118
Submitted by:	M. L. Dodson <bdodson@@houston.rr.com> (maintainer)
@
text
@d482 1
d485 1
d487 1
@


1.11
log
@- Fix the packing list [1]
- Add a run dependency on ucpp
- Correct the NABHOME used in pre-install

PR:		ports/80457
Submitted by:	maintainer
Reported by:	pointyhat [1]
@
text
@d20 41
a60 15
%%PORTDOCS%%%%DATADIR%%/benchmarks/gbrna.nab
%%PORTDOCS%%%%DATADIR%%/benchmarks/gbrna.out.check
%%PORTDOCS%%%%DATADIR%%/benchmarks/gcn4_md.nab
%%PORTDOCS%%%%DATADIR%%/benchmarks/gcn4_nr.nab
%%PORTDOCS%%%%DATADIR%%/benchmarks/gcn4p1.mc.pdb
%%PORTDOCS%%%%DATADIR%%/benchmarks/mb.inpcrd
%%PORTDOCS%%%%DATADIR%%/benchmarks/mb.nab
%%PORTDOCS%%%%DATADIR%%/benchmarks/mb.out.check
%%PORTDOCS%%%%DATADIR%%/benchmarks/mb.pdb
%%PORTDOCS%%%%DATADIR%%/benchmarks/mb.prmtop
%%PORTDOCS%%%%DATADIR%%/benchmarks/p450.md1.x
%%PORTDOCS%%%%DATADIR%%/benchmarks/p450.nab
%%PORTDOCS%%%%DATADIR%%/benchmarks/p450.out.check
%%PORTDOCS%%%%DATADIR%%/benchmarks/p450.pdb
%%PORTDOCS%%%%DATADIR%%/benchmarks/p450.prmtop
d72 1
d279 38
a316 39
%%PORTDOCS%%%%DATADIR%%/examples/ADE.pdb
%%PORTDOCS%%%%DATADIR%%/examples/Makefile
%%PORTDOCS%%%%DATADIR%%/examples/README
%%PORTDOCS%%%%DATADIR%%/examples/THY.pdb
%%PORTDOCS%%%%DATADIR%%/examples/acgtacgt.pdb
%%PORTDOCS%%%%DATADIR%%/examples/aua.triad.min.pdb
%%PORTDOCS%%%%DATADIR%%/examples/cgc.triad.min.pdb
%%PORTDOCS%%%%DATADIR%%/examples/gcg.triad.min.pdb
%%PORTDOCS%%%%DATADIR%%/examples/gcg10.pdb
%%PORTDOCS%%%%DATADIR%%/examples/gcg10.pdb.save
%%PORTDOCS%%%%DATADIR%%/examples/getbase.nab
%%PORTDOCS%%%%DATADIR%%/examples/mme_typical_calling_sequence.nab
%%PORTDOCS%%%%DATADIR%%/examples/program_1.nab
%%PORTDOCS%%%%DATADIR%%/examples/program_10.nab
%%PORTDOCS%%%%DATADIR%%/examples/program_11.nab
%%PORTDOCS%%%%DATADIR%%/examples/program_12.nab
%%PORTDOCS%%%%DATADIR%%/examples/program_13.nab
%%PORTDOCS%%%%DATADIR%%/examples/program_14.nab
%%PORTDOCS%%%%DATADIR%%/examples/program_2.nab
%%PORTDOCS%%%%DATADIR%%/examples/program_2.ref
%%PORTDOCS%%%%DATADIR%%/examples/program_3.nab
%%PORTDOCS%%%%DATADIR%%/examples/program_4.nab
%%PORTDOCS%%%%DATADIR%%/examples/program_4.ref
%%PORTDOCS%%%%DATADIR%%/examples/program_5.ata.in
%%PORTDOCS%%%%DATADIR%%/examples/program_5.cgc.in
%%PORTDOCS%%%%DATADIR%%/examples/program_5.gcg.in
%%PORTDOCS%%%%DATADIR%%/examples/program_5.nab
%%PORTDOCS%%%%DATADIR%%/examples/program_5.tat.in
%%PORTDOCS%%%%DATADIR%%/examples/program_6.nab
%%PORTDOCS%%%%DATADIR%%/examples/program_7.nab
%%PORTDOCS%%%%DATADIR%%/examples/program_7.nab.orig
%%PORTDOCS%%%%DATADIR%%/examples/program_8.nab
%%PORTDOCS%%%%DATADIR%%/examples/program_9.nab
%%PORTDOCS%%%%DATADIR%%/examples/rna_pseudoknot.pdb
%%PORTDOCS%%%%DATADIR%%/examples/spline.nab
%%PORTDOCS%%%%DATADIR%%/examples/tat.triad.min.pdb
%%PORTDOCS%%%%DATADIR%%/examples/test.pdb
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@


1.10
log
@- Update to 5.0
- Cleanups

PR:		ports/80372
Submitted by:	maintainer
@
text
@a586 1
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@


1.9
log
@Update to 4.6

PR:		ports/68561
Submitted by:	maintainer
@
text
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%%DOCSDIR%%/NAB.pdf
share/nab/bin/matextract
share/nab/bin/matgen
share/nab/bin/matmerge
share/nab/bin/matmul
share/nab/bin/nab
share/nab/bin/nab2c
share/nab/bin/teLeap
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share/nab/coords
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share/nab/dgdb/adna.nucleotide.db
share/nab/dgdb/adna.stack.db
share/nab/dgdb/arna.basepair.db
share/nab/dgdb/arna.nucleotide.db
share/nab/dgdb/arna.stack.db
share/nab/dgdb/bdna.basepair.db
share/nab/dgdb/bdna.nucleotide.db
share/nab/dgdb/bdna.stack.db
share/nab/dgdb/dna.basepair.db
share/nab/dgdb/rna.basepair.db
share/nab/dgdb/trna.basepair.db
share/nab/dgdb/trna.nucleotide.db
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share/nab/examples/ADE.pdb
share/nab/examples/Makefile
share/nab/examples/README
share/nab/examples/THY.pdb
share/nab/examples/acgtacgt.pdb
share/nab/examples/gcg10.pdb
share/nab/examples/gcg10.pdb.save
share/nab/examples/getbase.nab
share/nab/examples/mme_typical_calling_sequence.nab
share/nab/examples/program_1.nab
share/nab/examples/program_10.nab
share/nab/examples/program_11.nab
share/nab/examples/program_12.nab
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share/nab/examples/program_2.nab
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share/nab/examples/rna_pseudoknot.pdb
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share/nab/examples/test.sup.pdb
share/nab/fd_data/abdna.dat
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share/nab/reslib/dna.amberua/dna.amberua.chi
share/nab/reslib/dna.amberua/dna.amberua.pdb
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share/nab/reslib/dna3.rlb
share/nab/reslib/dna3/dna3.bnd
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share/nab/reslib/dna3/dna3.pdb
share/nab/reslib/dna3/dna3.qr
share/nab/reslib/hetatm.amber94.rlb
share/nab/reslib/hetatm.amber94/hetatm.amber94.bnd
share/nab/reslib/hetatm.amber94/hetatm.amber94.chi
share/nab/reslib/hetatm.amber94/hetatm.amber94.pdb
share/nab/reslib/hetatm.amber94/hetatm.amber94.qr
share/nab/reslib/leap/0README
share/nab/reslib/leap/Notes
share/nab/reslib/leap/all_amino91.lib
share/nab/reslib/leap/all_amino94.lib
share/nab/reslib/leap/all_aminoct91.lib
share/nab/reslib/leap/all_aminoct94.lib
share/nab/reslib/leap/all_aminont91.lib
share/nab/reslib/leap/all_aminont94.lib
share/nab/reslib/leap/all_nucleic91.lib
share/nab/reslib/leap/all_nucleic94.lib
share/nab/reslib/leap/dna.amberua.lib
share/nab/reslib/leap/dna.amberua.redch.lib
share/nab/reslib/leap/ions91.lib
share/nab/reslib/leap/ions94.lib
share/nab/reslib/leap/leaprc.dna.amberua
share/nab/reslib/leap/leaprc.dna.amberua.redch
share/nab/reslib/leap/leaprc.nmr
share/nab/reslib/leap/leaprc.protein.amberua
share/nab/reslib/leap/leaprc.ff03
share/nab/reslib/leap/solvents.lib
share/nab/reslib/leap/frcmod.ff03
share/nab/reslib/leap/all_amino03.lib
share/nab/reslib/leap/parm99.dat
share/nab/reslib/leap/leaprc.rna
share/nab/reslib/leap/leaprc.rna.amberua
share/nab/reslib/leap/leaprc.std
share/nab/reslib/leap/leaprc.stdX
share/nab/reslib/leap/na.amberua.prepin
share/nab/reslib/leap/opls_parm.dat
share/nab/reslib/leap/parm91.lib
share/nab/reslib/leap/parm91X.dat
share/nab/reslib/leap/parm91X.ua.dat
share/nab/reslib/leap/parm94.dat
share/nab/reslib/leap/parm94X.dat
share/nab/reslib/leap/pro-dna91.nmr.lib
share/nab/reslib/leap/pro-dna91.nmr.prepin
share/nab/reslib/leap/protein.amberua.C.prepin
share/nab/reslib/leap/protein.amberua.N.prepin
share/nab/reslib/leap/protein.amberua.lib
share/nab/reslib/leap/protein.amberua.prepin
share/nab/reslib/leap/protein.opls.lib
share/nab/reslib/leap/rna.amberua.lib
share/nab/reslib/leap/water.lib
share/nab/reslib/off2star
share/nab/reslib/parm94.star
share/nab/reslib/pep1.off
share/nab/reslib/pro-dna.nmr/pro-dna.nmr.input
share/nab/reslib/pro-dna.nmr/pro-dna.nmr.off
share/nab/reslib/pro-dna.nmr/pro-dna.nmr.star
share/nab/reslib/protein.amber94.C.rlb
share/nab/reslib/protein.amber94.N.rlb
share/nab/reslib/protein.amber94.rlb
share/nab/reslib/protein.amber94/protein.amber94.C.bnd
share/nab/reslib/protein.amber94/protein.amber94.C.pdb
share/nab/reslib/protein.amber94/protein.amber94.C.qr
share/nab/reslib/protein.amber94/protein.amber94.N.bnd
share/nab/reslib/protein.amber94/protein.amber94.N.pdb
share/nab/reslib/protein.amber94/protein.amber94.N.qr
share/nab/reslib/protein.amber94/protein.amber94.NC.chi
share/nab/reslib/protein.amber94/protein.amber94.bnd
share/nab/reslib/protein.amber94/protein.amber94.chi
share/nab/reslib/protein.amber94/protein.amber94.pdb
share/nab/reslib/protein.amber94/protein.amber94.qr
share/nab/reslib/protein.amber94/protein.amber94_nmr.qr
share/nab/reslib/protein.amber94_nmr.rlb
share/nab/reslib/protein.opls.rlb
share/nab/reslib/protein.opls/protein.opls.bnd
share/nab/reslib/protein.opls/protein.opls.chi
share/nab/reslib/protein.opls/protein.opls.pdb
share/nab/reslib/protein.opls/protein.opls.qr
share/nab/reslib/rna.amber94.3.rlb
share/nab/reslib/rna.amber94.5.rlb
share/nab/reslib/rna.amber94.rlb
share/nab/reslib/rna.amber94/rna.amber94.3.bnd
share/nab/reslib/rna.amber94/rna.amber94.3.pdb
share/nab/reslib/rna.amber94/rna.amber94.3.qr
share/nab/reslib/rna.amber94/rna.amber94.5.bnd
share/nab/reslib/rna.amber94/rna.amber94.5.pdb
share/nab/reslib/rna.amber94/rna.amber94.5.qr
share/nab/reslib/rna.amber94/rna.amber94.bnd
share/nab/reslib/rna.amber94/rna.amber94.chi
share/nab/reslib/rna.amber94/rna.amber94.pdb
share/nab/reslib/rna.amber94/rna.amber94.qr
share/nab/reslib/rna.amber94/rna.amber94_nmr.3.qr
share/nab/reslib/rna.amber94/rna.amber94_nmr.5.qr
share/nab/reslib/rna.amber94/rna.amber94_nmr.qr
share/nab/reslib/rna.amber94_nmr.3.rlb
share/nab/reslib/rna.amber94_nmr.5.rlb
share/nab/reslib/rna.amber94_nmr.rlb
share/nab/reslib/rna.amberua.3.rlb
share/nab/reslib/rna.amberua.5.rlb
share/nab/reslib/rna.amberua.rlb
share/nab/reslib/rna.amberua/rna.amberua.3.bnd
share/nab/reslib/rna.amberua/rna.amberua.3.pdb
share/nab/reslib/rna.amberua/rna.amberua.3.qr
share/nab/reslib/rna.amberua/rna.amberua.5.bnd
share/nab/reslib/rna.amberua/rna.amberua.5.pdb
share/nab/reslib/rna.amberua/rna.amberua.5.qr
share/nab/reslib/rna.amberua/rna.amberua.bnd
share/nab/reslib/rna.amberua/rna.amberua.chi
share/nab/reslib/rna.amberua/rna.amberua.pdb
share/nab/reslib/rna.amberua/rna.amberua.qr
share/nab/suppose/Makefile
share/nab/suppose/PCA_suppose.nab
share/nab/suppose/ccmath.h
share/nab/suppose/eigen.c
share/nab/suppose/housev.c
share/nab/suppose/matutl.h
share/nab/suppose/qrevec.c
share/nab/suppose/suppose.1
share/nab/suppose/suppose.nab
share/nab/suppose/trnm.c
share/nab/test/2.pdb
share/nab/test/5pti.obs
share/nab/test/5pti.pdb
share/nab/test/5pti.shifts.check
share/nab/test/d01.lin.check
share/nab/test/d01.pdb.check
share/nab/test/dhfrndpmtx.prmtop
share/nab/test/dg_gyrate.nab
share/nab/test/dg_gyrate.out.check
share/nab/test/dg_gyrate2.nab
share/nab/test/dhfrndpmtx.ambpdb
share/nab/test/dhfrndpmtx.nab
share/nab/test/dhfrndpmtx.out.check
share/nab/test/dna.circle.nab
share/nab/test/duplex.in
share/nab/test/duplex.nab
share/nab/test/fd.nab
share/nab/test/fd.pdb.check
share/nab/test/gbrna.nab
share/nab/test/gbrna.out.check
share/nab/test/gbrna.pdb
share/nab/test/gbrna.prmtop
share/nab/test/gbrna_long.nab
share/nab/test/gbtrx.nab
share/nab/test/gbtrx.out.check
share/nab/test/get_pep_info.nab
share/nab/test/get_ring_info.nab
share/nab/test/get_sugar_info.nab
share/nab/test/getresid_from_pdb.nab
share/nab/test/hash.in
share/nab/test/hash.nab
share/nab/test/hash.out.check
share/nab/test/ico.sym
share/nab/test/ico.sym.out.check
share/nab/test/ltest.nab
share/nab/test/ltest.out.check
share/nab/test/mm_plus_dg.nab
share/nab/test/pointplane.nab
share/nab/test/prmtop
share/nab/test/prmtop.gb2
share/nab/test/pseudoknot.nab
share/nab/test/rattle_md.nab
share/nab/test/rattle_md.out.check
share/nab/test/rattle_min.nab
share/nab/test/rattle_min.out.check
share/nab/test/read_obs_shifts.nab
share/nab/test/reflexive.nab
share/nab/test/reflexive.out
share/nab/test/rembed.nab
share/nab/test/rembed.out.check
share/nab/test/sbcoil.nab
share/nab/test/shifts.h
share/nab/test/shifts.nab
share/nab/test/swap_shifts.nab
share/nab/test/tbv.60.com.pdb.check
share/nab/test/tbv.com.pdb
share/nab/test/trxox.2.4ns.pdb
share/nab/test/trxox.2.4ns.x
share/nab/test/write_sander_inp.nab
@@dirrm share/nab/test
@@dirrm share/nab/suppose
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@@dirrm share/nab/reslib/rna.amber94
@@dirrm share/nab/reslib/protein.opls
@@dirrm share/nab/reslib/protein.amber94
@@dirrm share/nab/reslib/pro-dna.nmr
@@dirrm share/nab/reslib/leap
@@dirrm share/nab/reslib/hetatm.amber94
@@dirrm share/nab/reslib/dna3
@@dirrm share/nab/reslib/dna.amberua
@@dirrm share/nab/reslib/dna.amber94
@@dirrm share/nab/reslib/bdna.std
@@dirrm share/nab/reslib/axes
@@dirrm share/nab/reslib/arna.std
@@dirrm share/nab/reslib/adna.std
@@dirrm share/nab/reslib
@@dirrm share/nab/peptide
@@dirrm share/nab/lib
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@@dirrm share/nab/fd_data
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@@dirrm share/nab/dgdb/stacking
@@dirrm share/nab/dgdb/basepairs
@@dirrm share/nab/dgdb
@@dirrm share/nab/bin
@@dirrm share/nab
@@dirrm %%DOCSDIR%%
@


1.8
log
@- update to 4.5.3
- remove version from pkg-descr

PR:		65972
Submitted by:	maintainer
@
text
@d12 4
a76 3
share/nab/dgdb/basepairs/CVS/Entries
share/nab/dgdb/basepairs/CVS/Repository
share/nab/dgdb/basepairs/CVS/Root
a145 3
share/nab/dgdb/stacking/CVS/Entries
share/nab/dgdb/stacking/CVS/Repository
share/nab/dgdb/stacking/CVS/Root
d245 1
a300 2
share/nab/reslib/cdd.mol2
share/nab/reslib/charlie.star.note
a345 1
share/nab/reslib/leap.log
a359 2
share/nab/reslib/leap/parm94.dat.istvan
share/nab/reslib/leap/leap.log
d364 5
a447 1
share/nab/reslib/syblCDD.lib
d464 1
d467 4
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share/nab/test/gbrna_sa.nab
d494 1
a494 1
share/nab/test/msurf.nab
d498 1
a498 1
share/nab/test/prmtop.new
a516 12
share/nab/test/lCmd
share/nab/test/1ubq/1ubq.pdb
share/nab/test/1ubq/5pti.pdb
share/nab/test/1ubq/leap.log
share/nab/test/1ubq/out.1
share/nab/test/1ubq/prmtop
share/nab/test/1ubq/prmtop.1
share/nab/test/1ubq/rattle_min.nab
share/nab/test/1ubq/runleap.nab
share/nab/test/2strand.nab
share/nab/test/2strand.pdb
@@dirrm share/nab/test/1ubq
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a539 1
@@dirrm share/nab/dgdb/basepairs/CVS
@


1.7
log
@Cosmetic fix: use %%DOCSDIR%% macro.
No functionally changes.

Submitted by:	Oleg Karachevtsev <ok@@etrust.ru>
A part of PR:	57992
@
text
@a11 4
include/defreal.h
include/nab.h
include/nabcode.h
include/nabtypes.h
d45 194
d276 1
d549 4
@


1.6
log
@update biology/nab: 4.5.1 -> 4.5.2

PR:		57970
Submitted by:	M. L. Dodson <bdodson@@scms.utmb.edu> (maintainer)
@
text
@d19 1
a19 1
share/doc/nab/NAB.pdf
d361 1
a361 1
@@dirrm share/doc/nab
@


1.5
log
@update biology/nab: 4.4 -> 4.5.1

PR:		52786
Submitted by:	M. L. Dodson <bdodson@@scms.utmb.EDU> (maintainer)
@
text
@a80 1
share/nab/fd_data/abdna.dat.old
d173 1
a272 1
share/nab/test/a.exe
a277 1
share/nab/test/duplex.exe
a285 1
share/nab/test/gbrna_long.exe
d287 1
a287 1
share/nab/test/gbrna_long.out
d301 1
d305 1
d324 12
@


1.4
log
@upgrade to 4.4

PR:		40612
Submitted by:	maintainer
@
text
@a11 1
bin/ucpp
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d24 2
d27 2
a29 3
share/nab/bin/matgen
share/nab/bin/nab
share/nab/bin/transform
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share/nab/bin/matmerge
share/nab/bin/nab2c
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share/nab/bin/ucpp
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share/nab/examples/ADE.pdb
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share/nab/examples/program_8.nab
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d239 15
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share/nab/reslib/rna.amberua/rna.amberua.qr
share/nab/reslib/rna.amberua/rna.amberua.pdb
d256 2
a257 38
share/nab/reslib/rna.amberua/rna.amberua.3.qr
share/nab/reslib/rna.amberua/rna.amberua.5.qr
share/nab/reslib/rna.amberua/rna.amberua.3.pdb
share/nab/reslib/rna.amberua/rna.amberua.3.bnd
share/nab/reslib/rna.amberua/rna.amberua.5.pdb
share/nab/reslib/rna.amberua/rna.amberua.5.bnd
share/nab/reslib/dna.amberua/dna.amberua.pdb
share/nab/reslib/dna.amberua/dna.amberua.bnd
share/nab/reslib/dna.amberua/dna.amberua.chi
share/nab/reslib/dna.amberua/dna.amberua.3.qr
share/nab/reslib/dna.amberua/dna.amberua.5.qr
share/nab/reslib/dna.amberua/dna.amberua.qr
share/nab/reslib/dna.amberua/dna.amberua.3.bnd
share/nab/reslib/dna.amberua/dna.amberua.3.pdb
share/nab/reslib/dna.amberua/dna.amberua.5.bnd
share/nab/reslib/dna.amberua/dna.amberua.5.pdb
share/nab/reslib/protein.amber94/protein.amber94.NC.chi
share/nab/reslib/protein.amber94/protein.amber94.C.qr
share/nab/reslib/protein.amber94/protein.amber94.N.qr
share/nab/reslib/protein.amber94/protein.amber94.C.pdb
share/nab/reslib/protein.amber94/protein.amber94.C.bnd
share/nab/reslib/protein.amber94/protein.amber94.qr
share/nab/reslib/protein.amber94/protein.amber94.N.pdb
share/nab/reslib/protein.amber94/protein.amber94.N.bnd
share/nab/reslib/protein.amber94/protein.amber94.chi
share/nab/reslib/protein.amber94/protein.amber94.bnd
share/nab/reslib/protein.amber94/protein.amber94.pdb
share/nab/reslib/protein.amber94/protein.amber94_nmr.qr
share/nab/reslib/protein.opls.rlb
share/nab/reslib/conf.lib
share/nab/reslib/pro-dna.nmr/pro-dna.nmr.star
share/nab/reslib/pro-dna.nmr/pro-dna.nmr.input
share/nab/reslib/pro-dna.nmr/pro-dna.nmr.off
share/nab/reslib/dna.amberua.rlb
share/nab/reslib/rna.amberua.rlb
share/nab/reslib/protein.amber94.N.rlb
share/nab/reslib/rna.amber94_nmr.3.rlb
share/nab/reslib/dna.amber94_nmr.3.rlb
d259 66
a324 35
share/nab/reslib/dna.amberua.3.rlb
share/nab/reslib/rna.amberua.3.rlb
share/nab/reslib/rna.amber94.3.rlb
share/nab/reslib/dna.amber94.3.rlb
share/nab/reslib/cdd.mol2
share/nab/reslib/rna.amber94_nmr.5.rlb
share/nab/reslib/dna.amber94_nmr.5.rlb
share/nab/reslib/dna.amber94_nmr.rlb
share/nab/reslib/protein.amber94.rlb
share/nab/reslib/rna.amber94.rlb
share/nab/reslib/dna.amber94.rlb
share/nab/reslib/dna.amberua.5.rlb
share/nab/reslib/rna.amberua.5.rlb
share/nab/reslib/rna.amber94.5.rlb
share/nab/reslib/dna.amber94.5.rlb
share/nab/fd_data/adna.dat
share/nab/fd_data/arna.dat
share/nab/fd_data/sbdna.dat
share/nab/fd_data/abdna.dat
share/nab/fd_data/aprna.dat
share/nab/fd_data/lbdna.dat
share/nab/fd_data/abdna.dat.old
share/nab/coords
share/nab/lib/cifparse.a
share/nab/lib/libnab.a
share/nab/lib/libsym.a
share/nab/include/defreal.h
share/nab/include/nab.h
share/nab/include/nabcode.h
share/nab/include/nabtypes.h
@@dirrm share/doc/nab
@@dirrm share/nab/bin
@@dirrm share/nab/lib
@@dirrm share/nab/include
@@dirrm share/nab/examples
a325 1
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d327 6
a332 1
@@dirrm share/nab/dgdb
a333 1
@@dirrm share/nab/reslib/axes
d335 2
a336 1
@@dirrm share/nab/reslib/leap
d338 1
a340 7
@@dirrm share/nab/reslib/protein.opls
@@dirrm share/nab/reslib/dna.amber94
@@dirrm share/nab/reslib/rna.amber94
@@dirrm share/nab/reslib/rna.amberua
@@dirrm share/nab/reslib/dna.amberua
@@dirrm share/nab/reslib/protein.amber94
@@dirrm share/nab/reslib/pro-dna.nmr
d342 3
d346 3
d350 1
@


1.3
log
@Remove a patch turd from the pkg-plist
@
text
@a103 11
share/nab/peptide/COPYING
share/nab/peptide/aaaa.pdb
share/nab/peptide/lprot.nab
share/nab/peptide/write_pdb.nab
share/nab/peptide/README
share/nab/peptide/Makefile
share/nab/peptide/conf.lib
share/nab/peptide/peptide.nab
share/nab/peptide/match_template.nab
share/nab/peptide/peptide.c
share/nab/peptide/fix_angles.nab
d123 2
d295 1
@


1.2
log
@upgrade to 4.3.2

PR:		27273
Submitted by:	maintainer
@
text
@a63 1
share/nab/examples/program_7.nab.orig
@


1.1
log
@Initiail version of nab (4.2)

PR:		21585
Submitted by:	M. L. Dodson <bdodson@@scms.utmb.EDU>
@
text
@d1 4
d8 12
d21 12
a32 21
share/nab/lib/libnab.a
share/nab/include/nabcode.h
share/nab/include/nab.h
share/nab/include/defreal.h
share/nab/include/nabtypes.h
share/nab/examples/program_1.nab
share/nab/examples/program_2.nab
share/nab/examples/program_3.nab
share/nab/examples/program_4.nab
share/nab/examples/program_5.nab
share/nab/examples/program_6.nab
share/nab/examples/program_7.nab
share/nab/examples/program_7.nab.orig
share/nab/examples/README
share/nab/examples/program_9.nab
share/nab/examples/program_10.nab
share/nab/examples/program_11.nab
share/nab/examples/program_12.nab
share/nab/examples/program_13.nab
share/nab/examples/program_14.nab
share/nab/examples/program_8.nab
d35 1
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d47 1
d49 1
d52 2
d55 2
d58 2
d62 1
d64 60
d127 4
d132 1
a132 2
share/nab/dgdb/arna.basepair.db
share/nab/dgdb/trna.basepair.db
a133 4
share/nab/dgdb/adna.nucleotide.db
share/nab/dgdb/adna.basepair.db
share/nab/dgdb/adna.stack.db
share/nab/dgdb/zdna.basepair.db
d135 52
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share/nab/dgdb/trna.nucleotide.db
share/nab/dgdb/dna.basepair.db
share/nab/dgdb/arna.nucleotide.db
share/nab/dgdb/rna.basepair.db
share/nab/dgdb/arna.stack.db
d191 6
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share/nab/reslib/bounds.db
d201 2
a202 2
share/nab/reslib/arna.std/arna.std.bnd
share/nab/reslib/arna.std/arna.std.pdb
a203 15
share/nab/reslib/axes/Axes.bnd
share/nab/reslib/axes/XYZ.axes
share/nab/reslib/rna.amber94/rna.amber94.3.bnd
share/nab/reslib/rna.amber94/rna.amber94.3.pdb
share/nab/reslib/rna.amber94/rna.amber94.5.qr
share/nab/reslib/rna.amber94/rna.amber94.5.bnd
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share/nab/reslib/rna.amber94/rna.amber94.bnd
share/nab/reslib/rna.amber94/rna.amber94.chi
share/nab/reslib/rna.amber94/rna.amber94.pdb
share/nab/reslib/rna.amber94/rna.amber94.3.qr
share/nab/reslib/rna.amber94/rna.amber94_nmr.3.qr
share/nab/reslib/rna.amber94/rna.amber94_nmr.qr
share/nab/reslib/rna.amber94/rna.amber94_nmr.5.qr
d205 13
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share/nab/reslib/protein.amber94/protein.amber94.C.bnd
share/nab/reslib/protein.amber94/protein.amber94.C.pdb
share/nab/reslib/protein.amber94/protein.amber94.C.qr
share/nab/reslib/protein.amber94/protein.amber94.N.bnd
share/nab/reslib/protein.amber94/protein.amber94.N.pdb
share/nab/reslib/protein.amber94/protein.amber94.N.qr
share/nab/reslib/protein.amber94/protein.amber94.NC.chi
share/nab/reslib/protein.amber94/protein.amber94.bnd
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share/nab/reslib/protein.amber94/protein.amber94.pdb
share/nab/reslib/protein.amber94/protein.amber94.qr
share/nab/reslib/protein.amber94/protein.amber94_nmr.qr
share/nab/reslib/bdna.std.rlb
share/nab/reslib/dna.amber94_nmr.5.rlb
d220 3
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share/nab/reslib/dna.amber94/dna.amber94.3.qr
a224 7
share/nab/reslib/dna.amber94/dna.amber94.5.qr
share/nab/reslib/dna.amber94/dna.amber94.bnd
share/nab/reslib/dna.amber94/dna.amber94.chi
share/nab/reslib/dna.amber94/dna.amber94.pdb
share/nab/reslib/dna.amber94/dna.amber94.qr
share/nab/reslib/dna.amber94/dna.amber94_nmr.3.qr
share/nab/reslib/dna.amber94/dna.amber94_nmr.5.qr
d226 1
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share/nab/reslib/dna.amber94/ade.pdb
share/nab/reslib/dna.amber94/dna.amber94.35.chi
share/nab/reslib/adna.std/adna.std.bnd
share/nab/reslib/adna.std/adna.std.pdb
share/nab/reslib/dna.amber94.3.rlb
share/nab/reslib/dna.amber94.5.rlb
share/nab/reslib/dna.amber94_nmr.rlb
share/nab/reslib/dna.amber94.rlb
share/nab/reslib/dna.amber94_nmr.3.rlb
share/nab/reslib/rna.amber94.rlb
share/nab/reslib/leap/all_amino94.lib
share/nab/reslib/leap/all_aminoct94.lib
share/nab/reslib/leap/all_aminont94.lib
share/nab/reslib/leap/all_nucleic94.lib
share/nab/reslib/leap/ions94.lib
share/nab/reslib/leap/leaprc.std
share/nab/reslib/leap/parm91X.dat
share/nab/reslib/leap/parm94.dat
share/nab/reslib/leap/leaprc.nmr
share/nab/reslib/leap/na.amberua.prepin
share/nab/reslib/leap/ions91.lib
share/nab/reslib/leap/water.lib
share/nab/reslib/leap/protein.opls.lib
share/nab/reslib/leap/opls_parm.dat
share/nab/reslib/leap/leaprc.dna.amberua
share/nab/reslib/leap/rna.amberua.lib
share/nab/reslib/leap/dna.amberua.lib
share/nab/reslib/leap/parm91X.ua.dat
share/nab/reslib/leap/pro-dna91.nmr.db4
share/nab/reslib/leap/Notes
share/nab/reslib/leap/0README
share/nab/reslib/leap/parm91.lib
share/nab/reslib/leap/pro-dna91.nmr.lib
share/nab/reslib/leap/protein.amberua.C.prepin
share/nab/reslib/leap/protein.amberua.N.prepin
share/nab/reslib/leap/protein.amberua.prepin
share/nab/reslib/leap/pro-dna91.nmr.prepin
share/nab/reslib/leap/leaprc.rna.amberua
share/nab/reslib/leap/dna.amberua.redch.lib
share/nab/reslib/leap/leaprc.dna.amberua.redch
share/nab/reslib/leap/leaprc.rna
share/nab/reslib/leap/protein.amberua.lib
share/nab/reslib/leap/leaprc.protein.amberua
share/nab/reslib/leap/leap.log
share/nab/reslib/leap/all_amino91.lib
share/nab/reslib/leap/all_aminoct91.lib
share/nab/reslib/leap/all_aminont91.lib
share/nab/reslib/leap/all_nucleic91.lib
d228 24
a251 8
share/nab/reslib/protein.amber94.N.rlb
share/nab/reslib/protein.amber94.rlb
share/nab/reslib/protein.opls.rlb
share/nab/reslib/axes.rlb
share/nab/reslib/hetatm.amber94/hetatm.amber94.qr
share/nab/reslib/hetatm.amber94/hetatm.amber94.pdb
share/nab/reslib/hetatm.amber94/hetatm.amber94.chi
share/nab/reslib/hetatm.amber94/hetatm.amber94.bnd
d253 3
a255 1
share/nab/reslib/dna.amberua/dna.amberua.pdb
d257 2
d261 15
a275 17
share/nab/reslib/dna.amberua/dna.amberua.3.qr
share/nab/reslib/dna.amberua/dna.amberua.3.bnd
share/nab/reslib/dna.amberua/dna.amberua.3.pdb
share/nab/reslib/dna.amberua/dna.amberua.chi
share/nab/reslib/dna.amberua/dna.amberua.5.qr
share/nab/reslib/hetatm.amber94.rlb
share/nab/reslib/dna.amberua.rlb
share/nab/reslib/rna.amberua/rna.amberua.3.bnd
share/nab/reslib/rna.amberua/rna.amberua.3.pdb
share/nab/reslib/rna.amberua/rna.amberua.5.qr
share/nab/reslib/rna.amberua/rna.amberua.5.bnd
share/nab/reslib/rna.amberua/rna.amberua.5.pdb
share/nab/reslib/rna.amberua/rna.amberua.qr
share/nab/reslib/rna.amberua/rna.amberua.bnd
share/nab/reslib/rna.amberua/rna.amberua.pdb
share/nab/reslib/rna.amberua/rna.amberua.chi
share/nab/reslib/rna.amberua/rna.amberua.3.qr
d278 6
a283 2
share/nab/reslib/pro-dna.nmr/pro-dna.nmr.star
share/nab/reslib/dna.amberua.5.rlb
a284 1
share/nab/reslib/rna.amberua.rlb
d286 10
d298 7
a304 57
share/nab/reslib/rna.amber94.3.rlb
share/nab/reslib/rna.amber94_nmr.3.rlb
share/nab/reslib/ala.off
share/nab/reslib/rna.amber94_nmr.5.rlb
share/nab/reslib/rna.amber94_nmr.rlb
share/nab/reslib/protein.amber94_nmr.rlb
share/nab/reslib/leap.log
share/nab/reslib/off2star
share/nab/reslib/pep1.off
share/nab/reslib/cdd.mol2
share/nab/reslib/syblCDD.lib
share/nab/reslib/parm94.star
share/nab/reslib/charlie.star.note
share/nab/reslib/conf.lib
share/nab/reslib/dna3/dna3.qr
share/nab/reslib/dna3/dna3.bnd
share/nab/reslib/dna3/dna3.chi
share/nab/reslib/dna3/dna3.pdb
share/nab/reslib/dna3.rlb
share/nab/test/duplex.in
share/nab/test/5pti.obs
share/nab/test/5pti.pdb
share/nab/test/prmtop
share/nab/test/2.pdb
share/nab/test/d01.lin.check
share/nab/test/ltest.nab
share/nab/test/d01.pdb.check
share/nab/test/dna.circle.nab
share/nab/test/duplex.nab
share/nab/test/hash.in
share/nab/test/hash.nab
share/nab/test/hash.out.check
share/nab/test/ltest.out.check
share/nab/test/get_pep_info.nab
share/nab/test/get_ring_info.nab
share/nab/test/get_sugar_info.nab
share/nab/test/getresid_from_pdb.nab
share/nab/test/ico.sym
share/nab/test/read_obs_shifts.nab
share/nab/test/sbcoil.nab
share/nab/test/shifts.nab
share/nab/test/swap_shifts.nab
share/nab/test/write_sander_inp.nab
share/nab/test/shifts.h
share/nab/test/reflexive.nab
share/nab/test/reflexive.out
share/nab/test/dg_gyrate.nab
share/nab/test/5pti.shifts.check
share/nab/test/ico.sym.out.check
share/nab/test/tbv.com.pdb
share/nab/test/dg_gyrate.out.check
share/nab/test/tbv.60.com.pdb.check
share/nab/test/gbrna.prmtop
share/nab/test/gbrna.out.check
share/nab/test/gbrna.pdb
share/nab/test/gbrna.nab
share/nab/test/pointplane.nab
d306 20
a325 1
@@dirrm share/nab/reslib/pro-dna.nmr
d327 2
d330 1
a330 2
@@dirrm share/nab/reslib/arna.std
@@dirrm share/nab/reslib/axes
d332 2
d335 1
a335 7
@@dirrm share/nab/reslib/dna.amber94
@@dirrm share/nab/reslib/adna.std
@@dirrm share/nab/reslib/hetatm.amber94
@@dirrm share/nab/reslib/dna.amberua
@@dirrm share/nab/reslib/rna.amberua
@@dirrm share/nab/reslib/dna3
@@dirrm share/nab/reslib/leap
d337 1
a337 5
@@dirrm share/nab/test
@@dirrm share/nab/examples
@@dirrm share/nab/lib
@@dirrm share/nab/include
@@dirrm share/nab/dgdb
a338 1
@@dirrm share/doc/nab
@

