head	1.32;
access;
symbols
	RELEASE_8_3_0:1.29
	RELEASE_9_0_0:1.29
	RELEASE_7_4_0:1.28
	RELEASE_8_2_0:1.28
	RELEASE_6_EOL:1.28
	RELEASE_8_1_0:1.28
	RELEASE_7_3_0:1.28
	RELEASE_8_0_0:1.27
	RELEASE_7_2_0:1.27
	RELEASE_7_1_0:1.26
	RELEASE_6_4_0:1.26
	RELEASE_5_EOL:1.26
	RELEASE_7_0_0:1.25
	RELEASE_6_3_0:1.25
	PRE_XORG_7:1.24
	RELEASE_4_EOL:1.24
	RELEASE_6_2_0:1.23
	RELEASE_6_1_0:1.22
	RELEASE_5_5_0:1.22
	RELEASE_6_0_0:1.19
	RELEASE_5_4_0:1.19
	RELEASE_4_11_0:1.17
	RELEASE_5_3_0:1.16
	RELEASE_4_10_0:1.16
	RELEASE_5_2_1:1.16
	RELEASE_5_2_0:1.16
	RELEASE_4_9_0:1.15
	RELEASE_5_1_0:1.15
	RELEASE_4_8_0:1.14
	RELEASE_5_0_0:1.13
	RELEASE_4_7_0:1.13
	RELEASE_4_6_2:1.10
	RELEASE_4_6_1:1.10
	RELEASE_4_6_0:1.10
	RELEASE_5_0_DP1:1.10
	RELEASE_4_5_0:1.9
	RELEASE_4_4_0:1.8
	RELEASE_4_3_0:1.5
	RELEASE_4_2_0:1.5;
locks; strict;
comment	@# @;


1.32
date	2013.03.14.12.55.40;	author svnexp;	state Exp;
branches;
next	1.31;

1.31
date	2012.11.17.05.54.52;	author svnexp;	state Exp;
branches;
next	1.30;

1.30
date	2012.10.01.14.45.16;	author tabthorpe;	state Exp;
branches;
next	1.29;

1.29
date	2011.05.02.12.41.43;	author makc;	state Exp;
branches;
next	1.28;

1.28
date	2010.01.31.03.42.20;	author pgollucci;	state Exp;
branches;
next	1.27;

1.27
date	2009.03.28.16.59.39;	author miwi;	state Exp;
branches;
next	1.26;

1.26
date	2008.04.19.17.46.46;	author miwi;	state Exp;
branches;
next	1.25;

1.25
date	2007.05.19.20.00.24;	author flz;	state Exp;
branches;
next	1.24;

1.24
date	2006.12.09.07.48.18;	author rafan;	state Exp;
branches;
next	1.23;

1.23
date	2006.06.06.12.05.19;	author itetcu;	state Exp;
branches;
next	1.22;

1.22
date	2006.01.14.19.34.43;	author pav;	state Exp;
branches;
next	1.21;

1.21
date	2005.10.11.22.33.34;	author sem;	state Exp;
branches;
next	1.20;

1.20
date	2005.09.14.09.24.04;	author vs;	state Exp;
branches;
next	1.19;

1.19
date	2005.03.20.11.47.59;	author pav;	state Exp;
branches;
next	1.18;

1.18
date	2005.03.19.21.32.13;	author pav;	state Exp;
branches;
next	1.17;

1.17
date	2004.11.01.22.21.01;	author pav;	state Exp;
branches;
next	1.16;

1.16
date	2003.11.13.14.44.58;	author trevor;	state Exp;
branches;
next	1.15;

1.15
date	2003.05.05.12.24.07;	author arved;	state Exp;
branches;
next	1.14;

1.14
date	2003.02.21.11.01.35;	author knu;	state Exp;
branches;
next	1.13;

1.13
date	2002.09.21.14.56.18;	author ijliao;	state Exp;
branches;
next	1.12;

1.12
date	2002.09.21.06.59.27;	author ijliao;	state Exp;
branches;
next	1.11;

1.11
date	2002.06.08.00.40.10;	author petef;	state Exp;
branches;
next	1.10;

1.10
date	2002.02.22.07.57.05;	author pat;	state Exp;
branches;
next	1.9;

1.9
date	2001.09.19.13.03.17;	author wjv;	state Exp;
branches;
next	1.8;

1.8
date	2001.08.06.10.50.02;	author wjv;	state Exp;
branches;
next	1.7;

1.7
date	2001.07.10.16.35.08;	author fenner;	state Exp;
branches;
next	1.6;

1.6
date	2001.06.20.14.25.52;	author wjv;	state Exp;
branches;
next	1.5;

1.5
date	2000.11.15.00.54.09;	author jeh;	state Exp;
branches;
next	1.4;

1.4
date	2000.11.07.23.27.55;	author asami;	state Exp;
branches;
next	1.3;

1.3
date	2000.11.03.13.23.15;	author jeh;	state Exp;
branches;
next	1.2;

1.2
date	2000.11.02.11.25.41;	author jeh;	state Exp;
branches;
next	1.1;

1.1
date	2000.10.29.13.56.23;	author jeh;	state Exp;
branches;
next	;


desc
@@


1.32
log
@## SVN ## Exported commit - http://svnweb.freebsd.org/changeset/base/314129
## SVN ## CVS IS DEPRECATED: http://wiki.freebsd.org/CvsIsDeprecated
@
text
@# Created by: tonym
# $FreeBSD: head/biology/ncbi-toolkit/Makefile 314129 2013-03-14 05:27:58Z miwi $

PORTNAME=	ncbi-toolkit
PORTVERSION=	2012.06.20	# containing BLAST v2.2.27
CATEGORIES=	biology
MASTER_SITES=	ftp://ftp.ncbi.nlm.nih.gov/toolbox/ncbi_tools/old/${PORTVERSION:S/.//g}/
DISTNAME=	ncbi
DIST_SUBDIR=	${PORTNAME}-${PORTVERSION}

MAINTAINER=	ports@@FreeBSD.org
COMMENT=	NCBI development toolkit, including BLAST 2 and GenBank/Entrez support

OPTIONS_DEFINE=	DOCS

USE_MOTIF=	yes
MAKE_JOBS_UNSAFE=	yes

SUB_FILES=	pkg-message

# These are the executables we install.
#
# We follow Debian in the separation of the port in three
# main categories and in the selection of programs that
# are installed in each case. This Makes Sense (TM).
# Thus, we drop a handful of programs that are useful only as tests
# or code examples
# (credit goes to Aaron Ucko, the Debian maintainer of the NCBI stuff)
# Right now the port installs all the executables below, this may
# change in the future with the addition of selectable knobs or
# new slave ports

TOOLKIT_EXE=	asn2ff asn2gb asn2idx asn2xml asndhuff asntool cdscan \
		checksub debruijn demo_regexp demo_regexp_grep dosimple \
		entrcmd errhdr fa2htgs findspl gene2xml getmesh getpub \
		gil2bin idfetch indexpub makeset ncbisort seqtest tbl2asn \
		vecscreen
BLAST_EXE=	bl2seq blastall blastcl3 blastclust blastpgp copymat \
		fastacmd formatdb formatrpsdb impala makemat megablast \
		rpsblast seedtop taxblast
X11_EXE=	Nentrez Psequin ddv entrez2 sbtedit udv

# and these are the man pages we have
MAN1=		Psequin.1 asn2ff.1 asn2idx.1 asn2xml.1 asndhuff.1 \
		asntool.1 blast.1 blastclust.1 cdscan.1 checksub.1 \
		copymat.1 ddv.1 debruijn.1 entrez2.1 errhdr.1 fa2htgs.1 \
		fastacmd.1 findspl.1 formatdb.1 formatrpsdb.1 getmesh.1 \
		getpub.1 gil2bin.1 idfetch.1 indexpub.1 makemat.1 \
		taxblast.1 tbl2asn.1 udv.1 vecscreen.1

MLINKS=		blast.1 bl2seq.1 blast.1 blastall.1 blast.1 blastcl3.1 \
		blast.1 blastpgp.1 blast.1 impala.1 blast.1 megablast.1 \
		blast.1 seedtop.1 blast.1 rpsblast.1 

.include <bsd.port.options.mk>

post-patch:
	@@${REINPLACE_CMD} -e \
		's|/usr/X11R6|${LOCALBASE}|g' ${WRKSRC}/make/makedis.csh
	@@${REINPLACE_CMD} -e \
		'/^NCBI_CC/s|=.*|= ${CC}| ; \
		 /^NCBI_LDFLGS1/s|=.*|= ${LDFLAGS}| ; \
		 /^NCBI_OPTFLAG/s|= .*|= ${CFLAGS}| ; \
		 s|-I/usr/X11R6/include||g ; \
		 s|-L/usr/X11R6/lib||g ; \
		 s|/usr/local|${LOCALBASE}|g ; \
		 s|-Wl,-Bstatic|| ; \
		 s|-Wl,-Bdynamic||' ${WRKSRC}/platform/freebsd.ncbi.mk

# the ncbi-toolkit provides a shell script to drive the build
# and we use it

do-build:
	cd ${WRKDIR}; ./${DISTNAME}/make/makedis.csh

# the ncbi-toolkit does not provide an install target
# we thus roll our own

do-install:
.for blastexe in ${BLAST_EXE}
	(cd ${WRKSRC}/bin && ${INSTALL_PROGRAM} ${blastexe} ${PREFIX}/bin)
.endfor
.for toolkitexe in ${TOOLKIT_EXE}
	(cd ${WRKSRC}/bin && ${INSTALL_PROGRAM} ${toolkitexe} ${PREFIX}/bin)
.endfor
.for x11exe in ${X11_EXE}
	(cd ${WRKSRC}/bin && ${INSTALL_PROGRAM} ${x11exe} ${PREFIX}/bin)
.endfor
	@@${MKDIR} ${PREFIX}/lib/${DISTNAME}
	(cd ${WRKSRC}/lib && ${INSTALL_DATA} *.a ${PREFIX}/lib/${DISTNAME})
	@@${MKDIR} ${PREFIX}/include/${DISTNAME}
	(cd ${WRKSRC}/include && ${INSTALL_DATA} *.h \
		${PREFIX}/include/${DISTNAME})
	@@${MKDIR} ${PREFIX}/include/${DISTNAME}/connect
	(cd ${WRKSRC}/include/connect && ${INSTALL_DATA} *.h \
		${PREFIX}/include/${DISTNAME}/connect)
.for man in ${MAN1}
	(cd ${WRKSRC}/doc/man && ${INSTALL_MAN} ${man} ${MANPREFIX}/man/man1)
.endfor
	@@${MKDIR} ${DATADIR}
	(cd ${WRKSRC}/data && ${INSTALL_DATA} * ${DATADIR})
.if ${PORT_OPTIONS:MDOCS}
	@@${MKDIR} ${DOCSDIR}
	@@(cd ${WRKSRC}/doc && ${TAR} --exclude man -cf - .) | \
		(cd ${DOCSDIR} && ${TAR} --unlink -xf -)
	@@${FIND} ${DOCSDIR} | ${XARGS} ${CHOWN} ${SHAREOWN}:${SHAREGRP}
	@@${FIND} ${DOCSDIR} -type d | ${XARGS} ${CHMOD} a+rx
	@@${FIND} ${DOCSDIR} -type f | ${XARGS} ${CHMOD} ${SHAREMODE}
.endif
	@@${CAT} ${PKGMESSAGE}

.include <bsd.port.mk>
@


1.31
log
@Switch exporter over
@
text
@d2 1
a2 1
# $FreeBSD: head/biology/ncbi-toolkit/Makefile 305130 2012-10-01 14:45:16Z tabthorpe $
d5 1
a5 2
PORTVERSION=	2009.03.01	# containing BLAST v2.2.19
PORTREVISION=	1
d7 1
a7 1
MASTER_SITES=	ftp://ftp.ncbi.nih.gov/toolbox/ncbi_tools/old/${PORTVERSION:S/.//g}/
d14 2
d17 2
a18 1
CPIO_ARGS=	--quiet -pdum -R
d33 5
a37 4
TOOLKIT_EXE=	asn2ff asn2gb asn2idx asn2xml asndhuff asntool checksub \
		debruijn entrcmd fa2htgs findspl getmesh getpub gil2bin \
		idfetch indexpub makeset tbl2asn vecscreen demo_regexp \
		demo_regexp_grep errhdr gene2xml ncbisort seqtest test_regexp
d44 12
a55 11
MAN1=	Psequin.1 asn2all.1 asn2asn.1 asn2ff.1 asn2fsa.1 asn2gb.1 asn2idx.1 \
	asn2xml.1 asndhuff.1 asntool.1 asnval.1 blast.1 blastclust.1 \
	cdscan.1 checksub.1 copymat.1 ddv.1 \
	debruijn.1 entrez2.1 errhdr.1 fa2htgs.1 fastacmd.1 findspl.1 \
	fmerge.1 formatdb.1 formatrpsdb.1 getmesh.1 getpub.1 gil2bin.1 \
	idfetch.1 indexpub.1 makemat.1 makeset.1 rpsblast.1 sbtedit.1 \
	tbl2asn.1 udv.1 vecscreen.1

MLINKS=	blast.1 bl2seq.1 blast.1 blastall.1 blast.1 blastcl3.1 \
	blast.1 blastpgp.1 blast.1 impala.1 blast.1 megablast.1 \
	blast.1 seedtop.1 blast.1 rpsblast.1
d58 11
a68 3
	@@${REINPLACE_CMD} -e 's,/usr/X11R6,${LOCALBASE},g' \
		${WRKSRC}/make/makedis.csh \
		${WRKSRC}/platform/freebsd.ncbi.mk
a82 1

a85 1

a88 1

d91 3
d95 2
a96 3
	(cd ${WRKSRC}/include && ${INSTALL_DATA} *.h ${PREFIX}/include/${DISTNAME})
	(cd ${WRKSRC}/include/connect && ${INSTALL_DATA} *.h ${PREFIX}/include/${DISTNAME}/connect)

d98 1
a98 1
	(cd ${WRKSRC}/doc/man && ${INSTALL_MAN} ${man} ${PREFIX}/man/man1)
a99 2

post-install:
d101 2
a102 3
	(cd ${WRKSRC}/data/ && ${INSTALL_DATA} * ${DATADIR})

.if !defined(NOPORTDOCS)
d104 5
a108 5
	(cd ${WRKSRC}/doc && ${FIND} * | ${CPIO} ${CPIO_ARGS} ${SHAREOWN}:${SHAREGRP} ${DOCSDIR})
.endif

.if !defined(BATCH)
	@@ ${CAT} ${PKGMESSAGE}
d110 1
@


1.30
log
@SVN rev 305130 on 2012-10-01 14:45:16Z by tabthorpe

- Reassign to the heap at maintainer's request
@
text
@d2 1
a2 1
# $FreeBSD$
@


1.29
log
@Fix build with open-motif-2.3.3

PR:		ports/154044
Submitted by:	Mikhail Tsatsenko <m.tsatsenko at gmail.com>
Exp-runs by:	pav
@
text
@d1 1
a1 5
# ex:ts=8
# New ports collection makefile for:	NCBI
# Date created:         03 April 2000
# Whom:                 tonym
#
a2 1
#
d12 1
a12 1
MAINTAINER=	fernan@@iib.unsam.edu.ar
@


1.28
log
@- use $SUB_FILES to dynamically adjust pkg-message

PR:             ports/142408
Submitted by:   Sevan Janiyan <venture37@@geeklan.co.uk>
Approved by:    fernan@@iib.unsam.edu.ar (maintainer)
@
text
@d11 1
a45 7
MAN1=	asn2asn.1 asn2ff.1 asn2fsa.1 asn2gb.1 asn2idx.1	asn2xml.1 \
	asndhuff.1 asnval.1 blast.1 blastclust.1 cdscan.1 checksub.1 \
	copymat.1 ddv.1 debruijn.1 errhdr.1 fa2htgs.1 fastacmd.1 \
	findspl.1 fmerge.1 formatdb.1 getmesh.1 getpub.1 gil2bin.1 \
	idfetch.1 indexpub.1 makemat.1 makeset.1 sbtedit.1 tbl2asn.1 \
	udv.1 vecscreen.1 Psequin.1 asn2all.1 asntool.1 entrez2.1 \
	formatrpsdb.1
@


1.27
log
@- Update to 2009.03.01

PR:		133099
Submitted by:	Fernan Aguero <fernan.aguero@@gmail.com>
Approved by:	maintainer
@
text
@d21 1
a21 1
PKGMESSAGE=	${WRKDIR}/pkg-message
a110 1
	@@ ${SED} -e "s#%%PREFIX%%#${PREFIX}#" ${FILESDIR}/pkg-message.in > ${PKGMESSAGE}
@


1.26
log
@- Remove unneeded dependency from gtk12/gtk20 [1]
- Remove USE_XLIB/USE_X_PREFIX/USE_XPM in favor of USE_XORG
- Remove X11BASE support in favor of LOCALBASE or PREFIX
- Use USE_LDCONFIG instead of INSTALLS_SHLIB
- Remove unneeded USE_GCC 3.4+

Thanks to all Helpers:
	Dmitry Marakasov, Chess Griffin, beech@@, dinoex, rafan, gahr,
	ehaupt, nox, itetcu, flz, pav

PR:		116263
Tested on:	pointyhat
Approved by:	portmgr (pav)
@
text
@d10 1
a10 2
PORTVERSION=	2006.05.07	# containing BLAST v2.2.14
PORTREVISION=	1
d36 7
a42 5
		debruijn entrcmd fa2htgs findspl getseq getfeat getmesh \
		getpub gil2bin idfetch indexpub makeset tbl2asn vecscreen
BLAST_EXE=	bl2seq blast blastall blastcl3 blastclust blastpgp copymat \
		fastacmd formatdb impala makemat megablast rpsblast seedtop
X11_EXE=	Nentrez Psequin ddv entrez2 netentcf sbtedit udv
d45 13
a57 5
MAN1=	Nentrez.1 Psequin.1 asn2asn.1 asn2ff.1 asn2gb.1 asn2xml.1 asndhuff.1 \
	asntool.1 blast.1 blastclust.1 cdscan.1 checksub.1 copymat.1 ddv.1 \
	debruijn.1 entrcmd.1 entrez2.1 errhdr.1 fa2htgs.1 fastacmd.1 findspl.1 \
	fmerge.1 formatdb.1 gbseqget.1 getfeat.1 getmesh.1 getpub.1 gil2bin.1 \
	idfetch.1 indexpub.1 makemat.1 makeset.1 netentcf.1 rpsblast.1 \
d62 1
a62 1
	blast.1 seedtop.1
@


1.25
log
@- Welcome X.org 7.2 \o/.
- Set X11BASE to ${LOCALBASE} for recent ${OSVERSION}.
- Bump PORTREVISION for ports intalling files in ${X11BASE}.
@
text
@d56 1
a56 1
	@@${REINPLACE_CMD} -e 's,/usr/X11R6,${X11BASE},g' \
@


1.24
log
@- Respect X11BASE

Approved by:	portmgr (linimon)
@
text
@d11 1
@


1.23
log
@Update biology/ncbi-toolkit to the latest release.
Quoting from www.ncbi.nlm.nih.gov/blast/blast_whatsnew.shtml
Major changes include:
 blastall now uses the new engine by default, resulting
 in significant performance improvements and enabling
 query concatenation for all program types.

PR:		ports/98570
Submitted by:	maintainer
Approved by:	lawrance (mentor, implict)
@
text
@d54 5
@


1.22
log
@- Update to 2005.12.06

PR:		ports/91714
Submitted by:	Fernan Aguero <fernan@@iib.unsam.edu.ar> (maintainer)
@
text
@d10 1
a10 1
PORTVERSION=	2005.12.06
@


1.21
log
@- Update to 20050605

PR:		ports/87266
Submitted by:	maintainer
@
text
@d10 1
a10 1
PORTVERSION=	2005.06.05
d35 2
a36 2
TOOLKIT_EXE=	asn2ff asn2gb asn2xml asndhuff checksub debruijn \
		entrcmd fa2htgs findspl getseq getfeat getmesh \
d40 1
a40 1
X11_EXE=	Nentrez Psequin ddv entrez2 netentcf udv
d96 1
a96 1
	@@ ${SED} -e "s#%%PREFIX%%#${PREFIX}#" ${.CURDIR}/pkg-message > ${PKGMESSAGE}
@


1.20
log
@Don't strip static libraries on installation ;)
(Unbreaks e.g. biology/nclever)
@
text
@d10 1
a10 2
PORTVERSION=	2004.10.20
PORTREVISION=	1
d30 1
a30 1
# (credit goes to Aaron Ucko, the Debian maintainer of the NCBI stuff!)
d43 10
a52 10
MAN1=		Nentrez.1 Psequin.1 asn2asn.1 asn2ff.1 asn2gb.1 asn2xml.1 asndhuff.1 \
		asntool.1 blast.1 blastclust.1 cdscan.1 checksub.1 copymat.1 ddv.1 \
		debruijn.1 entrcmd.1 entrez2.1 errhdr.1 fa2htgs.1 fastacmd.1 findspl.1 \
		fmerge.1 formatdb.1 gbseqget.1 getfeat.1 getmesh.1 getpub.1 gil2bin.1 \
		idfetch.1 indexpub.1 makemat.1 makeset.1 netentcf.1 rpsblast.1 \
		tbl2asn.1 udv.1 vecscreen.1

MLINKS=		blast.1 bl2seq.1 blast.1 blastall.1 blast.1 blastcl3.1 \
		blast.1 blastpgp.1 blast.1 impala.1 blast.1 megablast.1 \
		blast.1 seedtop.1
@


1.19
log
@- Fix man page damage I did last night

Submitted by:	Fernan Aguero <fernan@@iib.unsam.edu.ar> (maintainer)
@
text
@d11 1
d78 1
a78 1
	(cd ${WRKSRC}/lib && ${INSTALL_PROGRAM} *.a ${PREFIX}/lib/${DISTNAME})
@


1.18
log
@- Update to 2.2.10 from 20041020
- Transfer maintainership

PR:		ports/67735
Submitted by:	Fernan Aguero <fernan@@iib.unsam.edu.ar> (maintainer)
Approved by:	old maintainer indirectly in
http://lists.freebsd.org/pipermail/freebsd-ports-bugs/2004-June/035351.html
@
text
@a42 1

d44 9
a52 6
		asntool.1 bl2seq.1 blast.1 blastall.1 blastcl3.1 blastclust.1 \
		blastpgp.1 cdscan.1 checksub.1 copymat.1 ddv.1 debruijn.1 entrcmd.1 \
		entrez2.1 errhdr.1 fa2htgs.1 fastacmd.1 findspl.1 fmerge.1 formatdb.1 \
		gbseqget.1 getfeat.1 getmesh.1 getpub.1 gil2bin.1 idfetch.1 impala.1 \
		indexpub.1 makemat.1 makeset.1 megablast.1 netentcf.1 rpsblast.1 \
		seedtop.1 tbl2asn.1 udv.1 vecscreen.1
@


1.17
log
@- Update to 2004.06.16

Inspired by:	ports/72726
Approved by:	maintainer timeout (2 weeks)
@
text
@d1 1
d10 1
a10 1
PORTVERSION=	2004.06.16
d14 1
d16 1
a16 1
MAINTAINER=	tonym@@biolateral.com.au
d20 2
d23 1
d25 58
a82 2
# In the files directory we have:
#
d84 3
a86 3
DUMMYMAKE=	Makefile
DOCDIR=		${PREFIX}/share/doc/${PORTNAME}
CPIO=		cpio --quiet -pdum -R
d88 4
a91 9
#
# Thus ends the definitions.
#
# Now we need a dummy top level Makefile as NCBI has scripts that need to
# run from point above ncbi hierachy.
#

pre-configure:
	@@${CP} ${FILESDIR}/${DUMMYMAKE} ${WRKSRC}
d93 3
a95 9
post-install:
	${MKDIR} ${DATADIR}
	@@for file in ${WRKSRC}/data/*; do \
		${INSTALL_DATA} $$file ${DATADIR}; \
	done
.if !defined(NOPORTDOCS)
	${MKDIR} ${DOCDIR}
	cd ${WRKSRC}/doc && ${FIND} * | \
	  ${CPIO} ${SHAREOWN}:${SHAREGRP} ${DOCDIR}
a96 1
	@@${SED} -e "s#%%PREFIX%%#${PREFIX}#" ${PKGMESSAGE}
@


1.16
log
@Use the FIND and XARGS macros introduced in bsd.port.mk 1.391.
@
text
@d9 1
a9 1
PORTVERSION=	2003.04.21
d38 1
a38 1
	@@${MKDIR} ${DATADIR}
d43 2
a44 2
	@@${MKDIR} ${DOCDIR}
	@@cd ${WRKSRC}/doc && ${FIND} * | \
@


1.15
log
@Update to 2003.04.21

PR:		51709
Submitted by:	Tony Maher <tonymaher@@optushome.com.au>
@
text
@d44 1
a44 1
	@@cd ${WRKSRC}/doc && find * | \
@


1.14
log
@De-pkg-comment.
@
text
@d9 1
a9 1
PORTVERSION=	2002.04.26
a17 1
USE_REINPLACE=	yes
a23 3
PLATFORMDIR=	${WRKSRC}/platform
BUILDSCRIPT=	${WRKSRC}/make/makedis.csh

a35 2
	@@${CP} ${FILESDIR}/freebsd.ncbi.mk ${PLATFORMDIR}
	@@${REINPLACE_CMD} -e 's#NetBSD#FreeBSD#;'  -e 's#netbsd#freebsd#' ${BUILDSCRIPT}
@


1.13
log
@add forgotten "USE_REINPLACE=yes"

Submitted by:	maintainer
@
text
@d15 1
@


1.12
log
@upgrade to 20020426

PR:		39357
Submitted by:	maintainer
@
text
@d17 1
@


1.11
log
@Correct MASTER_SITES.

PR:		39016
Submitted by:	maintainer
@
text
@d9 1
a9 1
PORTVERSION=	2001.12.20
d39 1
a39 1
	@@${PERL} -pi.orig -e 's#NetBSD#FreeBSD#;'  -e 's#netbsd#freebsd#' ${BUILDSCRIPT}
@


1.10
log
@Update to 2001.12.20

PR:		35203
Submitted by:	maintainer
@
text
@d11 1
a11 1
MASTER_SITES=	ftp://ftp.ncbi.nlm.nih.gov/toolbox/ncbi_tools/old/${PORTVERSION:S/.//g}/
@


1.9
log
@- Add installation of include files
- Bump PORTREVISION

PR:		30660
Submitted by:	Tony Maher <tonym@@biolateral.com.au> (MAINTAINER)
@
text
@d5 1
a5 1
# $FreeBSD: ports/biology/ncbi-toolkit/Makefile,v 1.8 2001/08/06 10:50:02 wjv Exp $
d9 1
a9 2
PORTVERSION=	2001.04.03
PORTREVISION=	1
a22 5

#
#	out of it for the post-install when we put in system startup file.
#

d30 1
a30 3
# Thus ends the definitions
#

d32 1
a32 1
# We need a dummy top level Makefile as NCBI has scripts that need to
d42 4
d47 2
a48 2
	@@ ${MKDIR} ${DOCDIR}
	@@ cd ${WRKSRC}/doc && find * | \
d51 1
@


1.8
log
@Update maintainer's email address.

Approved by:	MAINTAINER
@
text
@d5 1
a5 1
# $FreeBSD: ports/biology/ncbi-toolkit/Makefile,v 1.7 2001/07/10 16:35:08 fenner Exp $
d10 1
@


1.7
log
@Update Tony Maher's email address.
@
text
@d5 1
a5 1
# $FreeBSD: ports/biology/ncbi-toolkit/Makefile,v 1.6 2001/06/20 14:25:52 wjv Exp $
d14 1
a14 1
MAINTAINER=	tonym@@angis.org.au
@


1.6
log
@Update to version 2001.04.03; add installation of some documentation.

Approved by:	MAINTAINER
@
text
@d5 1
a5 1
# $FreeBSD: ports/biology/ncbi-toolkit/Makefile,v 1.5 2000/11/15 00:54:09 jeh Exp $
d14 1
a14 1
MAINTAINER=	tony.maher@@ebioinformatics.com
@


1.5
log
@They made changes to the "blast" program.

Submitted by:	MAINTAINER
@
text
@d5 1
a5 1
# $FreeBSD: ports/biology/ncbi-toolkit/Makefile,v 1.4 2000/11/07 23:27:55 asami Exp $
d9 1
a9 2
PORTVERSION=	2000.10.31
PORTREVISION=	1
a12 1
DIST_SUBDIR=	ncbi
d31 3
d47 7
@


1.4
log
@Change motif to a normal dependency.  REQUIRES_MOTIF is now called
USE_MOTIF and generates a LIB_DEPENDS to x11-toolkits/open-motif.  As
before, it implies USE_XPM (and therefore USE_XLIB).  Motif-dummy is
removed from PKG_IGNORE_DEPENDS, whose sole resident is now XFree86-3.

Most of the simple ".if defined(HAVE_MOTIF)"s are removed to always
have USE_MOTIF.  ftp/moxftp will define USE_MOTIF unless
WANT_ATHENA_VERSION (new variable) is defined.  I merged the X cases
in cad/mars, so USE_MOTIF is used iff WITHOUT_X11 is not defined.

I will remove x11-toolkits/Motif-dummy (which has been repo copied to
open-motif) in a few days.
@
text
@d5 1
a5 1
# $FreeBSD: ports/biology/ncbi-toolkit/Makefile,v 1.3 2000/11/03 13:23:15 jeh Exp $
d8 1
a8 1
PORTNAME=	ncbi.toolkit
d10 1
@


1.3
log
@Yes.  They did re-roll this version, it is legit.
They donot version the dist, but store them in versioned dir.  Update
 Makefile to handle that.
Update CHECKSUM

Submitted by:	bento
@
text
@d5 1
a5 1
# $FreeBSD: ports/biology/ncbi-toolkit/Makefile,v 1.2 2000/11/02 11:25:41 jeh Exp $
d17 1
a17 1
REQUIRES_MOTIF=	yes
@


1.2
log
@Updated to new version.  That is the pits, the day after it becomes
a port they release a new version.  This is a new version, w/o a number.

PR:		22522
Submitted by:	Tony Maher <tonym@@dt.home> MAINTAINER
@
text
@d5 1
a5 1
# $FreeBSD: ports/biology/ncbi-toolkit/Makefile,v 1.1 2000/10/29 13:56:23 jeh Exp $
d11 1
a11 1
MASTER_SITES=	ftp://ftp.ncbi.nlm.nih.gov/toolbox/ncbi_tools/
@


1.1
log
@New Port: biology/ncbi-toolkit
National Center for Biotechnology Information (NCBI) Development Toolkit.

PR:		22388
Submitted by:	Tony Maher <tony.maher@@ebioinformatics.com>
@
text
@d5 1
a5 1
# $FreeBSD$
d9 1
a9 1
PORTVERSION=	2000.07.07
@

