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1.8
date	2005.03.19.21.32.13;	author pav;	state dead;
branches;
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1.7
date	2004.11.01.22.21.02;	author pav;	state Exp;
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date	2003.05.05.12.24.08;	author arved;	state Exp;
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1.5
date	2002.09.21.06.59.28;	author ijliao;	state Exp;
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desc
@@


1.8
log
@- Update to 2.2.10 from 20041020
- Transfer maintainership

PR:		ports/67735
Submitted by:	Fernan Aguero <fernan@@iib.unsam.edu.ar> (maintainer)
Approved by:	old maintainer indirectly in
http://lists.freebsd.org/pipermail/freebsd-ports-bugs/2004-June/035351.html
@
text
@--- make/makeall.unx.orig	Tue Jun  8 17:44:54 2004
+++ make/makeall.unx	Mon Nov  1 21:07:43 2004
@@@@ -944,3 +944,48 @@@@
 	#load $(LDFLAGS) getmuid.c medutil.c \
 	$(SRC11) $(SRC8) $(SRC7) $(SRC6) $(SRC5) $(SRC3) \
 	$(SRC2) $(SRC1) $(OTHERLIBS) -lsocket -lnsl
+
+EXE=	Nentrez Psequin \
+		asn2ff asn2gb asn2xml asndhuff asntool \
+		blastall blastcl3 blastclust blastpgp \
+		cdscan checksub copymat \
+		ddv demo_regexp demo_regexp_grep dosimple \
+		entrcmd entrez2 errhdr fa2htgs fastacmd findspl formatdb \
+		getfeat getmesh getpub getseq gil2bin \
+		idfetch impala indexpub \
+		makemat makeset megablast \
+		ncbisort netentcf \
+		rpsblast \
+		seedtop seqtest \
+		tbl2asn testcore testobj testval \
+		udv vecscreen
+
+
+MKDIR=	/bin/mkdir -p
+INSTALL_PROGRAM=	/usr/bin/install -c
+
+binstall: $(EXE)
+	${MKDIR} ${PREFIX}/bin
+.for f in $(EXE)
+	${INSTALL_PROGRAM} -s $(f) ${PREFIX}/bin
+.endfor
+
+linstall: $(LIB)
+	${MKDIR} ${PREFIX}/lib/ncbi
+	for file in *.a; do \
+		${INSTALL_PROGRAM} $$file ${PREFIX}/lib/ncbi; \
+	done
+
+iinstall::
+	${MKDIR} ${PREFIX}/include/ncbi/connect
+	cd ../include; \
+	for file in *.h; do \
+		${INSTALL_PROGRAM} $$file ${PREFIX}/include/ncbi; \
+	done
+	cd ../include/connect; \
+	for file in *.h; do \
+		${INSTALL_PROGRAM} $$file ${PREFIX}/include/ncbi/connect; \
+	done
+
+install: iinstall linstall binstall
+
@


1.7
log
@- Update to 2004.06.16

Inspired by:	ports/72726
Approved by:	maintainer timeout (2 weeks)
@
text
@@


1.6
log
@Update to 2003.04.21

PR:		51709
Submitted by:	Tony Maher <tonymaher@@optushome.com.au>
@
text
@d1 3
a3 3
--- make/makeall.unx.orig	Thu Mar 21 06:01:20 2002
+++ make/makeall.unx	Sat Jun  8 20:16:09 2002
@@@@ -859,3 +859,46 @@@@
d13 1
a13 1
+		entrcmd entrez2 errhdr fa2htgs fastacmd findspl fmerge formatdb \
d29 3
a31 1
+	${INSTALL_PROGRAM} -s $? /${PREFIX}/bin
@


1.5
log
@upgrade to 20020426

PR:		39357
Submitted by:	maintainer
@
text
@d9 2
a10 2
+		asn2ff asn2xml asndhuff asntool \
+		bl2seq blast.REAL blastall blastcl3 blastclust blastpgp \
d12 2
a13 2
+		ddv dosimple \
+		entrcmd errhdr fa2htgs fastacmd findspl fmerge formatdb \
@


1.4
log
@Update to 2001.12.20

PR:		35203
Submitted by:	maintainer
@
text
@d1 3
a3 3
--- make/makeall.unx.orig	Thu Apr  5 09:24:30 2001
+++ make/makeall.unx	Tue Sep 18 14:49:24 2001
@@@@ -851,3 +851,51 @@@@
d9 1
a9 1
+		asn2fast asn2ff asn2xml asndhuff asntool \
a23 7
+LIB=	libncbi.a		libncbicdr.a	libncbimla.a	libncbitxc2.a \
+		libnetentr.a	libncbiCacc.a	libncbicn3d.a	libncbimmdb.a \
+		libnetblast.a	libvibgif.a		libncbiNacc.a	libncbidesk.a \
+		libncbiobj.a	libnetcli.a		libvibnet.a		libncbiacc.a \
+		libncbiid1.a	libncbitool.a	libnetcli_.a	libvibrant.a
+
+
d33 3
a35 1
+	${INSTALL_PROGRAM} $? ${PREFIX}/lib/ncbi
@


1.3
log
@- Add installation of include files
- Bump PORTREVISION

PR:		30660
Submitted by:	Tony Maher <tonym@@biolateral.com.au> (MAINTAINER)
@
text
@d9 1
a9 1
+		asn2fast asn2ff asndhuff asntool \
@


1.2
log
@Updated to new version.  That is the pits, the day after it becomes
a port they release a new version.  This is a new version, w/o a number.

PR:		22522
Submitted by:	Tony Maher <tonym@@dt.home> MAINTAINER
@
text
@d1 3
a3 3
--- make/makeall.unx.orig	Sat Jul  8 04:16:35 2000
+++ make/makeall.unx	Tue Oct 24 22:35:34 2000
@@@@ -782,3 +782,174 @@@@
a30 126
+INC= 	actutils.h		matrix.h		rpsutil.h \
+		asnblock.h		mbalign.h		saldist.h \
+		asncode.h		mblast.h		saled.h \
+		asnent2.h		mbutils.h		saledit.h \
+		asnfdef.h		mconsist.h		salfiles.h \
+		asnfeat.h		mdrcherr.h		salign.h \
+		asngen.h		medarch.h		salmedia.h \
+		asnid0.h		medutil.h		salogif.h \
+		asnloc.h		medview.h		salpacc.h \
+		asnmdrs.h		mkbioseq.h		salpanel.h \
+		asnmedli.h		mmdb1.h			salparam.h \
+		asnmime.h		mmdb2.h			salpedit.h \
+		asnmla.h		mmdb3.h			salprop.h \
+		asnneten.h		mmdbapi.h		salpstat.h \
+		asnproj.h		mmdbapi1.h		salptool.h \
+		asnprt.h		mmdbapi2.h		salsa.h \
+		asnpub.h		mmdbapi3.h		salsap.h \
+		asnpubme.h		mmdbapi4.h		salstruc.h \
+		asnres.h		mmdbdata.h		salutil.h \
+		asnseq.h		mmdblocl.h		samutil.h \
+		asnsset.h		ncbi.h			satutil.h \
+		asnsubmt.h		ncbibs.h		sdisplay.h \
+		asntax1.h		ncbibuf.h		sec.h \
+		asntaxon.h		ncbicli.h		seed.h \
+		bandalgn.h		ncbidraw.h		seg.h \
+		binary.h		ncbienv.h		seqanal.h \
+		biosrc.h		ncbierr.h		seqcons.h \
+		blast.h			ncbifile.h		seqfltr.h \
+		blastdef.h		ncbigif.h		seqgraph.h \
+		blastkar.h		ncbilang.h		seqgrphx.h \
+		blastpat.h		ncbilcl.h		seqmgr.h \
+		blastpri.h		ncbimain.h		seqmtrx.h \
+		blocks.h		ncbimath.h		seqpcc.h \
+		blstspc.h		ncbimem.h		seqport.h \
+		bspview.h		ncbimisc.h		seqscrl.h \
+		casn.h			ncbimsg.h		seqsub.h \
+		cdconfig.h		ncbinet.h		sequtil.h \
+		cdd.h			ncbiopt.h		shim3d.h \
+		cdentrez.h		ncbiport.h		simple.h \
+		cdnewlib.h		ncbiprop.h		simutil.h \
+		cdrgn.h			ncbisam.h		spell.h \
+		cdrom.h			ncbisami.h		splutil.h \
+		cdromlib.h		ncbisgml.h		sqnutils.h \
+		cn3dentr.h		ncbisock.h		strimprt.h \
+		cn3dmain.h		ncbisort.h		stsutil.h \
+		cn3dmesh.h		ncbisrti.h		subutil.h \
+		cn3dmodl.h		ncbistd.h		suggapi.h \
+		cn3dmsel.h		ncbistr.h		suggen.h \
+		cn3dmsg.h		ncbithr.h		suggest.h \
+		cn3dopen.h		ncbitime.h		suggslp.h \
+		cn3dsave.h		ncbiurl.h		sugmap.h \
+		cn3dshim.h		ncbiwin.h		sugprefx.h \
+		cn3dstyl.h		ncbiwww.h		tax0.h \
+		cn3dxprt.h		netblap3.h		tax1map.h \
+		codon.h			netcnfg.h		taxblast.h \
+		con_file.h		netentr.h		taxext.h \
+		con_sock.h		netlib.h		taxinc.h \
+		con_stateless.h	netpriv.h		taxon1.h \
+		con_url.h		netscape.h		taxuerr.h \
+		ni_asn.h		taxutil.h \
+		connectn.h		ni_defin.h		terr.h \
+		connectr.h		ni_encr.h		tfuns.h \
+		connutil.h		ni_error.h		toasn3.h \
+		corematx.h		ni_lib.h		tofasta.h \
+		db_list.h		ni_lib_.h		tofile.h \
+		ddvclick.h		ni_list.h		tomedlin.h \
+		ddvcolor.h		ni_msg.h		toporg.h \
+		ddvcreate.h		ni_net.h		tree.h \
+		ddvgraph.h		ni_types.h		treemgr.h \
+		ddvmain.h		objacces.h		treeview.h \
+		ddvopen.h		objalign.h		treevint.h \
+		ddvpanel.h		objalignloc.h	tsprintf.h \
+		diagnost.h		objall.h		txalign.h \
+		dlogutil.h		objbibli.h		txclient.h \
+		document.h		objblock.h		txcommon.h \
+		dotmatrx.h		objblst3.h		udvdef.h \
+		drawingp.h		objcdd.h		udviewer.h \
+		drawseq.h		objcode.h		udvseq.h \
+		dust.h			objent2.h		undefwin.h \
+		dvncode.h		objentr.h		urkbias.h \
+		echo_asn.h		objfdef.h		urkcnsrt.h \
+		edutil.h		objfeat.h		urkdust.h \
+		ent2api.h		objgen.h		urkepi.h \
+		entrez.h		objloc.h		urkfltr.h \
+		errdefn.h		objmdrs.h		urkgraph.h \
+		explore.h		objmedli.h		urkpcc.h \
+		fea2seg.h		objmgr.h		urkptpf.h \
+		ffprint.h		objmime.h		urksigu.h \
+		findrepl.h		objmla.h		urktree.h \
+		fstyle.h		objmmdb1.h		urkutil.h \
+		fstylep.h		objmmdb2.h		urlquery.h \
+		ftusrstr.h		objmmdb3.h		utilpars.h \
+		gapxdrop.h		objneten.h		utilpub.h \
+		gather.h		objproj.h		valid.h \
+		gbfeat.h		objprt.h		validatr.h \
+		gbftdef.h		objpub.h		validerr.h \
+		gbparlex.h		objpubd.h		vast2cn3d.h \
+		gifgen.h		objpubme.h		vast2mage.h \
+		glbpic.h		objres.h		vast2pdb.h \
+		gphdraw.h		objseq.h		vastlocl.h \
+		gtrdraw.h		objsset.h		vastsrv.h \
+		gxydraw.h		objsub.h		vecscnapi.h \
+		id1.h			objtax1.h		vecscrn.h \
+		id1arch.h		objtaxc0.h		vibdefns.h \
+		id1gen.h		odlbox.h		vibfltr.h \
+		id1map.h		panels.h		vibforms.h \
+		image.h			parsegb.h		vibgraph.h \
+		imagelst.h		pdiagnos.h		vibincld.h \
+		import.h		pgppop.h		vibmouse.h \
+		jzcoll.h		pictur3d.h		vibpcc.h \
+		jzmisc.h		picture.h		vibprocs.h \
+		layout.h		picturep.h		vibrant.h \
+		lbapi.h			pmfapi.h		vibtree.h \
+		legend.h		pobutil.h		vibtypes.h \
+		list.h			posit.h			viewer.h \
+		lnfac.h			ppict3d.h		viewer3d.h \
+		lookup.h		profiles.h		viewerp.h \
+		lsqfetch.h		prtgene.h		viewmgr.h \
+		mapgene.h		prtutil.h		vsm.h \
+		mapmime.h		prunebsc.h		vsmfile.h \
+		mapmla.h		pubdesc.h		vsmpriv.h \
+		mappingp.h		puberr.h		vsmutil.h \
+		mapproj.h		qblastapi.h		wwwblast.h \
+		mappubme.h		readdb.h \
+		maputil.h		regex.h
+
d43 1
a43 2
+	${MKDIR} ${PREFIX}/include/ncbi
+	pwd
d45 1
a45 1
+	for file in $(INC); do \
d48 4
d53 1
a53 1
+install: linstall binstall
@


1.1
log
@New Port: biology/ncbi-toolkit
National Center for Biotechnology Information (NCBI) Development Toolkit.

PR:		22388
Submitted by:	Tony Maher <tony.maher@@ebioinformatics.com>
@
text
@d8 1
a8 1
+EXE=	Cn3Dv3d Nentrez Psequin \
@

