head	1.16;
access;
symbols
	RELEASE_8_3_0:1.15
	RELEASE_9_0_0:1.15
	RELEASE_7_4_0:1.15
	RELEASE_8_2_0:1.15
	RELEASE_6_EOL:1.15
	RELEASE_8_1_0:1.15
	RELEASE_7_3_0:1.15
	RELEASE_8_0_0:1.15
	RELEASE_7_2_0:1.15
	RELEASE_7_1_0:1.14
	RELEASE_6_4_0:1.14
	RELEASE_5_EOL:1.14
	RELEASE_7_0_0:1.14
	RELEASE_6_3_0:1.14
	PRE_XORG_7:1.14
	RELEASE_4_EOL:1.14
	RELEASE_6_2_0:1.14
	RELEASE_6_1_0:1.13
	RELEASE_5_5_0:1.13
	RELEASE_6_0_0:1.10
	RELEASE_5_4_0:1.10
	RELEASE_4_11_0:1.9
	RELEASE_5_3_0:1.8
	RELEASE_4_10_0:1.8
	RELEASE_5_2_1:1.8
	RELEASE_5_2_0:1.8
	RELEASE_4_9_0:1.7
	RELEASE_5_1_0:1.7
	RELEASE_4_8_0:1.6
	RELEASE_5_0_0:1.6
	RELEASE_4_7_0:1.6
	RELEASE_4_6_2:1.5
	RELEASE_4_6_1:1.5
	RELEASE_4_6_0:1.5
	RELEASE_5_0_DP1:1.5
	RELEASE_4_5_0:1.4
	RELEASE_4_4_0:1.3
	RELEASE_4_3_0:1.2
	RELEASE_4_2_0:1.2;
locks; strict;
comment	@# @;


1.16
date	2013.03.14.12.55.40;	author svnexp;	state Exp;
branches;
next	1.15;

1.15
date	2009.03.28.16.59.39;	author miwi;	state Exp;
branches;
next	1.14;

1.14
date	2006.06.06.12.05.19;	author itetcu;	state Exp;
branches;
next	1.13;

1.13
date	2006.01.22.01.25.23;	author edwin;	state Exp;
branches;
next	1.12;

1.12
date	2006.01.14.19.34.43;	author pav;	state Exp;
branches;
next	1.11;

1.11
date	2005.10.11.22.33.34;	author sem;	state Exp;
branches;
next	1.10;

1.10
date	2005.03.19.21.32.13;	author pav;	state Exp;
branches;
next	1.9;

1.9
date	2004.11.01.22.21.01;	author pav;	state Exp;
branches;
next	1.8;

1.8
date	2003.10.22.09.29.52;	author osa;	state Exp;
branches;
next	1.7;

1.7
date	2003.05.05.12.24.07;	author arved;	state Exp;
branches;
next	1.6;

1.6
date	2002.09.21.06.59.27;	author ijliao;	state Exp;
branches;
next	1.5;

1.5
date	2002.02.22.07.57.05;	author pat;	state Exp;
branches;
next	1.4;

1.4
date	2001.09.19.13.03.17;	author wjv;	state Exp;
branches;
next	1.3;

1.3
date	2001.06.20.14.25.54;	author wjv;	state Exp;
branches;
next	1.2;

1.2
date	2000.11.02.11.25.41;	author jeh;	state Exp;
branches;
next	1.1;

1.1
date	2000.10.29.13.56.23;	author jeh;	state Exp;
branches;
next	;


desc
@@


1.16
log
@## SVN ## Exported commit - http://svnweb.freebsd.org/changeset/base/314129
## SVN ## CVS IS DEPRECATED: http://wiki.freebsd.org/CvsIsDeprecated
@
text
@bin/Nentrez
bin/Psequin
bin/asn2ff
bin/asn2gb
bin/asn2idx
bin/asn2xml
bin/asndhuff
bin/asntool
bin/bl2seq
bin/blastall
bin/blastcl3
bin/blastclust
bin/blastpgp
bin/cdscan
bin/checksub
bin/copymat
bin/ddv
bin/debruijn
bin/demo_regexp
bin/demo_regexp_grep
bin/dosimple
bin/entrcmd
bin/entrez2
bin/errhdr
bin/fa2htgs
bin/fastacmd
bin/findspl
bin/formatdb
bin/formatrpsdb
bin/gene2xml
bin/getmesh
bin/getpub
bin/gil2bin
bin/idfetch
bin/impala
bin/indexpub
bin/makemat
bin/makeset
bin/megablast
bin/ncbisort
bin/rpsblast
bin/sbtedit
bin/seedtop
bin/seqtest
bin/taxblast
bin/tbl2asn
bin/udv
bin/vecscreen
include/ncbi/FSpCompat.h
include/ncbi/FullPath.h
include/ncbi/MoreCarbonAccessors.h
include/ncbi/MoreFilesExtras.h
include/ncbi/MoreFilesX.h
include/ncbi/Optimization.h
include/ncbi/OptimizationEnd.h
include/ncbi/PubStructAsn.h
include/ncbi/a2ferr.h
include/ncbi/a2ferrdf.h
include/ncbi/a2fstruc.h
include/ncbi/aacomp.h
include/ncbi/accentr.h
include/ncbi/accid1.h
include/ncbi/accutils.h
include/ncbi/acerdapi.h
include/ncbi/aceread.h
include/ncbi/actutils.h
include/ncbi/algorend.h
include/ncbi/alignloc.h
include/ncbi/alignmgr.h
include/ncbi/alignmgr2.h
include/ncbi/alignval.h
include/ncbi/aliparse.h
include/ncbi/aliread.h
include/ncbi/all.h
include/ncbi/allpub.h
include/ncbi/apparam.h
include/ncbi/asn.h
include/ncbi/asn2ff.h
include/ncbi/asn2ff6.h
include/ncbi/asn2ffg.h
include/ncbi/asn2ffp.h
include/ncbi/asn2gnbi.h
include/ncbi/asn2gnbk.h
include/ncbi/asn2gnbp.h
include/ncbi/asn2graphic.h
include/ncbi/asn2graphicp.h
include/ncbi/asnacces.h
include/ncbi/asnalign.h
include/ncbi/asnbibli.h
include/ncbi/asnblock.h
include/ncbi/asncode.h
include/ncbi/asnent2.h
include/ncbi/asnentgene.h
include/ncbi/asnfdef.h
include/ncbi/asnfeat.h
include/ncbi/asngbseq.h
include/ncbi/asngen.h
include/ncbi/asnid0.h
include/ncbi/asninsdseq.h
include/ncbi/asnloc.h
include/ncbi/asnmacro.h
include/ncbi/asnmdrs.h
include/ncbi/asnmedli.h
include/ncbi/asnmim.h
include/ncbi/asnmime.h
include/ncbi/asnmla.h
include/ncbi/asnmla2.h
include/ncbi/asnneten.h
include/ncbi/asnproj.h
include/ncbi/asnprt.h
include/ncbi/asnpub.h
include/ncbi/asnpubme.h
include/ncbi/asnres.h
include/ncbi/asnseq.h
include/ncbi/asnsset.h
include/ncbi/asnsubmt.h
include/ncbi/asntable.h
include/ncbi/asntax1.h
include/ncbi/asntax3.h
include/ncbi/asntaxon.h
include/ncbi/asntseq.h
include/ncbi/asnvalid.h
include/ncbi/bandalgn.h
include/ncbi/binary.h
include/ncbi/biosrc.h
include/ncbi/blast.h
include/ncbi/blast_dust.h
include/ncbi/blastconcat.h
include/ncbi/blastconcatdef.h
include/ncbi/blastdef.h
include/ncbi/blastkar.h
include/ncbi/blastpat.h
include/ncbi/blastpri.h
include/ncbi/blfmtutl.h
include/ncbi/blocks.h
include/ncbi/blstspc.h
include/ncbi/blstxml.h
include/ncbi/bspview.h
include/ncbi/bxmlobj.h
include/ncbi/casn.h
include/ncbi/cdconfig.h
include/ncbi/cdd.h
include/ncbi/cddapi.h
include/ncbi/cddposutil.h
include/ncbi/cddutil.h
include/ncbi/cdentrez.h
include/ncbi/cdnewlib.h
include/ncbi/cdrgn.h
include/ncbi/cdrom.h
include/ncbi/cdromlib.h
include/ncbi/cn3d.h
include/ncbi/cn3dentr.h
include/ncbi/cn3dmain.h
include/ncbi/cn3dmesh.h
include/ncbi/cn3dmodl.h
include/ncbi/cn3dmsel.h
include/ncbi/cn3dmsg.h
include/ncbi/cn3dopen.h
include/ncbi/cn3dsave.h
include/ncbi/cn3dshim.h
include/ncbi/cn3dstyl.h
include/ncbi/cn3dxprt.h
include/ncbi/codon.h
include/ncbi/compo_heap.h
include/ncbi/compo_mode_condition.h
include/ncbi/composition_adjustment.h
include/ncbi/composition_constants.h
include/ncbi/connect/connect_export.h
include/ncbi/connect/ncbi_ansi_ext.h
include/ncbi/connect/ncbi_assert.h
include/ncbi/connect/ncbi_base64.h
include/ncbi/connect/ncbi_buffer.h
include/ncbi/connect/ncbi_comm.h
include/ncbi/connect/ncbi_config.h
include/ncbi/connect/ncbi_connection.h
include/ncbi/connect/ncbi_connector.h
include/ncbi/connect/ncbi_connssl.h
include/ncbi/connect/ncbi_connutil.h
include/ncbi/connect/ncbi_core.h
include/ncbi/connect/ncbi_core_c.h
include/ncbi/connect/ncbi_dispd.h
include/ncbi/connect/ncbi_file_connector.h
include/ncbi/connect/ncbi_ftp_connector.h
include/ncbi/connect/ncbi_gnutls.h
include/ncbi/connect/ncbi_heapmgr.h
include/ncbi/connect/ncbi_host_info.h
include/ncbi/connect/ncbi_host_infop.h
include/ncbi/connect/ncbi_http_connector.h
include/ncbi/connect/ncbi_lb.h
include/ncbi/connect/ncbi_lbsmd.h
include/ncbi/connect/ncbi_local.h
include/ncbi/connect/ncbi_memory_connector.h
include/ncbi/connect/ncbi_priv.h
include/ncbi/connect/ncbi_sendmail.h
include/ncbi/connect/ncbi_server_info.h
include/ncbi/connect/ncbi_server_infop.h
include/ncbi/connect/ncbi_service.h
include/ncbi/connect/ncbi_service_connector.h
include/ncbi/connect/ncbi_servicep.h
include/ncbi/connect/ncbi_socket.h
include/ncbi/connect/ncbi_socket_connector.h
include/ncbi/connect/ncbi_socket_unix.h
include/ncbi/connect/ncbi_socketp.h
include/ncbi/connect/ncbi_types.h
include/ncbi/connect/ncbi_util.h
include/ncbi/connect/ncbi_version.h
include/ncbi/corematx.h
include/ncbi/db_list.h
include/ncbi/ddvclick.h
include/ncbi/ddvcolor.h
include/ncbi/ddvcreate.h
include/ncbi/ddvgraph.h
include/ncbi/ddvmain.h
include/ncbi/ddvopen.h
include/ncbi/ddvpanel.h
include/ncbi/diagnost.h
include/ncbi/dlogutil.h
include/ncbi/document.h
include/ncbi/dotmatrx.h
include/ncbi/dotseq.h
include/ncbi/dotviewer.h
include/ncbi/drawingp.h
include/ncbi/drawseq.h
include/ncbi/dust.h
include/ncbi/dvncode.h
include/ncbi/edutil.h
include/ncbi/egkludge.h
include/ncbi/ent2api.h
include/ncbi/entrez.h
include/ncbi/entrez2.h
include/ncbi/errdefn.h
include/ncbi/explore.h
include/ncbi/fastadl.h
include/ncbi/fdlKludge.h
include/ncbi/fdlobj.h
include/ncbi/fea2seg.h
include/ncbi/ffprint.h
include/ncbi/findrepl.h
include/ncbi/fstyle.h
include/ncbi/fstylep.h
include/ncbi/ftusrstr.h
include/ncbi/gapxdrop.h
include/ncbi/gather.h
include/ncbi/gbfeat.h
include/ncbi/gbftdef.h
include/ncbi/gbparlex.h
include/ncbi/gifgen.h
include/ncbi/glbpic.h
include/ncbi/gphdraw.h
include/ncbi/gtrdraw.h
include/ncbi/gxydraw.h
include/ncbi/id1.h
include/ncbi/id1arch.h
include/ncbi/id1gen.h
include/ncbi/id1map.h
include/ncbi/id2.h
include/ncbi/id2gen.h
include/ncbi/id2map.h
include/ncbi/id2sgen.h
include/ncbi/image.h
include/ncbi/imagelst.h
include/ncbi/import.h
include/ncbi/ingenext.h
include/ncbi/ingengraph.h
include/ncbi/ingenwin.h
include/ncbi/jsavlt.h
include/ncbi/jzcoll.h
include/ncbi/jzmisc.h
include/ncbi/layout.h
include/ncbi/legend.h
include/ncbi/list.h
include/ncbi/lnfac.h
include/ncbi/lookup.h
include/ncbi/lsqfetch.h
include/ncbi/macroapi.h
include/ncbi/macrodlg.h
include/ncbi/mapcn3d.h
include/ncbi/mapgene.h
include/ncbi/mapmime.h
include/ncbi/mapmla.h
include/ncbi/mappingp.h
include/ncbi/mapproj.h
include/ncbi/mappubme.h
include/ncbi/maputil.h
include/ncbi/matrix.h
include/ncbi/matrix_frequency_data.h
include/ncbi/mbalign.h
include/ncbi/mblast.h
include/ncbi/mconsist.h
include/ncbi/mdrcherr.h
include/ncbi/medarch.h
include/ncbi/medutil.h
include/ncbi/medview.h
include/ncbi/mimapi.h
include/ncbi/mkbioseq.h
include/ncbi/mla2api.h
include/ncbi/mlkludge.h
include/ncbi/mmdb1.h
include/ncbi/mmdb2.h
include/ncbi/mmdb3.h
include/ncbi/mmdbapi.h
include/ncbi/mmdbapi1.h
include/ncbi/mmdbapi2.h
include/ncbi/mmdbapi3.h
include/ncbi/mmdbapi4.h
include/ncbi/mmdbdata.h
include/ncbi/mmdblocl.h
include/ncbi/motif.h
include/ncbi/ncbi.h
include/ncbi/ncbi_skew_guard.h
include/ncbi/ncbibs.h
include/ncbi/ncbidraw.h
include/ncbi/ncbienv.h
include/ncbi/ncbierr.h
include/ncbi/ncbifile.h
include/ncbi/ncbigif.h
include/ncbi/ncbilang.h
include/ncbi/ncbilcl.h
include/ncbi/ncbimain.h
include/ncbi/ncbimath.h
include/ncbi/ncbimem.h
include/ncbi/ncbimisc.h
include/ncbi/ncbimsg.h
include/ncbi/ncbinet.h
include/ncbi/ncbiopt.h
include/ncbi/ncbiport.h
include/ncbi/ncbiprop.h
include/ncbi/ncbisam.h
include/ncbi/ncbisami.h
include/ncbi/ncbisgml.h
include/ncbi/ncbisort.h
include/ncbi/ncbisrti.h
include/ncbi/ncbistd.h
include/ncbi/ncbistr.h
include/ncbi/ncbithr.h
include/ncbi/ncbitime.h
include/ncbi/ncbiwin.h
include/ncbi/ncbiwww.h
include/ncbi/needleman.h
include/ncbi/netblap3.h
include/ncbi/netcnfg.h
include/ncbi/netentr.h
include/ncbi/netlib.h
include/ncbi/netpriv.h
include/ncbi/netscape.h
include/ncbi/ni_error.h
include/ncbi/ni_lib_.h
include/ncbi/ni_types.h
include/ncbi/nlm_linear_algebra.h
include/ncbi/objacces.h
include/ncbi/objalign.h
include/ncbi/objalignloc.h
include/ncbi/objall.h
include/ncbi/objbibli.h
include/ncbi/objblock.h
include/ncbi/objblst3.h
include/ncbi/objcdd.h
include/ncbi/objcn3d.h
include/ncbi/objcode.h
include/ncbi/objegkludge.h
include/ncbi/objent2.h
include/ncbi/objentgene.h
include/ncbi/objentr.h
include/ncbi/objfdef.h
include/ncbi/objfeat.h
include/ncbi/objgbseq.h
include/ncbi/objgen.h
include/ncbi/objinsdseq.h
include/ncbi/objloc.h
include/ncbi/objmacro.h
include/ncbi/objmdrs.h
include/ncbi/objmedli.h
include/ncbi/objmgr.h
include/ncbi/objmim.h
include/ncbi/objmime.h
include/ncbi/objmla.h
include/ncbi/objmla2.h
include/ncbi/objmmdb1.h
include/ncbi/objmmdb2.h
include/ncbi/objmmdb3.h
include/ncbi/objneten.h
include/ncbi/objproj.h
include/ncbi/objprt.h
include/ncbi/objpub.h
include/ncbi/objpubd.h
include/ncbi/objpubme.h
include/ncbi/objres.h
include/ncbi/objscoremat.h
include/ncbi/objseq.h
include/ncbi/objspell.h
include/ncbi/objsset.h
include/ncbi/objsub.h
include/ncbi/objtable.h
include/ncbi/objtax1.h
include/ncbi/objtax3.h
include/ncbi/objtseq.h
include/ncbi/objvalid.h
include/ncbi/odlbox.h
include/ncbi/optimize_target_freq.h
include/ncbi/panels.h
include/ncbi/parsegb.h
include/ncbi/pcre.h
include/ncbi/pcre_config.h
include/ncbi/pcre_internal.h
include/ncbi/pcreposix.h
include/ncbi/pdiagnos.h
include/ncbi/pgppop.h
include/ncbi/pictur3d.h
include/ncbi/picture.h
include/ncbi/picturep.h
include/ncbi/pmfapi.h
include/ncbi/pobutil.h
include/ncbi/posit.h
include/ncbi/ppict3d.h
include/ncbi/profiles.h
include/ncbi/prtgene.h
include/ncbi/prtutil.h
include/ncbi/prunebsc.h
include/ncbi/pubdesc.h
include/ncbi/puberr.h
include/ncbi/qblastapi.h
include/ncbi/readdb.h
include/ncbi/redo_alignment.h
include/ncbi/regex.h
include/ncbi/rpsutil.h
include/ncbi/saldist.h
include/ncbi/saled.h
include/ncbi/saledit.h
include/ncbi/salfiles.h
include/ncbi/salign.h
include/ncbi/salmedia.h
include/ncbi/salogif.h
include/ncbi/salpacc.h
include/ncbi/salpanel.h
include/ncbi/salparam.h
include/ncbi/salpedit.h
include/ncbi/salprop.h
include/ncbi/salpstat.h
include/ncbi/salptool.h
include/ncbi/salsa.h
include/ncbi/salsap.h
include/ncbi/salstruc.h
include/ncbi/salutil.h
include/ncbi/samutil.h
include/ncbi/satutil.h
include/ncbi/scoremat.h
include/ncbi/sdisplay.h
include/ncbi/sec.h
include/ncbi/seed.h
include/ncbi/seg.h
include/ncbi/seqanal.h
include/ncbi/seqcons.h
include/ncbi/seqfltr.h
include/ncbi/seqgraph.h
include/ncbi/seqgrphx.h
include/ncbi/seqmgr.h
include/ncbi/seqmtrx.h
include/ncbi/seqpanel.h
include/ncbi/seqpcc.h
include/ncbi/seqport.h
include/ncbi/seqscrl.h
include/ncbi/seqsplit.h
include/ncbi/seqsub.h
include/ncbi/sequtil.h
include/ncbi/shim3d.h
include/ncbi/showalignwrap.h
include/ncbi/simple.h
include/ncbi/simutil.h
include/ncbi/smith_waterman.h
include/ncbi/spell.h
include/ncbi/spellapi.h
include/ncbi/spidey.h
include/ncbi/splutil.h
include/ncbi/sqnutils.h
include/ncbi/strimprt.h
include/ncbi/strucapi.h
include/ncbi/stsutil.h
include/ncbi/subutil.h
include/ncbi/suggapi.h
include/ncbi/suggen.h
include/ncbi/suggest.h
include/ncbi/suggslp.h
include/ncbi/sugmap.h
include/ncbi/sugprefx.h
include/ncbi/tax1map.h
include/ncbi/tax3api.h
include/ncbi/taxblast.h
include/ncbi/taxext.h
include/ncbi/taxinc.h
include/ncbi/taxon1.h
include/ncbi/taxuerr.h
include/ncbi/taxutil.h
include/ncbi/terr.h
include/ncbi/tfuns.h
include/ncbi/thrdatd.h
include/ncbi/thrddecl.h
include/ncbi/toasn3.h
include/ncbi/tofasta.h
include/ncbi/tofile.h
include/ncbi/tomedlin.h
include/ncbi/toporg.h
include/ncbi/tree.h
include/ncbi/treemgr.h
include/ncbi/treeview.h
include/ncbi/treevint.h
include/ncbi/tsprintf.h
include/ncbi/txalign.h
include/ncbi/txclient.h
include/ncbi/txcommon.h
include/ncbi/udvdef.h
include/ncbi/udviewer.h
include/ncbi/udvseq.h
include/ncbi/undefwin.h
include/ncbi/unified_pvalues.h
include/ncbi/urkbias.h
include/ncbi/urkcnsrt.h
include/ncbi/urkdust.h
include/ncbi/urkepi.h
include/ncbi/urkfltr.h
include/ncbi/urkgraph.h
include/ncbi/urkpcc.h
include/ncbi/urkptpf.h
include/ncbi/urksigu.h
include/ncbi/urktree.h
include/ncbi/urkutil.h
include/ncbi/urlquery.h
include/ncbi/utilpars.h
include/ncbi/utilpub.h
include/ncbi/valapi.h
include/ncbi/valdlg.h
include/ncbi/valid.h
include/ncbi/validatr.h
include/ncbi/validerr.h
include/ncbi/vast2cn3d.h
include/ncbi/vast2mage.h
include/ncbi/vast2pdb.h
include/ncbi/vastlocl.h
include/ncbi/vastsrv.h
include/ncbi/vecscnapi.h
include/ncbi/vecscrn.h
include/ncbi/vibdefns.h
include/ncbi/vibfltr.h
include/ncbi/vibforms.h
include/ncbi/vibgraph.h
include/ncbi/vibincld.h
include/ncbi/vibmain.h
include/ncbi/vibmouse.h
include/ncbi/vibpcc.h
include/ncbi/vibprocs.h
include/ncbi/vibrant.h
include/ncbi/vibrgb.h
include/ncbi/vibtree.h
include/ncbi/vibtypes.h
include/ncbi/viewer.h
include/ncbi/viewer3d.h
include/ncbi/viewerp.h
include/ncbi/viewmgr.h
include/ncbi/vsm.h
include/ncbi/vsmfile.h
include/ncbi/vsmpriv.h
include/ncbi/vsmutil.h
include/ncbi/wwwblast.h
include/ncbi/xmlblast.h
lib/ncbi/libblast.a
lib/ncbi/libblastapi.a
lib/ncbi/libblastcompadj.a
lib/ncbi/libddvlib.a
lib/ncbi/libncbi.a
lib/ncbi/libncbiCacc.a
lib/ncbi/libncbiNacc.a
lib/ncbi/libncbiacc.a
lib/ncbi/libncbicdr.a
lib/ncbi/libncbicn3d.a
lib/ncbi/libncbidesk.a
lib/ncbi/libncbiid1.a
lib/ncbi/libncbimla.a
lib/ncbi/libncbimmdb.a
lib/ncbi/libncbiobj.a
lib/ncbi/libncbitool.a
lib/ncbi/libncbitxc2.a
lib/ncbi/libnetblast.a
lib/ncbi/libnetcli.a
lib/ncbi/libnetentr.a
lib/ncbi/libregexp.a
lib/ncbi/libvibgif.a
lib/ncbi/libvibnet.a
lib/ncbi/libvibrant.a
%%PORTDOCS%%%%DOCSDIR%%/FAQ.txt
%%PORTDOCS%%%%DOCSDIR%%/README.asn2xml
%%PORTDOCS%%%%DOCSDIR%%/README.sdk
%%PORTDOCS%%%%DOCSDIR%%/access.txt
%%PORTDOCS%%%%DOCSDIR%%/asn2gb.txt
%%PORTDOCS%%%%DOCSDIR%%/asn2gph.txt
%%PORTDOCS%%%%DOCSDIR%%/blast/bl2seq.html
%%PORTDOCS%%%%DOCSDIR%%/blast/blast.html
%%PORTDOCS%%%%DOCSDIR%%/blast/blastall.html
%%PORTDOCS%%%%DOCSDIR%%/blast/blastclust.html
%%PORTDOCS%%%%DOCSDIR%%/blast/blastdb.html
%%PORTDOCS%%%%DOCSDIR%%/blast/blastftp.html
%%PORTDOCS%%%%DOCSDIR%%/blast/blastpgp.html
%%PORTDOCS%%%%DOCSDIR%%/blast/fastacmd.html
%%PORTDOCS%%%%DOCSDIR%%/blast/filter.html
%%PORTDOCS%%%%DOCSDIR%%/blast/formatdb.html
%%PORTDOCS%%%%DOCSDIR%%/blast/formatrpsdb.html
%%PORTDOCS%%%%DOCSDIR%%/blast/history.html
%%PORTDOCS%%%%DOCSDIR%%/blast/impala.html
%%PORTDOCS%%%%DOCSDIR%%/blast/index.html
%%PORTDOCS%%%%DOCSDIR%%/blast/megablast.html
%%PORTDOCS%%%%DOCSDIR%%/blast/netblast.html
%%PORTDOCS%%%%DOCSDIR%%/blast/rpsblast.html
%%PORTDOCS%%%%DOCSDIR%%/blast/scoring.pdf
%%PORTDOCS%%%%DOCSDIR%%/blast/seedtop.html
%%PORTDOCS%%%%DOCSDIR%%/blast/web_blast.pl
%%PORTDOCS%%%%DOCSDIR%%/dispatcher.html
%%PORTDOCS%%%%DOCSDIR%%/fa2htgs/README
%%PORTDOCS%%%%DOCSDIR%%/fa2htgs/updateHtgsDoc
%%PORTDOCS%%%%DOCSDIR%%/firedialog.gif
%%PORTDOCS%%%%DOCSDIR%%/firewall.html
%%PORTDOCS%%%%DOCSDIR%%/fwd_check.sh
%%PORTDOCS%%%%DOCSDIR%%/gene2xml.txt
%%PORTDOCS%%%%DOCSDIR%%/images/affil.png
%%PORTDOCS%%%%DOCSDIR%%/images/annot.png
%%PORTDOCS%%%%DOCSDIR%%/images/authors.png
%%PORTDOCS%%%%DOCSDIR%%/images/cds_edit.png
%%PORTDOCS%%%%DOCSDIR%%/images/contact.png
%%PORTDOCS%%%%DOCSDIR%%/images/desktop.png
%%PORTDOCS%%%%DOCSDIR%%/images/format.png
%%PORTDOCS%%%%DOCSDIR%%/images/genbank.png
%%PORTDOCS%%%%DOCSDIR%%/images/graphic.png
%%PORTDOCS%%%%DOCSDIR%%/images/loc_page.png
%%PORTDOCS%%%%DOCSDIR%%/images/logo.png
%%PORTDOCS%%%%DOCSDIR%%/images/ncbi_sequin.css
%%PORTDOCS%%%%DOCSDIR%%/images/net_cfg.png
%%PORTDOCS%%%%DOCSDIR%%/images/nucaln.png
%%PORTDOCS%%%%DOCSDIR%%/images/nucset.png
%%PORTDOCS%%%%DOCSDIR%%/images/nucsing1.png
%%PORTDOCS%%%%DOCSDIR%%/images/nucsing2.png
%%PORTDOCS%%%%DOCSDIR%%/images/organism.png
%%PORTDOCS%%%%DOCSDIR%%/images/props_pg.png
%%PORTDOCS%%%%DOCSDIR%%/images/protein1.png
%%PORTDOCS%%%%DOCSDIR%%/images/protein2.png
%%PORTDOCS%%%%DOCSDIR%%/images/sequence.png
%%PORTDOCS%%%%DOCSDIR%%/images/submit.png
%%PORTDOCS%%%%DOCSDIR%%/images/update.png
%%PORTDOCS%%%%DOCSDIR%%/images/validate.png
%%PORTDOCS%%%%DOCSDIR%%/images/welcome.png
%%PORTDOCS%%%%DOCSDIR%%/ncbixml.txt
%%PORTDOCS%%%%DOCSDIR%%/sdk.doc
%%PORTDOCS%%%%DOCSDIR%%/seq_install/Makefile
%%PORTDOCS%%%%DOCSDIR%%/seq_install/bg.gif
%%PORTDOCS%%%%DOCSDIR%%/seq_install/ftp_example.css
%%PORTDOCS%%%%DOCSDIR%%/seq_install/ftp_example.xml
%%PORTDOCS%%%%DOCSDIR%%/seq_install/left.GIF
%%PORTDOCS%%%%DOCSDIR%%/seq_install/mac-ie.css
%%PORTDOCS%%%%DOCSDIR%%/seq_install/mac-netscape.css
%%PORTDOCS%%%%DOCSDIR%%/seq_install/main.xslt
%%PORTDOCS%%%%DOCSDIR%%/seq_install/ncbi_sequin.css
%%PORTDOCS%%%%DOCSDIR%%/seq_install/seq_download.css
%%PORTDOCS%%%%DOCSDIR%%/seq_install/seq_download.html
%%PORTDOCS%%%%DOCSDIR%%/seq_install/seq_download.xml
%%PORTDOCS%%%%DOCSDIR%%/seq_install/seq_ftp_download.css
%%PORTDOCS%%%%DOCSDIR%%/seq_install/seq_ftp_download.html
%%PORTDOCS%%%%DOCSDIR%%/seq_install/seq_ftp_download.xml
%%PORTDOCS%%%%DOCSDIR%%/seq_install/seq_install.html
%%PORTDOCS%%%%DOCSDIR%%/seq_install/seq_mac_download.css
%%PORTDOCS%%%%DOCSDIR%%/seq_install/seq_mac_download.html
%%PORTDOCS%%%%DOCSDIR%%/seq_install/seq_mac_download.xml
%%PORTDOCS%%%%DOCSDIR%%/seq_install/seq_trouble.css
%%PORTDOCS%%%%DOCSDIR%%/seq_install/seq_trouble.html
%%PORTDOCS%%%%DOCSDIR%%/seq_install/seq_trouble.xml
%%PORTDOCS%%%%DOCSDIR%%/seq_install/seq_unix_download.css
%%PORTDOCS%%%%DOCSDIR%%/seq_install/seq_unix_download.html
%%PORTDOCS%%%%DOCSDIR%%/seq_install/seq_unix_download.xml
%%PORTDOCS%%%%DOCSDIR%%/seq_install/seq_win_download.css
%%PORTDOCS%%%%DOCSDIR%%/seq_install/seq_win_download.html
%%PORTDOCS%%%%DOCSDIR%%/seq_install/seq_win_download.xml
%%PORTDOCS%%%%DOCSDIR%%/seq_install/sequin-icon-win.gif
%%PORTDOCS%%%%DOCSDIR%%/seq_install/sniff.js
%%PORTDOCS%%%%DOCSDIR%%/seq_install/spacer10.GIF
%%PORTDOCS%%%%DOCSDIR%%/seq_install/template.xml
%%PORTDOCS%%%%DOCSDIR%%/seq_install/win-ie.css
%%PORTDOCS%%%%DOCSDIR%%/seq_install/win-ie3.css
%%PORTDOCS%%%%DOCSDIR%%/seq_install/win-netscape.css
%%PORTDOCS%%%%DOCSDIR%%/sequin.htm
%%PORTDOCS%%%%DOCSDIR%%/tbl2asn.txt
%%DATADIR%%/16SCore.nhr
%%DATADIR%%/16SCore.nin
%%DATADIR%%/16SCore.nsq
%%DATADIR%%/64-matK-FINAL-aligned-DNA.fas.nhr
%%DATADIR%%/64-matK-FINAL-aligned-DNA.fas.nin
%%DATADIR%%/64-matK-FINAL-aligned-DNA.fas.nsq
%%DATADIR%%/64-rbcL-FINAL-aligned-DNA.fas.nhr
%%DATADIR%%/64-rbcL-FINAL-aligned-DNA.fas.nin
%%DATADIR%%/64-rbcL-FINAL-aligned-DNA.fas.nsq
%%DATADIR%%/BLOSUM45
%%DATADIR%%/BLOSUM50
%%DATADIR%%/BLOSUM62
%%DATADIR%%/BLOSUM80
%%DATADIR%%/BLOSUM90
%%DATADIR%%/Combined16SrRNA.nhr
%%DATADIR%%/Combined16SrRNA.nin
%%DATADIR%%/Combined16SrRNA.nsq
%%DATADIR%%/Combined16SrRNA_2-12-2008.nhr
%%DATADIR%%/Combined16SrRNA_2-12-2008.nin
%%DATADIR%%/Combined16SrRNA_2-12-2008.nsq
%%DATADIR%%/ContactPotential
%%DATADIR%%/KSat.flt
%%DATADIR%%/KSchoth.flt
%%DATADIR%%/KSesigc.mat
%%DATADIR%%/KSesigl.mat
%%DATADIR%%/KSgc.flt
%%DATADIR%%/KShopp.flt
%%DATADIR%%/KSkyte.flt
%%DATADIR%%/KSmtidk.mat
%%DATADIR%%/KSmtk.mat
%%DATADIR%%/KSnsigc.mat
%%DATADIR%%/KSnsigl.mat
%%DATADIR%%/KSpcc.mat
%%DATADIR%%/KSpsigc.mat
%%DATADIR%%/KSpsigl.mat
%%DATADIR%%/KSpur.flt
%%DATADIR%%/KSpyr.flt
%%DATADIR%%/LSURef_93.fasta.nhr
%%DATADIR%%/LSURef_93.fasta.nin
%%DATADIR%%/LSURef_93.fasta.nsq
%%DATADIR%%/PAM250
%%DATADIR%%/PAM30
%%DATADIR%%/PAM70
%%DATADIR%%/SSURef_93.fasta.nhr
%%DATADIR%%/SSURef_93.fasta.nin
%%DATADIR%%/SSURef_93.fasta.nsq
%%DATADIR%%/UniVec.nhr
%%DATADIR%%/UniVec.nin
%%DATADIR%%/UniVec.nsq
%%DATADIR%%/UniVec_Core.nhr
%%DATADIR%%/UniVec_Core.nin
%%DATADIR%%/UniVec_Core.nsq
%%DATADIR%%/asn2ff.prt
%%DATADIR%%/autofix.prt
%%DATADIR%%/blast.prt
%%DATADIR%%/bstdt.prt
%%DATADIR%%/bstdt.val
%%DATADIR%%/country_lat_lon.txt
%%DATADIR%%/ecnum_ambiguous.txt
%%DATADIR%%/ecnum_deleted.txt
%%DATADIR%%/ecnum_replaced.txt
%%DATADIR%%/ecnum_specific.txt
%%DATADIR%%/featdef.prt
%%DATADIR%%/featdef.val
%%DATADIR%%/gc.prt
%%DATADIR%%/gc.val
%%DATADIR%%/humrep.fsa
%%DATADIR%%/institution_codes.txt
%%DATADIR%%/lat_lon_country.txt
%%DATADIR%%/lat_lon_island.txt
%%DATADIR%%/lat_lon_water.txt
%%DATADIR%%/lineages.txt
%%DATADIR%%/makerpt.prt
%%DATADIR%%/ncbiendo.dat
%%DATADIR%%/ncbipnam.dat
%%DATADIR%%/ncbipros.dat
%%DATADIR%%/ncbiren.dat
%%DATADIR%%/ncbirnam.dat
%%DATADIR%%/objprt.prt
%%DATADIR%%/organelle_products.prt
%%DATADIR%%/product_rules.prt
%%DATADIR%%/pubkey.enc
%%DATADIR%%/rRNA_blast.nal
%%DATADIR%%/rRNAstrand.nal
%%DATADIR%%/seqcode.prt
%%DATADIR%%/seqcode.val
%%DATADIR%%/sequin.hlp
%%DATADIR%%/sgmlbb.ent
%%DATADIR%%/taxlist.txt
%%DATADIR%%/validrules.prt
@@dirrmtry %%DATADIR%%
%%PORTDOCS%%@@dirrm %%DOCSDIR%%/seq_install
%%PORTDOCS%%@@dirrm %%DOCSDIR%%/images
%%PORTDOCS%%@@dirrm %%DOCSDIR%%/fa2htgs
%%PORTDOCS%%@@dirrm %%DOCSDIR%%/blast
%%PORTDOCS%%@@dirrm %%DOCSDIR%%
@@dirrm lib/ncbi
@@dirrm include/ncbi/connect
@@dirrm include/ncbi
@


1.15
log
@- Update to 2009.03.01

PR:		133099
Submitted by:	Fernan Aguero <fernan.aguero@@gmail.com>
Approved by:	maintainer
@
text
@d1 2
a2 15
bin/bl2seq
bin/blastall
bin/blastcl3
bin/blastclust
bin/blastpgp
bin/copymat
bin/fastacmd
bin/formatdb
bin/formatrpsdb
bin/impala
bin/makemat
bin/megablast
bin/rpsblast
bin/seedtop
bin/taxblast
d9 6
d16 2
d19 3
d23 2
d26 1
d28 3
a32 1
bin/ddv
d35 1
d37 1
d39 1
a39 6
bin/tbl2asn
bin/vecscreen
bin/demo_regexp
bin/demo_regexp_grep
bin/errhdr
bin/gene2xml
d41 3
d45 2
a46 5
bin/test_regexp
bin/Nentrez
bin/Psequin
bin/entrez2
bin/sbtedit
d48 1
a48 37
include/ncbi/connect/connect_export.h
include/ncbi/connect/ncbi_ansi_ext.h
include/ncbi/connect/ncbi_assert.h
include/ncbi/connect/ncbi_buffer.h
include/ncbi/connect/ncbi_comm.h
include/ncbi/connect/ncbi_config.h
include/ncbi/connect/ncbi_connection.h
include/ncbi/connect/ncbi_connector.h
include/ncbi/connect/ncbi_connssl.h
include/ncbi/connect/ncbi_connutil.h
include/ncbi/connect/ncbi_core.h
include/ncbi/connect/ncbi_core_c.h
include/ncbi/connect/ncbi_dispd.h
include/ncbi/connect/ncbi_file_connector.h
include/ncbi/connect/ncbi_ftp_connector.h
include/ncbi/connect/ncbi_gnutls.h
include/ncbi/connect/ncbi_heapmgr.h
include/ncbi/connect/ncbi_host_info.h
include/ncbi/connect/ncbi_host_infop.h
include/ncbi/connect/ncbi_http_connector.h
include/ncbi/connect/ncbi_lb.h
include/ncbi/connect/ncbi_lbsmd.h
include/ncbi/connect/ncbi_local.h
include/ncbi/connect/ncbi_memory_connector.h
include/ncbi/connect/ncbi_priv.h
include/ncbi/connect/ncbi_sendmail.h
include/ncbi/connect/ncbi_server_info.h
include/ncbi/connect/ncbi_server_infop.h
include/ncbi/connect/ncbi_service.h
include/ncbi/connect/ncbi_service_connector.h
include/ncbi/connect/ncbi_servicep.h
include/ncbi/connect/ncbi_socket.h
include/ncbi/connect/ncbi_socket_connector.h
include/ncbi/connect/ncbi_socket_unix.h
include/ncbi/connect/ncbi_socketp.h
include/ncbi/connect/ncbi_types.h
include/ncbi/connect/ncbi_util.h
d122 1
a152 1
include/ncbi/codon.h
d163 1
d168 39
a246 1
include/ncbi/id1.h
d252 1
a295 1
include/ncbi/mmdb1.h
d298 1
d310 1
a345 1
include/ncbi/ni_defin.h
a346 1
include/ncbi/ni_lib.h
a347 1
include/ncbi/ni_net.h
d397 1
a483 1
include/ncbi/terr.h
d493 1
d529 2
a538 1
include/ncbi/vsm.h
d558 1
a593 1
%%PORTDOCS%%%%DOCSDIR%%/blast/blastclust.html
d597 1
a620 1
%%PORTDOCS%%%%DOCSDIR%%/images/logo.png
d631 1
a646 55
%%PORTDOCS%%%%DOCSDIR%%/man/Psequin.1
%%PORTDOCS%%%%DOCSDIR%%/man/asn2all.1
%%PORTDOCS%%%%DOCSDIR%%/man/asn2asn.1
%%PORTDOCS%%%%DOCSDIR%%/man/asn2ff.1
%%PORTDOCS%%%%DOCSDIR%%/man/asn2fsa.1
%%PORTDOCS%%%%DOCSDIR%%/man/asn2gb.1
%%PORTDOCS%%%%DOCSDIR%%/man/asn2idx.1
%%PORTDOCS%%%%DOCSDIR%%/man/asn2xml.1
%%PORTDOCS%%%%DOCSDIR%%/man/asndhuff.1
%%PORTDOCS%%%%DOCSDIR%%/man/asntool.1
%%PORTDOCS%%%%DOCSDIR%%/man/asnval.1
%%PORTDOCS%%%%DOCSDIR%%/man/bl2seq.1
%%PORTDOCS%%%%DOCSDIR%%/man/blast.1
%%PORTDOCS%%%%DOCSDIR%%/man/blastall.1
%%PORTDOCS%%%%DOCSDIR%%/man/blastall_old.1
%%PORTDOCS%%%%DOCSDIR%%/man/blastcl3.1
%%PORTDOCS%%%%DOCSDIR%%/man/blastclust.1
%%PORTDOCS%%%%DOCSDIR%%/man/blastpgp.1
%%PORTDOCS%%%%DOCSDIR%%/man/cdscan.1
%%PORTDOCS%%%%DOCSDIR%%/man/checksub.1
%%PORTDOCS%%%%DOCSDIR%%/man/cleanasn.1
%%PORTDOCS%%%%DOCSDIR%%/man/copymat.1
%%PORTDOCS%%%%DOCSDIR%%/man/ddv.1
%%PORTDOCS%%%%DOCSDIR%%/man/debruijn.1
%%PORTDOCS%%%%DOCSDIR%%/man/entrez2.1
%%PORTDOCS%%%%DOCSDIR%%/man/errhdr.1
%%PORTDOCS%%%%DOCSDIR%%/man/vecscreen.1
%%PORTDOCS%%%%DOCSDIR%%/man/fa2htgs.1
%%PORTDOCS%%%%DOCSDIR%%/man/fastacmd.1
%%PORTDOCS%%%%DOCSDIR%%/man/findspl.1
%%PORTDOCS%%%%DOCSDIR%%/man/fmerge.1
%%PORTDOCS%%%%DOCSDIR%%/man/formatdb.1
%%PORTDOCS%%%%DOCSDIR%%/man/getpub.1
%%PORTDOCS%%%%DOCSDIR%%/man/formatrpsdb.1
%%PORTDOCS%%%%DOCSDIR%%/man/gbseqget.1
%%PORTDOCS%%%%DOCSDIR%%/man/gene2xml.1
%%PORTDOCS%%%%DOCSDIR%%/man/getmesh.1
%%PORTDOCS%%%%DOCSDIR%%/man/gil2bin.1
%%PORTDOCS%%%%DOCSDIR%%/man/idfetch.1
%%PORTDOCS%%%%DOCSDIR%%/man/impala.1
%%PORTDOCS%%%%DOCSDIR%%/man/indexpub.1
%%PORTDOCS%%%%DOCSDIR%%/man/insdseqget.1
%%PORTDOCS%%%%DOCSDIR%%/man/makemat.1
%%PORTDOCS%%%%DOCSDIR%%/man/makeset.1
%%PORTDOCS%%%%DOCSDIR%%/man/megablast.1
%%PORTDOCS%%%%DOCSDIR%%/man/nps2gps.1
%%PORTDOCS%%%%DOCSDIR%%/man/rpsblast.1
%%PORTDOCS%%%%DOCSDIR%%/man/sbtedit.1
%%PORTDOCS%%%%DOCSDIR%%/man/seedtop.1
%%PORTDOCS%%%%DOCSDIR%%/man/sortbyquote.1
%%PORTDOCS%%%%DOCSDIR%%/man/spidey.1
%%PORTDOCS%%%%DOCSDIR%%/man/tbl2asn.1
%%PORTDOCS%%%%DOCSDIR%%/man/trna2sap.1
%%PORTDOCS%%%%DOCSDIR%%/man/trna2tbl.1
%%PORTDOCS%%%%DOCSDIR%%/man/udv.1
a648 1
%%PORTDOCS%%%%DOCSDIR%%/seq_install/ftp_example.css
d651 1
a651 1
%%PORTDOCS%%%%DOCSDIR%%/seq_install/seq_ftp_download.css
d661 1
a666 1
%%PORTDOCS%%%%DOCSDIR%%/seq_install/sniff.js
d678 1
d689 6
a710 1
%%DATADIR%%/PAM250
d726 1
d739 1
d754 3
d765 2
d775 8
a784 8
@@dirrm lib/ncbi
%%PORTDOCS%%@@dirrm %%DOCSDIR%%/blast
%%PORTDOCS%%@@dirrm %%DOCSDIR%%/fa2htgs
%%PORTDOCS%%@@dirrm %%DOCSDIR%%/images
%%PORTDOCS%%@@dirrm %%DOCSDIR%%/man
%%PORTDOCS%%@@dirrm %%DOCSDIR%%/seq_install
%%PORTDOCS%%@@dirrm %%DOCSDIR%%
@@dirrmtry %%DATADIR%%
@


1.14
log
@Update biology/ncbi-toolkit to the latest release.
Quoting from www.ncbi.nlm.nih.gov/blast/blast_whatsnew.shtml
Major changes include:
 blastall now uses the new engine by default, resulting
 in significant performance improvements and enabling
 query concatenation for all program types.

PR:		ports/98570
Submitted by:	maintainer
Approved by:	lawrance (mentor, implict)
@
text
@a1 1
bin/blast
d9 1
d15 1
a26 2
bin/getseq
bin/getfeat
d36 7
a45 1
bin/netentcf
d56 1
d63 1
a77 1
include/ncbi/connect/ncbi_service_misc.h
d82 1
d100 2
d137 1
d143 1
d153 1
d162 1
d271 2
d293 2
d368 1
d375 1
d391 1
d542 1
a607 1
%%PORTDOCS%%%%DOCSDIR%%/blast/update_blastdb.pl
a641 2
%%PORTDOCS%%%%DOCSDIR%%/man/asn2ff.1
%%PORTDOCS%%%%DOCSDIR%%/man/Nentrez.1
d643 1
d645 2
d648 1
d652 1
d656 1
d662 1
a665 1
%%PORTDOCS%%%%DOCSDIR%%/man/entrcmd.1
d675 1
d677 1
a677 1
%%PORTDOCS%%%%DOCSDIR%%/man/getfeat.1
d683 1
d687 1
a687 1
%%PORTDOCS%%%%DOCSDIR%%/man/netentcf.1
d689 1
d691 2
d694 2
d736 3
a738 3
%%DATADIR%%/16Score.nhr
%%DATADIR%%/16Score.nin
%%DATADIR%%/16Score.nsq
d740 1
d743 7
d755 1
d768 3
d773 3
d786 5
d796 1
d806 2
@


1.13
log
@Replace ugly "@@unexec rmdir %D... 2>/dev/null || true" with @@dirrmtry

Approved by:    krion@@
PR:             ports/88711 (related)
@
text
@d61 1
d63 1
d443 1
d491 1
a625 1

d705 3
@


1.12
log
@- Update to 2005.12.06

PR:		ports/91714
Submitted by:	Fernan Aguero <fernan@@iib.unsam.edu.ar> (maintainer)
@
text
@d762 1
a762 1
@@unexec rmdir %D/%%DATADIR%% 2>/dev/null || true
@


1.11
log
@- Update to 20050605

PR:		ports/87266
Submitted by:	maintainer
@
text
@d17 1
d20 1
d41 1
a77 1
include/ncbi/Mode_condition.h
a80 1
include/ncbi/NRdefs.h
d184 4
d265 1
a321 1
include/ncbi/ni_asn.h
a322 1
include/ncbi/ni_encr.h
a325 2
include/ncbi/ni_list.h
include/ncbi/ni_msg.h
d328 1
a328 1
include/ncbi/nlm_numerics.h
d374 1
a396 1
include/ncbi/re_newton.h
d398 1
d443 1
d536 1
d582 2
a584 2
%%PORTDOCS%%%%DOCSDIR%%/blastdb.txt
%%PORTDOCS%%%%DOCSDIR%%/blastftp.txt
d592 11
d604 15
a618 23
%%PORTDOCS%%%%DOCSDIR%%/images/seqn01.png
%%PORTDOCS%%%%DOCSDIR%%/images/seqn02.png
%%PORTDOCS%%%%DOCSDIR%%/images/seqn03.png
%%PORTDOCS%%%%DOCSDIR%%/images/seqn04.png
%%PORTDOCS%%%%DOCSDIR%%/images/seqn05.png
%%PORTDOCS%%%%DOCSDIR%%/images/seqn06.png
%%PORTDOCS%%%%DOCSDIR%%/images/seqn07.png
%%PORTDOCS%%%%DOCSDIR%%/images/seqn08.png
%%PORTDOCS%%%%DOCSDIR%%/images/seqn09.png
%%PORTDOCS%%%%DOCSDIR%%/images/seqn10.png
%%PORTDOCS%%%%DOCSDIR%%/images/seqn11.png
%%PORTDOCS%%%%DOCSDIR%%/images/seqn12.png
%%PORTDOCS%%%%DOCSDIR%%/images/seqn13.png
%%PORTDOCS%%%%DOCSDIR%%/images/seqn14.png
%%PORTDOCS%%%%DOCSDIR%%/images/seqn15.png
%%PORTDOCS%%%%DOCSDIR%%/images/seqn16.png
%%PORTDOCS%%%%DOCSDIR%%/images/seqn17.png
%%PORTDOCS%%%%DOCSDIR%%/images/seqn18.png
%%PORTDOCS%%%%DOCSDIR%%/images/seqn19.png
%%PORTDOCS%%%%DOCSDIR%%/images/seqn20.png
%%PORTDOCS%%%%DOCSDIR%%/images/seqn21.png
%%PORTDOCS%%%%DOCSDIR%%/images/seqn22.png
%%PORTDOCS%%%%DOCSDIR%%/man/blastclust.1
d622 1
a622 1
%%PORTDOCS%%%%DOCSDIR%%/man/asn2ff.1
d631 1
a641 1
%%PORTDOCS%%%%DOCSDIR%%/man/udv.1
d647 1
a650 1
%%PORTDOCS%%%%DOCSDIR%%/man/getpub.1
d662 1
d724 6
d762 1
a762 1
@@dirrm %%DATADIR%%
@


1.10
log
@- Update to 2.2.10 from 20041020
- Transfer maintainership

PR:		ports/67735
Submitted by:	Fernan Aguero <fernan@@iib.unsam.edu.ar> (maintainer)
Approved by:	old maintainer indirectly in
http://lists.freebsd.org/pipermail/freebsd-ports-bugs/2004-June/035351.html
@
text
@d42 1
d53 1
d66 1
d70 1
d75 1
d79 1
d117 1
a201 1
include/ncbi/echo_asn.h
d203 1
a281 2
include/ncbi/ncbibuf.h
include/ncbi/ncbicli.h
a300 1
include/ncbi/ncbisock.h
a306 1
include/ncbi/ncbiurl.h
d326 1
d337 1
d339 1
d394 1
d570 1
d576 2
d586 1
@


1.9
log
@- Update to 2004.06.16

Inspired by:	ports/72726
Approved by:	maintainer timeout (2 weeks)
@
text
@d1 14
a14 2
bin/Nentrez
bin/Psequin
a18 6
bin/asntool
bin/blastall
bin/blastcl3
bin/blastclust
bin/blastpgp
bin/cdscan
d20 1
a20 5
bin/copymat
bin/ddv
bin/demo_regexp
bin/demo_regexp_grep
bin/dosimple
a21 2
bin/entrez2
bin/errhdr
a22 1
bin/fastacmd
d24 1
a24 1
bin/formatdb
d28 1
a28 1
bin/getseq
a30 1
bin/impala
a31 1
bin/makemat
d33 5
a37 2
bin/megablast
bin/ncbisort
a38 7
bin/rpsblast
bin/seedtop
bin/seqtest
bin/tbl2asn
bin/testcore
bin/testobj
bin/testval
d40 29
a68 1
bin/vecscreen
d133 1
d146 1
a156 1
include/ncbi/cddsrv.h
d165 1
a175 30
include/ncbi/codon.h
include/ncbi/connect/connect_export.h
include/ncbi/connect/ncbi_ansi_ext.h
include/ncbi/connect/ncbi_buffer.h
include/ncbi/connect/ncbi_comm.h
include/ncbi/connect/ncbi_config.h
include/ncbi/connect/ncbi_connection.h
include/ncbi/connect/ncbi_connector.h
include/ncbi/connect/ncbi_connutil.h
include/ncbi/connect/ncbi_core.h
include/ncbi/connect/ncbi_core_c.h
include/ncbi/connect/ncbi_dispd.h
include/ncbi/connect/ncbi_file_connector.h
include/ncbi/connect/ncbi_heapmgr.h
include/ncbi/connect/ncbi_host_info.h
include/ncbi/connect/ncbi_host_infop.h
include/ncbi/connect/ncbi_http_connector.h
include/ncbi/connect/ncbi_lbsmd.h
include/ncbi/connect/ncbi_memory_connector.h
include/ncbi/connect/ncbi_priv.h
include/ncbi/connect/ncbi_sendmail.h
include/ncbi/connect/ncbi_server_info.h
include/ncbi/connect/ncbi_server_infop.h
include/ncbi/connect/ncbi_service.h
include/ncbi/connect/ncbi_service_connector.h
include/ncbi/connect/ncbi_servicep.h
include/ncbi/connect/ncbi_socket.h
include/ncbi/connect/ncbi_socket_connector.h
include/ncbi/connect/ncbi_types.h
include/ncbi/connect/ncbi_util.h
d216 1
a221 1
include/ncbi/id1.h
a238 1
include/ncbi/lbapi.h
d363 1
d447 1
d450 1
a456 1
include/ncbi/terr.h
d499 1
a517 1
include/ncbi/vsm.h
a520 2
include/ncbi/wrpsb.h
include/ncbi/wrpsbtool.h
d552 2
a555 1
%%PORTDOCS%%%%DOCSDIR%%/blast/blastclust.html
a558 1
%%PORTDOCS%%%%DOCSDIR%%/blast/bl2seq.html
d562 1
d599 3
a601 2
%%PORTDOCS%%%%DOCSDIR%%/man/asndhuff.1
%%PORTDOCS%%%%DOCSDIR%%/man/asntool.1
d606 4
a610 1
%%PORTDOCS%%%%DOCSDIR%%/man/blastclust.1
a612 2
%%PORTDOCS%%%%DOCSDIR%%/man/blast.1
%%PORTDOCS%%%%DOCSDIR%%/man/bl2seq.1
d614 1
d621 3
a624 1
%%PORTDOCS%%%%DOCSDIR%%/man/fa2htgs.1
a632 1
%%PORTDOCS%%%%DOCSDIR%%/man/checksub.1
a638 1
%%PORTDOCS%%%%DOCSDIR%%/man/Nentrez.1
a639 1
%%PORTDOCS%%%%DOCSDIR%%/man/Psequin.1
a642 2
%%PORTDOCS%%%%DOCSDIR%%/man/udv.1
%%PORTDOCS%%%%DOCSDIR%%/man/vecscreen.1
d645 2
d648 1
a648 1
%%PORTDOCS%%%%DOCSDIR%%/seq_install/ftp_example.css
a653 1
%%PORTDOCS%%%%DOCSDIR%%/seq_install/Makefile
a654 1
%%PORTDOCS%%%%DOCSDIR%%/seq_install/sequin-icon-win.gif
a657 1
%%PORTDOCS%%%%DOCSDIR%%/seq_install/seq_ftp_download.css
d663 1
d674 1
a674 1
%%PORTDOCS%%%%DOCSDIR%%/seq_install/sniff.js
d677 1
a678 1
%%PORTDOCS%%%%DOCSDIR%%/seq_install/win-ie.css
d727 7
a733 1
@@dirrm %%DATADIR%%
a734 4
%%PORTDOCS%%@@dirrm %%DOCSDIR%%/man
%%PORTDOCS%%@@dirrm %%DOCSDIR%%/images
%%PORTDOCS%%@@dirrm %%DOCSDIR%%/fa2htgs
%%PORTDOCS%%@@dirrm %%DOCSDIR%%/blast
d736 1
a736 3
@@dirrm lib/ncbi
@@dirrm include/ncbi/connect
@@dirrm include/ncbi
@


1.8
log
@Cosmetic fix: use %%DOCSDIR%% macro.
No functionally changes.

Submitted by:	Oleg Karachevtsev <ok@@etrust.ru>
A part of PR:	57992
@
text
@a0 48
%%PORTDOCS%%%%DOCSDIR%%/FAQ.txt
%%PORTDOCS%%%%DOCSDIR%%/README-qm
%%PORTDOCS%%%%DOCSDIR%%/README.asn2xml
%%PORTDOCS%%%%DOCSDIR%%/README.bcl
%%PORTDOCS%%%%DOCSDIR%%/README.bls
%%PORTDOCS%%%%DOCSDIR%%/README.fastacmd
%%PORTDOCS%%%%DOCSDIR%%/README.formatdb
%%PORTDOCS%%%%DOCSDIR%%/README.imp
%%PORTDOCS%%%%DOCSDIR%%/README.mbl
%%PORTDOCS%%%%DOCSDIR%%/README.nbl
%%PORTDOCS%%%%DOCSDIR%%/README.pbl
%%PORTDOCS%%%%DOCSDIR%%/README.rps
%%PORTDOCS%%%%DOCSDIR%%/README.sdk
%%PORTDOCS%%%%DOCSDIR%%/asn2gb.txt
%%PORTDOCS%%%%DOCSDIR%%/asn2gph.txt
%%PORTDOCS%%%%DOCSDIR%%/dispatcher.html
%%PORTDOCS%%%%DOCSDIR%%/fa2htgs/README
%%PORTDOCS%%%%DOCSDIR%%/fa2htgs/updateHtgsDoc
%%PORTDOCS%%%%DOCSDIR%%/firedialog.gif
%%PORTDOCS%%%%DOCSDIR%%/firewall.html
%%PORTDOCS%%%%DOCSDIR%%/fwd_check.sh
%%PORTDOCS%%%%DOCSDIR%%/images/ncbi_sequin.css
%%PORTDOCS%%%%DOCSDIR%%/images/seqn01.gif
%%PORTDOCS%%%%DOCSDIR%%/images/seqn02.gif
%%PORTDOCS%%%%DOCSDIR%%/images/seqn03.gif
%%PORTDOCS%%%%DOCSDIR%%/images/seqn04.gif
%%PORTDOCS%%%%DOCSDIR%%/images/seqn05.gif
%%PORTDOCS%%%%DOCSDIR%%/images/seqn06.gif
%%PORTDOCS%%%%DOCSDIR%%/images/seqn07.gif
%%PORTDOCS%%%%DOCSDIR%%/images/seqn08.gif
%%PORTDOCS%%%%DOCSDIR%%/images/seqn09.gif
%%PORTDOCS%%%%DOCSDIR%%/images/seqn10.gif
%%PORTDOCS%%%%DOCSDIR%%/images/seqn11.gif
%%PORTDOCS%%%%DOCSDIR%%/images/seqn12.gif
%%PORTDOCS%%%%DOCSDIR%%/images/seqn13.gif
%%PORTDOCS%%%%DOCSDIR%%/images/seqn14.gif
%%PORTDOCS%%%%DOCSDIR%%/images/seqn15.gif
%%PORTDOCS%%%%DOCSDIR%%/images/seqn16.gif
%%PORTDOCS%%%%DOCSDIR%%/images/seqn17.gif
%%PORTDOCS%%%%DOCSDIR%%/images/seqn18.gif
%%PORTDOCS%%%%DOCSDIR%%/images/seqn19.gif
%%PORTDOCS%%%%DOCSDIR%%/images/seqn20.gif
%%PORTDOCS%%%%DOCSDIR%%/images/seqn21.gif
%%PORTDOCS%%%%DOCSDIR%%/images/seqn22.gif
%%PORTDOCS%%%%DOCSDIR%%/ncbixml.txt
%%PORTDOCS%%%%DOCSDIR%%/sdk.doc
%%PORTDOCS%%%%DOCSDIR%%/sequin.htm
%%PORTDOCS%%%%DOCSDIR%%/tbl2asn.txt
a24 1
bin/fmerge
a47 50
lib/ncbi/libddvlib.a
lib/ncbi/libncbi.a
lib/ncbi/libncbiCacc.a
lib/ncbi/libncbiNacc.a
lib/ncbi/libncbiacc.a
lib/ncbi/libncbicdr.a
lib/ncbi/libncbicn3d.a
lib/ncbi/libncbidesk.a
lib/ncbi/libncbiid1.a
lib/ncbi/libncbimla.a
lib/ncbi/libncbimmdb.a
lib/ncbi/libncbiobj.a
lib/ncbi/libncbitool.a
lib/ncbi/libncbitxc2.a
lib/ncbi/libnetblast.a
lib/ncbi/libnetcli.a
lib/ncbi/libnetentr.a
lib/ncbi/libregexp.a
lib/ncbi/libvibgif.a
lib/ncbi/libvibnet.a
lib/ncbi/libvibrant.a
include/ncbi/connect/connect_export.h
include/ncbi/connect/ncbi_ansi_ext.h
include/ncbi/connect/ncbi_buffer.h
include/ncbi/connect/ncbi_comm.h
include/ncbi/connect/ncbi_config.h
include/ncbi/connect/ncbi_connection.h
include/ncbi/connect/ncbi_connector.h
include/ncbi/connect/ncbi_connutil.h
include/ncbi/connect/ncbi_core.h
include/ncbi/connect/ncbi_core_c.h
include/ncbi/connect/ncbi_dispd.h
include/ncbi/connect/ncbi_file_connector.h
include/ncbi/connect/ncbi_heapmgr.h
include/ncbi/connect/ncbi_host_info.h
include/ncbi/connect/ncbi_host_infop.h
include/ncbi/connect/ncbi_http_connector.h
include/ncbi/connect/ncbi_lbsmd.h
include/ncbi/connect/ncbi_memory_connector.h
include/ncbi/connect/ncbi_priv.h
include/ncbi/connect/ncbi_sendmail.h
include/ncbi/connect/ncbi_server_info.h
include/ncbi/connect/ncbi_server_infop.h
include/ncbi/connect/ncbi_service.h
include/ncbi/connect/ncbi_service_connector.h
include/ncbi/connect/ncbi_servicep.h
include/ncbi/connect/ncbi_socket.h
include/ncbi/connect/ncbi_socket_connector.h
include/ncbi/connect/ncbi_types.h
include/ncbi/connect/ncbi_util.h
d79 1
a84 5
include/ncbi/asngbseq.h
include/ncbi/asntseq.h
include/ncbi/blast.h
include/ncbi/blastconcat.h
include/ncbi/blastconcatdef.h
d92 1
d95 1
d113 1
d117 3
d132 1
d154 29
a197 1
include/ncbi/dust.h
d200 1
d232 4
d347 1
d365 1
d367 1
d395 1
a396 1
include/ncbi/readdb.h
d418 1
d434 1
d441 1
a451 1
include/ncbi/terr.h
d462 1
a503 1
include/ncbi/vsm.h
d516 1
d523 1
d529 1
d531 206
a736 49
share/ncbi-toolkit/BLOSUM45
share/ncbi-toolkit/BLOSUM62
share/ncbi-toolkit/BLOSUM80
share/ncbi-toolkit/ContactPotential
share/ncbi-toolkit/KSat.flt
share/ncbi-toolkit/KSchoth.flt
share/ncbi-toolkit/KSesigc.mat
share/ncbi-toolkit/KSesigl.mat
share/ncbi-toolkit/KSgc.flt
share/ncbi-toolkit/KShopp.flt
share/ncbi-toolkit/KSkyte.flt
share/ncbi-toolkit/KSmtidk.mat
share/ncbi-toolkit/KSmtk.mat
share/ncbi-toolkit/KSnsigc.mat
share/ncbi-toolkit/KSnsigl.mat
share/ncbi-toolkit/KSpcc.mat
share/ncbi-toolkit/KSpsigc.mat
share/ncbi-toolkit/KSpsigl.mat
share/ncbi-toolkit/KSpur.flt
share/ncbi-toolkit/KSpyr.flt
share/ncbi-toolkit/PAM30
share/ncbi-toolkit/PAM70
share/ncbi-toolkit/asn2ff.prt
share/ncbi-toolkit/blast.prt
share/ncbi-toolkit/bstdt.prt
share/ncbi-toolkit/bstdt.val
share/ncbi-toolkit/featdef.prt
share/ncbi-toolkit/featdef.val
share/ncbi-toolkit/gc.prt
share/ncbi-toolkit/gc.val
share/ncbi-toolkit/humrep.fsa
share/ncbi-toolkit/lineages.txt
share/ncbi-toolkit/makerpt.prt
share/ncbi-toolkit/ncbiendo.dat
share/ncbi-toolkit/ncbipnam.dat
share/ncbi-toolkit/ncbipros.dat
share/ncbi-toolkit/ncbiren.dat
share/ncbi-toolkit/ncbirnam.dat
share/ncbi-toolkit/objprt.prt
share/ncbi-toolkit/pubkey.enc
share/ncbi-toolkit/seqcode.prt
share/ncbi-toolkit/seqcode.val
share/ncbi-toolkit/sequin.hlp
share/ncbi-toolkit/sgmlbb.ent
share/ncbi-toolkit/taxlist.txt
@@dirrm include/ncbi/connect
@@dirrm include/ncbi
@@dirrm lib/ncbi
@@dirrm share/ncbi-toolkit
d739 1
d741 3
@


1.7
log
@Update to 2003.04.21

PR:		51709
Submitted by:	Tony Maher <tonymaher@@optushome.com.au>
@
text
@d1 48
a48 48
%%PORTDOCS%%share/doc/ncbi-toolkit/FAQ.txt
%%PORTDOCS%%share/doc/ncbi-toolkit/README-qm
%%PORTDOCS%%share/doc/ncbi-toolkit/README.asn2xml
%%PORTDOCS%%share/doc/ncbi-toolkit/README.bcl
%%PORTDOCS%%share/doc/ncbi-toolkit/README.bls
%%PORTDOCS%%share/doc/ncbi-toolkit/README.fastacmd
%%PORTDOCS%%share/doc/ncbi-toolkit/README.formatdb
%%PORTDOCS%%share/doc/ncbi-toolkit/README.imp
%%PORTDOCS%%share/doc/ncbi-toolkit/README.mbl
%%PORTDOCS%%share/doc/ncbi-toolkit/README.nbl
%%PORTDOCS%%share/doc/ncbi-toolkit/README.pbl
%%PORTDOCS%%share/doc/ncbi-toolkit/README.rps
%%PORTDOCS%%share/doc/ncbi-toolkit/README.sdk
%%PORTDOCS%%share/doc/ncbi-toolkit/asn2gb.txt
%%PORTDOCS%%share/doc/ncbi-toolkit/asn2gph.txt
%%PORTDOCS%%share/doc/ncbi-toolkit/dispatcher.html
%%PORTDOCS%%share/doc/ncbi-toolkit/fa2htgs/README
%%PORTDOCS%%share/doc/ncbi-toolkit/fa2htgs/updateHtgsDoc
%%PORTDOCS%%share/doc/ncbi-toolkit/firedialog.gif
%%PORTDOCS%%share/doc/ncbi-toolkit/firewall.html
%%PORTDOCS%%share/doc/ncbi-toolkit/fwd_check.sh
%%PORTDOCS%%share/doc/ncbi-toolkit/images/ncbi_sequin.css
%%PORTDOCS%%share/doc/ncbi-toolkit/images/seqn01.gif
%%PORTDOCS%%share/doc/ncbi-toolkit/images/seqn02.gif
%%PORTDOCS%%share/doc/ncbi-toolkit/images/seqn03.gif
%%PORTDOCS%%share/doc/ncbi-toolkit/images/seqn04.gif
%%PORTDOCS%%share/doc/ncbi-toolkit/images/seqn05.gif
%%PORTDOCS%%share/doc/ncbi-toolkit/images/seqn06.gif
%%PORTDOCS%%share/doc/ncbi-toolkit/images/seqn07.gif
%%PORTDOCS%%share/doc/ncbi-toolkit/images/seqn08.gif
%%PORTDOCS%%share/doc/ncbi-toolkit/images/seqn09.gif
%%PORTDOCS%%share/doc/ncbi-toolkit/images/seqn10.gif
%%PORTDOCS%%share/doc/ncbi-toolkit/images/seqn11.gif
%%PORTDOCS%%share/doc/ncbi-toolkit/images/seqn12.gif
%%PORTDOCS%%share/doc/ncbi-toolkit/images/seqn13.gif
%%PORTDOCS%%share/doc/ncbi-toolkit/images/seqn14.gif
%%PORTDOCS%%share/doc/ncbi-toolkit/images/seqn15.gif
%%PORTDOCS%%share/doc/ncbi-toolkit/images/seqn16.gif
%%PORTDOCS%%share/doc/ncbi-toolkit/images/seqn17.gif
%%PORTDOCS%%share/doc/ncbi-toolkit/images/seqn18.gif
%%PORTDOCS%%share/doc/ncbi-toolkit/images/seqn19.gif
%%PORTDOCS%%share/doc/ncbi-toolkit/images/seqn20.gif
%%PORTDOCS%%share/doc/ncbi-toolkit/images/seqn21.gif
%%PORTDOCS%%share/doc/ncbi-toolkit/images/seqn22.gif
%%PORTDOCS%%share/doc/ncbi-toolkit/ncbixml.txt
%%PORTDOCS%%share/doc/ncbi-toolkit/sdk.doc
%%PORTDOCS%%share/doc/ncbi-toolkit/sequin.htm
%%PORTDOCS%%share/doc/ncbi-toolkit/tbl2asn.txt
d635 3
a637 3
%%PORTDOCS%%@@dirrm share/doc/ncbi-toolkit/images
%%PORTDOCS%%@@dirrm share/doc/ncbi-toolkit/fa2htgs
%%PORTDOCS%%@@dirrm share/doc/ncbi-toolkit
@


1.6
log
@upgrade to 20020426

PR:		39357
Submitted by:	maintainer
@
text
@d2 1
d6 1
d14 3
a20 1
%%PORTDOCS%%share/doc/ncbi-toolkit/firewall.txt
d48 1
d52 1
a55 2
bin/bl2seq
bin/blast.REAL
d64 2
d68 1
d114 1
d118 1
d127 2
d131 2
d134 1
a142 2
include/ncbi/connect/ncbi_servicep_dispd.h
include/ncbi/connect/ncbi_servicep_lbsmd.h
d147 7
d183 2
d186 2
d408 1
d431 1
d435 4
d489 1
a584 1
include/ncbi/wwwblast.h
@


1.5
log
@Update to 2001.12.20

PR:		35203
Submitted by:	maintainer
@
text
@d40 1
a45 1
bin/asn2fast
d90 1
a105 1
lib/ncbi/libnetcli_.a
d113 1
d121 1
@


1.4
log
@- Add installation of include files
- Bump PORTREVISION

PR:		30660
Submitted by:	Tony Maher <tonym@@biolateral.com.au> (MAINTAINER)
@
text
@d47 1
a119 2
include/ncbi/connect/ncbi_lbsm.h
include/ncbi/connect/ncbi_lbsm_ipc.h
d123 1
d131 1
d145 1
d147 2
d158 3
d212 1
d248 1
d277 3
d290 1
a300 1
include/ncbi/mbutils.h
d318 1
d377 1
d467 1
d555 45
d603 1
@


1.3
log
@Update to version 2001.04.03; add installation of some documentation.

Approved by:	MAINTAINER
@
text
@d109 433
@


1.2
log
@Updated to new version.  That is the pits, the day after it becomes
a port they release a new version.  This is a new version, w/o a number.

PR:		22522
Submitted by:	Tony Maher <tonym@@dt.home> MAINTAINER
@
text
@d1 42
d90 3
d94 3
d98 3
d102 3
a105 4
lib/ncbi/libncbiCacc.a
lib/ncbi/libncbicn3d.a
lib/ncbi/libncbimmdb.a
lib/ncbi/libnetblast.a
a106 4
lib/ncbi/libncbiNacc.a
lib/ncbi/libncbidesk.a
lib/ncbi/libncbiobj.a
lib/ncbi/libnetcli.a
a107 4
lib/ncbi/libncbiacc.a
lib/ncbi/libncbiid1.a
lib/ncbi/libncbitool.a
lib/ncbi/libnetcli_.a
d109 4
a112 2
@@unexec rmdir %D/lib/ncbi
@@unexec rm -rf %D/include/ncbi
@


1.1
log
@New Port: biology/ncbi-toolkit
National Center for Biotechnology Information (NCBI) Development Toolkit.

PR:		22388
Submitted by:	Tony Maher <tony.maher@@ebioinformatics.com>
@
text
@a0 1
bin/Cn3Dv3d
@

