head	1.4;
access;
symbols
	RELEASE_8_3_0:1.4
	RELEASE_9_0_0:1.2
	RELEASE_7_4_0:1.2
	RELEASE_8_2_0:1.2
	RELEASE_6_EOL:1.2
	RELEASE_8_1_0:1.1
	RELEASE_7_3_0:1.1
	RELEASE_8_0_0:1.1;
locks; strict;
comment	@# @;


1.4
date	2012.02.11.02.04.41;	author sunpoet;	state Exp;
branches;
next	1.3;

1.3
date	2012.02.09.01.23.59;	author wen;	state Exp;
branches;
next	1.2;

1.2
date	2010.09.07.07.15.24;	author wen;	state Exp;
branches;
next	1.1;

1.1
date	2009.08.22.20.39.51;	author miwi;	state Exp;
branches;
next	;


desc
@@


1.4
log
@- Update to 0.78
- Sort TEST_DEPENDS, MAN1, MAN3 and PLIST

Changes:	http://search.cpan.org/dist/Bio-NEXUS/doc/changes.txt
@
text
@bin/nex2text_tree.pl
bin/nexplot.pl
bin/nextool.pl
%%SITE_PERL%%/Bio/NEXUS.pm
%%SITE_PERL%%/Bio/NEXUS/AssumptionsBlock.pm
%%SITE_PERL%%/Bio/NEXUS/Block.pm
%%SITE_PERL%%/Bio/NEXUS/CharactersBlock.pm
%%SITE_PERL%%/Bio/NEXUS/CodonsBlock.pm
%%SITE_PERL%%/Bio/NEXUS/DataBlock.pm
%%SITE_PERL%%/Bio/NEXUS/DistancesBlock.pm
%%SITE_PERL%%/Bio/NEXUS/Functions.pm
%%SITE_PERL%%/Bio/NEXUS/HistoryBlock.pm
%%SITE_PERL%%/Bio/NEXUS/Matrix.pm
%%SITE_PERL%%/Bio/NEXUS/NHXCmd.pm
%%SITE_PERL%%/Bio/NEXUS/Node.pm
%%SITE_PERL%%/Bio/NEXUS/NotesBlock.pm
%%SITE_PERL%%/Bio/NEXUS/SetsBlock.pm
%%SITE_PERL%%/Bio/NEXUS/SpanBlock.pm
%%SITE_PERL%%/Bio/NEXUS/TaxUnit.pm
%%SITE_PERL%%/Bio/NEXUS/TaxUnitSet.pm
%%SITE_PERL%%/Bio/NEXUS/TaxaBlock.pm
%%SITE_PERL%%/Bio/NEXUS/Tools/GraphicsParams.pm
%%SITE_PERL%%/Bio/NEXUS/Tools/NexModifier.pm
%%SITE_PERL%%/Bio/NEXUS/Tools/NexPlotter.pm
%%SITE_PERL%%/Bio/NEXUS/Tree.pm
%%SITE_PERL%%/Bio/NEXUS/TreesBlock.pm
%%SITE_PERL%%/Bio/NEXUS/UnalignedBlock.pm
%%SITE_PERL%%/Bio/NEXUS/UnknownBlock.pm
%%SITE_PERL%%/Bio/NEXUS/Util/Exceptions.pm
%%SITE_PERL%%/Bio/NEXUS/Util/Logger.pm
%%SITE_PERL%%/Bio/NEXUS/WeightSet.pm
%%SITE_PERL%%/%%PERL_ARCH%%/auto/Bio/NEXUS/.packlist
@@dirrm %%SITE_PERL%%/%%PERL_ARCH%%/auto/Bio/NEXUS
@@dirrmtry %%SITE_PERL%%/%%PERL_ARCH%%/auto/Bio
@@dirrm %%SITE_PERL%%/Bio/NEXUS/Util
@@dirrm %%SITE_PERL%%/Bio/NEXUS/Tools
@@dirrm %%SITE_PERL%%/Bio/NEXUS
@@dirrmtry %%SITE_PERL%%/Bio
@


1.3
log
@- Update to 0.77
@
text
@d5 4
a8 1
%%SITE_PERL%%/Bio/NEXUS/._UnalignedBlock.pm
d10 6
a15 1
%%SITE_PERL%%/Bio/NEXUS/CodonsBlock.pm
d17 2
a18 2
%%SITE_PERL%%/Bio/NEXUS/NHXCmd.pm
%%SITE_PERL%%/Bio/NEXUS/HistoryBlock.pm
a19 3
%%SITE_PERL%%/Bio/NEXUS/CharactersBlock.pm
%%SITE_PERL%%/Bio/NEXUS/SpanBlock.pm
%%SITE_PERL%%/Bio/NEXUS/UnalignedBlock.pm
d21 4
a24 4
%%SITE_PERL%%/Bio/NEXUS/DistancesBlock.pm
%%SITE_PERL%%/Bio/NEXUS/UnknownBlock.pm
%%SITE_PERL%%/Bio/NEXUS/Node.pm
%%SITE_PERL%%/Bio/NEXUS/Matrix.pm
a25 3
%%SITE_PERL%%/Bio/NEXUS/WeightSet.pm
%%SITE_PERL%%/Bio/NEXUS/SetsBlock.pm
%%SITE_PERL%%/Bio/NEXUS/TaxaBlock.pm
d27 2
a28 3
%%SITE_PERL%%/Bio/NEXUS/AssumptionsBlock.pm
%%SITE_PERL%%/Bio/NEXUS/Block.pm
%%SITE_PERL%%/Bio/NEXUS/Functions.pm
d31 1
a31 3
%%SITE_PERL%%/Bio/NEXUS/Tools/NexModifier.pm
%%SITE_PERL%%/Bio/NEXUS/Tools/NexPlotter.pm
%%SITE_PERL%%/Bio/NEXUS/Tools/GraphicsParams.pm
d33 1
a33 1
@@dirrmtry %%SITE_PERL%%/%%PERL_ARCH%%/auto/Bio/NEXUS
d35 3
a37 3
@@dirrmtry %%SITE_PERL%%/Bio/NEXUS/Tools
@@dirrmtry %%SITE_PERL%%/Bio/NEXUS/Util
@@dirrmtry %%SITE_PERL%%/Bio/NEXUS
@


1.2
log
@- Update to 0.75
- Reset maintainer to perl@@
@
text
@d5 1
@


1.1
log
@Bio::NEXUS package provides an object-oriented, Perl-based
applications programming interface (API) to the NEXUS file
format of Maddison, et al., 1997 (Syst. Biol. 46:590-621).
NEXUS is a powerful and extensible format designed for use
in evolutionary analysis, including the analysis of molecular
sequence data as well as classical morphological and life-history
data. NEXUS is the input or output format for software such as
PAUP*, MacClade, Mesquite, SIMMAP, MrBayes, Nexplorer, and
so on.  This package also contains the demonstration applications
nexplot.pl (plot character data with a tree) and nextool.pl
(allowing programmatic editing, e.g., selecting particular
clades or subsets of data).

WWW: http://search.cpan.org/dist/Bio-NEXUS/

PR:		ports/137983
Submitted by:	Wen Heping <wenheping at gmail.com>
@
text
@a5 1
%%SITE_PERL%%/Bio/NEXUS/._Functions.pm
d29 3
d35 1
@

