head	1.6;
access;
symbols
	RELEASE_7_2_0:1.5
	RELEASE_7_1_0:1.5
	RELEASE_6_4_0:1.5
	RELEASE_5_EOL:1.4
	RELEASE_7_0_0:1.4
	RELEASE_6_3_0:1.4
	PRE_XORG_7:1.4
	RELEASE_4_EOL:1.4
	RELEASE_6_2_0:1.4
	RELEASE_6_1_0:1.4
	RELEASE_5_5_0:1.4
	RELEASE_5_1_0:1.1
	RELEASE_4_8_0:1.1
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	RELEASE_4_6_2:1.1
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locks; strict;
comment	@# @;


1.6
date	2009.06.05.20.38.34;	author miwi;	state dead;
branches;
next	1.5;

1.5
date	2008.07.06.23.27.12;	author lippe;	state Exp;
branches;
next	1.4;

1.4
date	2006.01.22.01.25.23;	author edwin;	state Exp;
branches;
next	1.3;

1.3
date	2005.12.02.21.40.11;	author barner;	state Exp;
branches;
next	1.2;

1.2
date	2003.08.08.03.29.15;	author kris;	state dead;
branches;
next	1.1;

1.1
date	2001.08.14.09.36.33;	author wjv;	state Exp;
branches;
next	;


desc
@@


1.6
log
@2009-05-31 biology/p5-bioperl-devel: no longer under development
2009-05-31 biology/p5-bioperl-run-devel: no longer under development
2009-06-01 net-p2p/deluge05: use net-p2p/deluge instead
2009-06-03 textproc/gmat: failed to build for a long time, no maintainer and apparently no users either
@
text
@bin/bp_sreformat.pl
bin/bp_contig_draw.pl
bin/bp_tree2pag.pl
bin/bp_meta_gff.pl
bin/bp_flanks.pl
bin/bp_heterogeneity_test.pl
bin/bp_feature_draw.pl
bin/bp_biogetseq.pl
bin/bp_genbank2gff.pl
bin/bp_seqfeature_load.pl
bin/bp_seq_length.pl
bin/bp_frend.pl
bin/bp_fastam9_to_table.pl
bin/bp_taxid4species.pl
bin/bp_glyphs1-demo.pl
bin/bp_blast2tree.pl
bin/bp_gccalc.pl
bin/bp_seqret.pl
bin/bp_query_entrez_taxa.pl
bin/bp_glyphs2-demo.pl
bin/bp_search2alnblocks.pl
bin/bp_taxonomy2tree.pl
bin/bp_mask_by_search.pl
bin/bp_aacomp.pl
bin/bp_composite_LD.pl
bin/bp_biblio.pl
bin/bp_process_wormbase.pl
bin/bp_embl2picture.pl
bin/bp_local_taxonomydb_query.pl
bin/bp_genbank2gff3.pl
bin/bp_search2BSML.pl
bin/bp_seqconvert.pl
bin/bp_parse_hmmsearch.pl
bin/bp_nexus2nh.pl
bin/bp_nrdb.pl
bin/bp_split_seq.pl
bin/bp_filter_search.pl
bin/bp_generate_histogram.pl
bin/bp_load_gff.pl
bin/bp_fetch.pl
bin/bp_mutate.pl
bin/bp_process_sgd.pl
bin/bp_index.pl
bin/bp_dbsplit.pl
bin/bp_oligo_count.pl
bin/bp_process_gadfly.pl
bin/bp_hmmer_to_table.pl
bin/bp_bulk_load_gff.pl
bin/bp_biofetch_genbank_proxy.pl
bin/bp_extract_feature_seq.pl
bin/bp_search2gff.pl
bin/bp_unflatten_seq.pl
bin/bp_make_mrna_protein.pl
bin/bp_mrtrans.pl
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bin/bp_chaos_plot.pl
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bin/bp_remote_blast.pl
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bin/bp_translate_seq.pl
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@@dirrm %%SITE_PERL%%/Bio/Tools/Phylo/Phylip
@@dirrm %%SITE_PERL%%/Bio/Tools/Phylo
@@dirrm %%SITE_PERL%%/Bio/Tools/Prediction
@@dirrm %%SITE_PERL%%/Bio/Tools/Primer/Assessor
@@dirrm %%SITE_PERL%%/Bio/Tools/Primer
@@dirrm %%SITE_PERL%%/Bio/Tools/Run
@@dirrm %%SITE_PERL%%/Bio/Tools/SiRNA/Ruleset
@@dirrm %%SITE_PERL%%/Bio/Tools/SiRNA
@@dirrm %%SITE_PERL%%/Bio/Tools/Sim4
@@dirrm %%SITE_PERL%%/Bio/Tools/Spidey
@@dirrm %%SITE_PERL%%/Bio/Tools
@@dirrm %%SITE_PERL%%/Bio/Tree/Draw
@@dirrm %%SITE_PERL%%/Bio/Tree
@@dirrm %%SITE_PERL%%/Bio/TreeIO
@@dirrm %%SITE_PERL%%/Bio/Variation/IO
@@dirrm %%SITE_PERL%%/Bio/Variation
@@dirrmtry %%SITE_PERL%%/Bio
@@dirrmtry %%SITE_PERL%%/%%PERL_ARCH%%/auto/Bio
@@dirrmtry %%SITE_PERL%%/%%PERL_ARCH%%/auto
@@dirrmtry %%SITE_PERL%%/%%PERL_ARCH%%
@@dirrmtry %%SITE_PERL%%
%%PORTDOCS%%@@dirrm %%DOCSDIR%%/doc/Deobfuscator/t
%%PORTDOCS%%@@dirrm %%DOCSDIR%%/doc/Deobfuscator/bin
%%PORTDOCS%%@@dirrm %%DOCSDIR%%/doc/Deobfuscator/cgi-bin
%%PORTDOCS%%@@dirrm %%DOCSDIR%%/doc/Deobfuscator/lib
%%PORTDOCS%%@@dirrm %%DOCSDIR%%/doc/Deobfuscator
%%PORTDOCS%%@@dirrm %%DOCSDIR%%/doc
%%PORTDOCS%%@@dirrm %%DOCSDIR%%
%%PORTEXAMPLES%%@@dirrm %%EXAMPLESDIR%%/root/lib/Bio
%%PORTEXAMPLES%%@@dirrm %%EXAMPLESDIR%%/root/lib
%%PORTEXAMPLES%%@@dirrm %%EXAMPLESDIR%%/root
%%PORTEXAMPLES%%@@dirrm %%EXAMPLESDIR%%/tools
%%PORTEXAMPLES%%@@dirrm %%EXAMPLESDIR%%/tk
%%PORTEXAMPLES%%@@dirrm %%EXAMPLESDIR%%/tree
%%PORTEXAMPLES%%@@dirrm %%EXAMPLESDIR%%/structure
%%PORTEXAMPLES%%@@dirrm %%EXAMPLESDIR%%/sirna
%%PORTEXAMPLES%%@@dirrm %%EXAMPLESDIR%%/searchio
%%PORTEXAMPLES%%@@dirrm %%EXAMPLESDIR%%/db
%%PORTEXAMPLES%%@@dirrm %%EXAMPLESDIR%%/align
%%PORTEXAMPLES%%@@dirrm %%EXAMPLESDIR%%/biblio
%%PORTEXAMPLES%%@@dirrm %%EXAMPLESDIR%%/popgen
%%PORTEXAMPLES%%@@dirrm %%EXAMPLESDIR%%/biographics
%%PORTEXAMPLES%%@@dirrm %%EXAMPLESDIR%%/cluster
%%PORTEXAMPLES%%@@dirrm %%EXAMPLESDIR%%/liveseq
%%PORTEXAMPLES%%@@dirrm %%EXAMPLESDIR%%/contributed
%%PORTEXAMPLES%%@@dirrm %%EXAMPLESDIR%%/Bio-DB-GFF
%%PORTEXAMPLES%%@@dirrm %%EXAMPLESDIR%%
@@dirrm %%DATADIR%%/models
@@dirrm %%DATADIR%%/scripts/taxa
@@dirrm %%DATADIR%%/scripts/seq
@@dirrm %%DATADIR%%/scripts/tree
@@dirrm %%DATADIR%%/scripts/biographics
@@dirrm %%DATADIR%%/scripts/searchio
@@dirrm %%DATADIR%%/scripts/index
@@dirrm %%DATADIR%%/scripts/Bio-SeqFeature-Store
@@dirrm %%DATADIR%%/scripts/biblio
@@dirrm %%DATADIR%%/scripts/Bio-DB-GFF
@@dirrm %%DATADIR%%/scripts/das
@@dirrm %%DATADIR%%/scripts/popgen
@@dirrm %%DATADIR%%/scripts/utilities
@@dirrm %%DATADIR%%/scripts/graphics
@@dirrm %%DATADIR%%/scripts/DB
@@dirrm %%DATADIR%%/scripts/seqstats
@@dirrm %%DATADIR%%/scripts
@@dirrm %%DATADIR%%
@


1.5
log
@- Update to 1.5.2.

PR:		ports/124648
Submitted by:	Mauricio Herrera Cuadra <mauricio@@arareko.net> (maintainer)
Reviewed by:	lippe
Approved by:	gabor (mentor, implicit)
@
text
@@


1.4
log
@Replace ugly "@@unexec rmdir %D... 2>/dev/null || true" with @@dirrmtry

Approved by:    krion@@
PR:             ports/88711 (related)
@
text
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bin/bp_biblio.pl
bin/bp_biofetch_genbank_proxy.pl
bin/bp_bioflat_index.pl
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bin/bp_chaos_plot.pl
bin/bp_classify_hits_kingdom.pl
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bin/bp_dbsplit.pl
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bin/bp_extract_feature_seq.pl
bin/bp_fast_load_gff.pl
bin/bp_fastam9_to_table.pl
bin/bp_feature_draw.pl
bin/bp_fetch.pl
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bin/bp_flanks.pl
bin/bp_frend.pl
bin/bp_gccalc.pl
bin/bp_genbank2gff.pl
bin/bp_genbank2gff3.pl
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bin/bp_glyphs2-demo.pl
bin/bp_heterogeneity_test.pl
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bin/bp_local_taxonomydb_query.pl
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bin/bp_meta_gff.pl
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bin/bp_nexus2nh.pl
bin/bp_nrdb.pl
bin/bp_oligo_count.pl
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bin/bp_pg_bulk_load_gff.pl
bin/bp_process_gadfly.pl
bin/bp_process_sgd.pl
bin/bp_process_wormbase.pl
bin/bp_query_entrez_taxa.pl
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bin/bp_search2alnblocks.pl
bin/bp_search2gff.pl
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bin/bp_seqret.pl
bin/bp_split_seq.pl
bin/bp_sreformat.pl
bin/bp_taxid4species.pl
bin/bp_translate_seq.pl
bin/bp_tree2pag.pl
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%%PORTDOCS%%%%DOCSDIR%%/doc/howto/xml/xsl/xhtml/division.xsl
%%PORTDOCS%%%%DOCSDIR%%/doc/howto/xml/xsl/xhtml/docbook.xsl
%%PORTDOCS%%%%DOCSDIR%%/doc/howto/xml/xsl/xhtml/docbookng.xsl
%%PORTDOCS%%%%DOCSDIR%%/doc/howto/xml/xsl/xhtml/ebnf.xsl
%%PORTDOCS%%%%DOCSDIR%%/doc/howto/xml/xsl/xhtml/footnote.xsl
%%PORTDOCS%%%%DOCSDIR%%/doc/howto/xml/xsl/xhtml/formal.xsl
%%PORTDOCS%%%%DOCSDIR%%/doc/howto/xml/xsl/xhtml/glossary.xsl
%%PORTDOCS%%%%DOCSDIR%%/doc/howto/xml/xsl/xhtml/graphics.xsl
%%PORTDOCS%%%%DOCSDIR%%/doc/howto/xml/xsl/xhtml/html-rtf.xsl
%%PORTDOCS%%%%DOCSDIR%%/doc/howto/xml/xsl/xhtml/html.xsl
%%PORTDOCS%%%%DOCSDIR%%/doc/howto/xml/xsl/xhtml/html2xhtml.xsl
%%PORTDOCS%%%%DOCSDIR%%/doc/howto/xml/xsl/xhtml/htmltbl.xsl
%%PORTDOCS%%%%DOCSDIR%%/doc/howto/xml/xsl/xhtml/index.xsl
%%PORTDOCS%%%%DOCSDIR%%/doc/howto/xml/xsl/xhtml/info.xsl
%%PORTDOCS%%%%DOCSDIR%%/doc/howto/xml/xsl/xhtml/inline.xsl
%%PORTDOCS%%%%DOCSDIR%%/doc/howto/xml/xsl/xhtml/keywords.xsl
%%PORTDOCS%%%%DOCSDIR%%/doc/howto/xml/xsl/xhtml/lists.xsl
%%PORTDOCS%%%%DOCSDIR%%/doc/howto/xml/xsl/xhtml/maketoc.xsl
%%PORTDOCS%%%%DOCSDIR%%/doc/howto/xml/xsl/xhtml/manifest.xsl
%%PORTDOCS%%%%DOCSDIR%%/doc/howto/xml/xsl/xhtml/math.xsl
%%PORTDOCS%%%%DOCSDIR%%/doc/howto/xml/xsl/xhtml/oldchunker.xsl
%%PORTDOCS%%%%DOCSDIR%%/doc/howto/xml/xsl/xhtml/onechunk.xsl
%%PORTDOCS%%%%DOCSDIR%%/doc/howto/xml/xsl/xhtml/param.xsl
%%PORTDOCS%%%%DOCSDIR%%/doc/howto/xml/xsl/xhtml/pi.xsl
%%PORTDOCS%%%%DOCSDIR%%/doc/howto/xml/xsl/xhtml/profile-chunk-code.xsl
%%PORTDOCS%%%%DOCSDIR%%/doc/howto/xml/xsl/xhtml/profile-chunk.xsl
%%PORTDOCS%%%%DOCSDIR%%/doc/howto/xml/xsl/xhtml/profile-docbook.xsl
%%PORTDOCS%%%%DOCSDIR%%/doc/howto/xml/xsl/xhtml/profile-onechunk.xsl
%%PORTDOCS%%%%DOCSDIR%%/doc/howto/xml/xsl/xhtml/qandaset.xsl
%%PORTDOCS%%%%DOCSDIR%%/doc/howto/xml/xsl/xhtml/refentry.xsl
%%PORTDOCS%%%%DOCSDIR%%/doc/howto/xml/xsl/xhtml/sections.xsl
%%PORTDOCS%%%%DOCSDIR%%/doc/howto/xml/xsl/xhtml/synop.xsl
%%PORTDOCS%%%%DOCSDIR%%/doc/howto/xml/xsl/xhtml/table.xsl
%%PORTDOCS%%%%DOCSDIR%%/doc/howto/xml/xsl/xhtml/task.xsl
%%PORTDOCS%%%%DOCSDIR%%/doc/howto/xml/xsl/xhtml/titlepage.templates.xsl
%%PORTDOCS%%%%DOCSDIR%%/doc/howto/xml/xsl/xhtml/titlepage.xsl
%%PORTDOCS%%%%DOCSDIR%%/doc/howto/xml/xsl/xhtml/toc.xsl
%%PORTDOCS%%%%DOCSDIR%%/doc/howto/xml/xsl/xhtml/verbatim.xsl
%%PORTDOCS%%%%DOCSDIR%%/doc/howto/xml/xsl/xhtml/xref.xsl
%%PORTDOCS%%%%DOCSDIR%%/doc/makedoc.PL
%%EXAMPLESDIR%%/Bio-DB-GFF/load_ucsc.pl
%%EXAMPLESDIR%%/align/align_on_codons.pl
%%EXAMPLESDIR%%/align/aligntutorial.pl
%%EXAMPLESDIR%%/align/clustalw.pl
%%EXAMPLESDIR%%/align/simplealign.pl
%%EXAMPLESDIR%%/biblio/biblio-eutils-example.pl
%%EXAMPLESDIR%%/biblio/biblio-soap-example.pl
%%EXAMPLESDIR%%/biblio/biblio_soap.pl
%%EXAMPLESDIR%%/biographics/all_glyphs.pl
%%EXAMPLESDIR%%/biographics/dynamic_glyphs.pl
%%EXAMPLESDIR%%/biographics/feature_data.gff
%%EXAMPLESDIR%%/biographics/feature_data.txt
%%EXAMPLESDIR%%/biographics/lots_of_glyphs.pl
%%EXAMPLESDIR%%/biographics/render_sequence.pl
%%EXAMPLESDIR%%/bioperl.pl
%%EXAMPLESDIR%%/cluster/dbsnp.pl
%%EXAMPLESDIR%%/contributed/nmrpdb_parse.pl
%%EXAMPLESDIR%%/contributed/prosite2perl.pl
%%EXAMPLESDIR%%/contributed/rebase2list.pl
%%EXAMPLESDIR%%/db/dbfetch
%%EXAMPLESDIR%%/db/est_tissue_query.pl
%%EXAMPLESDIR%%/db/gb2features.pl
%%EXAMPLESDIR%%/db/getGenBank.pl
%%EXAMPLESDIR%%/db/get_seqs.pl
%%EXAMPLESDIR%%/db/rfetch.pl
%%EXAMPLESDIR%%/db/use_registry.pl
%%EXAMPLESDIR%%/generate_random_seq.pl
%%EXAMPLESDIR%%/liveseq/change_gene.pl
%%EXAMPLESDIR%%/longorf.pl
%%EXAMPLESDIR%%/make_primers.pl
%%EXAMPLESDIR%%/popgen/parse_calc_stats.pl
%%EXAMPLESDIR%%/rev_and_trans.pl
%%EXAMPLESDIR%%/revcom_dir.pl
%%EXAMPLESDIR%%/root/README
%%EXAMPLESDIR%%/root/exceptions1.pl
%%EXAMPLESDIR%%/root/exceptions2.pl
%%EXAMPLESDIR%%/root/exceptions3.pl
%%EXAMPLESDIR%%/root/exceptions4.pl
%%EXAMPLESDIR%%/root/lib/Bio/PrimarySeq.pm
%%EXAMPLESDIR%%/root/lib/Bio/PrimarySeqI.pm
%%EXAMPLESDIR%%/root/lib/Bio/Seq.pm
%%EXAMPLESDIR%%/root/lib/Bio/SeqI.pm
%%EXAMPLESDIR%%/root/lib/Error.pm
%%EXAMPLESDIR%%/root/lib/TestInterface.pm
%%EXAMPLESDIR%%/root/lib/TestObject.pm
%%EXAMPLESDIR%%/searchio/blast_example.pl
%%EXAMPLESDIR%%/searchio/custom_writer.pl
%%EXAMPLESDIR%%/searchio/hitwriter.pl
%%EXAMPLESDIR%%/searchio/hspwriter.pl
%%EXAMPLESDIR%%/searchio/htmlwriter.pl
%%EXAMPLESDIR%%/searchio/psiblast_features.pl
%%EXAMPLESDIR%%/searchio/psiblast_iterations.pl
%%EXAMPLESDIR%%/searchio/rawwriter.pl
%%EXAMPLESDIR%%/searchio/resultwriter.pl
%%EXAMPLESDIR%%/searchio/waba2gff.pl
%%EXAMPLESDIR%%/searchio/waba2gff3.pl
%%EXAMPLESDIR%%/sirna/TAG
%%EXAMPLESDIR%%/sirna/rnai_finder.cgi
%%EXAMPLESDIR%%/structure/structure-io.pl
%%EXAMPLESDIR%%/subsequence.cgi
%%EXAMPLESDIR%%/tk/gsequence.pl
%%EXAMPLESDIR%%/tk/hitdisplay.pl
%%EXAMPLESDIR%%/tools/gb_to_gff.pl
%%EXAMPLESDIR%%/tools/gff2ps.pl
%%EXAMPLESDIR%%/tools/parse_codeml.pl
%%EXAMPLESDIR%%/tools/psw.pl
%%EXAMPLESDIR%%/tools/run_genscan.pl
%%EXAMPLESDIR%%/tools/seq_pattern.pl
%%EXAMPLESDIR%%/tools/standaloneblast.pl
%%EXAMPLESDIR%%/tree/paup2phylip.pl
@@dirrm %%EXAMPLESDIR%%/tree
@@dirrm %%EXAMPLESDIR%%/tools
@@dirrm %%EXAMPLESDIR%%/tk
@@dirrm %%EXAMPLESDIR%%/structure
@@dirrm %%EXAMPLESDIR%%/sirna
@@dirrm %%EXAMPLESDIR%%/searchio
@@dirrm %%EXAMPLESDIR%%/root/lib/Bio
@@dirrm %%EXAMPLESDIR%%/root/lib
@@dirrm %%EXAMPLESDIR%%/root
@@dirrm %%EXAMPLESDIR%%/popgen
@@dirrm %%EXAMPLESDIR%%/liveseq
@@dirrm %%EXAMPLESDIR%%/db
@@dirrm %%EXAMPLESDIR%%/contributed
@@dirrm %%EXAMPLESDIR%%/cluster
@@dirrm %%EXAMPLESDIR%%/biographics
@@dirrm %%EXAMPLESDIR%%/biblio
@@dirrm %%EXAMPLESDIR%%/align
@@dirrm %%EXAMPLESDIR%%/Bio-DB-GFF
@@dirrm %%EXAMPLESDIR%%
%%PORTDOCS%%@@dirrm %%DOCSDIR%%/doc/howto/xml/xsl/xhtml
%%PORTDOCS%%@@dirrm %%DOCSDIR%%/doc/howto/xml/xsl/profiling
%%PORTDOCS%%@@dirrm %%DOCSDIR%%/doc/howto/xml/xsl/lib
%%PORTDOCS%%@@dirrm %%DOCSDIR%%/doc/howto/xml/xsl/html
%%PORTDOCS%%@@dirrm %%DOCSDIR%%/doc/howto/xml/xsl/fo
%%PORTDOCS%%@@dirrm %%DOCSDIR%%/doc/howto/xml/xsl/common
%%PORTDOCS%%@@dirrm %%DOCSDIR%%/doc/howto/xml/xsl
%%PORTDOCS%%@@dirrm %%DOCSDIR%%/doc/howto/xml/stylesheet
%%PORTDOCS%%@@dirrm %%DOCSDIR%%/doc/howto/xml/ent
%%PORTDOCS%%@@dirrm %%DOCSDIR%%/doc/howto/xml
%%PORTDOCS%%@@dirrm %%DOCSDIR%%/doc/howto/txt
%%PORTDOCS%%@@dirrm %%DOCSDIR%%/doc/howto/pdf
%%PORTDOCS%%@@dirrm %%DOCSDIR%%/doc/howto/html/images
%%PORTDOCS%%@@dirrm %%DOCSDIR%%/doc/howto/html
%%PORTDOCS%%@@dirrm %%DOCSDIR%%/doc/howto/figs/graphics
%%PORTDOCS%%@@dirrm %%DOCSDIR%%/doc/howto/figs
%%PORTDOCS%%@@dirrm %%DOCSDIR%%/doc/howto/examples/graphics
%%PORTDOCS%%@@dirrm %%DOCSDIR%%/doc/howto/examples
%%PORTDOCS%%@@dirrm %%DOCSDIR%%/doc/howto
%%PORTDOCS%%@@dirrm %%DOCSDIR%%/doc/faq
d1236 20
a1255 2
@@dirrm %%DATADIR%%/scripts/utilities
@@dirrm %%DATADIR%%/scripts/tree
a1256 1
@@dirrm %%DATADIR%%/scripts/seqstats
d1258 2
d1261 5
d1267 1
a1267 1
@@dirrm %%DATADIR%%/scripts/index
a1268 3
@@dirrm %%DATADIR%%/scripts/das
@@dirrm %%DATADIR%%/scripts/biographics
@@dirrm %%DATADIR%%/scripts/biblio
d1270 1
a1270 1
@@dirrm %%DATADIR%%/scripts/Bio-DB-GFF
a1271 1
@@dirrm %%DATADIR%%/models
a1272 113
@@dirrmtry %%SITE_PERL%%/%%PERL_ARCH%%/auto/Bio
@@dirrm %%SITE_PERL%%/Bio/Variation/IO
@@dirrm %%SITE_PERL%%/Bio/Variation
@@dirrm %%SITE_PERL%%/Bio/TreeIO
@@dirrm %%SITE_PERL%%/Bio/Tree/Draw
@@dirrm %%SITE_PERL%%/Bio/Tree
@@dirrm %%SITE_PERL%%/Bio/Tools/Spidey
@@dirrm %%SITE_PERL%%/Bio/Tools/Sim4
@@dirrm %%SITE_PERL%%/Bio/Tools/SiRNA/Ruleset
@@dirrm %%SITE_PERL%%/Bio/Tools/SiRNA
@@dirrm %%SITE_PERL%%/Bio/Tools/Run
@@dirrm %%SITE_PERL%%/Bio/Tools/Primer/Assessor
@@dirrm %%SITE_PERL%%/Bio/Tools/Primer
@@dirrm %%SITE_PERL%%/Bio/Tools/Prediction
@@dirrm %%SITE_PERL%%/Bio/Tools/Phylo/Phylip
@@dirrm %%SITE_PERL%%/Bio/Tools/Phylo/PAML
@@dirrm %%SITE_PERL%%/Bio/Tools/Phylo/Molphy
@@dirrm %%SITE_PERL%%/Bio/Tools/Phylo
@@dirrm %%SITE_PERL%%/Bio/Tools/HMMER
@@dirrm %%SITE_PERL%%/Bio/Tools/EMBOSS
@@dirrm %%SITE_PERL%%/Bio/Tools/Blast
@@dirrm %%SITE_PERL%%/Bio/Tools/BPlite
@@dirrm %%SITE_PERL%%/Bio/Tools/Analysis/Protein
@@dirrm %%SITE_PERL%%/Bio/Tools/Analysis/DNA
@@dirrm %%SITE_PERL%%/Bio/Tools/Analysis
@@dirrm %%SITE_PERL%%/Bio/Tools/Alignment
@@dirrm %%SITE_PERL%%/Bio/Tools
@@dirrm %%SITE_PERL%%/Bio/Taxonomy
@@dirrm %%SITE_PERL%%/Bio/Symbol
@@dirrm %%SITE_PERL%%/Bio/Structure/SecStr/STRIDE
@@dirrm %%SITE_PERL%%/Bio/Structure/SecStr/DSSP
@@dirrm %%SITE_PERL%%/Bio/Structure/SecStr
@@dirrm %%SITE_PERL%%/Bio/Structure/IO
@@dirrm %%SITE_PERL%%/Bio/Structure
@@dirrm %%SITE_PERL%%/Bio/SeqIO/tinyseq
@@dirrm %%SITE_PERL%%/Bio/SeqIO/game
@@dirrm %%SITE_PERL%%/Bio/SeqIO
@@dirrm %%SITE_PERL%%/Bio/SeqFeature/Tools
@@dirrm %%SITE_PERL%%/Bio/SeqFeature/SiRNA
@@dirrm %%SITE_PERL%%/Bio/SeqFeature/Gene
@@dirrm %%SITE_PERL%%/Bio/SeqFeature
@@dirrm %%SITE_PERL%%/Bio/Seq/Meta
@@dirrm %%SITE_PERL%%/Bio/Seq
@@dirrm %%SITE_PERL%%/Bio/SearchIO/Writer
@@dirrm %%SITE_PERL%%/Bio/SearchIO
@@dirrm %%SITE_PERL%%/Bio/Search/Result
@@dirrm %%SITE_PERL%%/Bio/Search/Iteration
@@dirrm %%SITE_PERL%%/Bio/Search/Hit
@@dirrm %%SITE_PERL%%/Bio/Search/HSP
@@dirrm %%SITE_PERL%%/Bio/Search
@@dirrm %%SITE_PERL%%/Bio/Root
@@dirrm %%SITE_PERL%%/Bio/Restriction/IO
@@dirrm %%SITE_PERL%%/Bio/Restriction/Enzyme
@@dirrm %%SITE_PERL%%/Bio/Restriction
@@dirrm %%SITE_PERL%%/Bio/PopGen/Simulation
@@dirrm %%SITE_PERL%%/Bio/PopGen/IO
@@dirrm %%SITE_PERL%%/Bio/PopGen
@@dirrm %%SITE_PERL%%/Bio/Phenotype/OMIM
@@dirrm %%SITE_PERL%%/Bio/Phenotype/MeSH
@@dirrm %%SITE_PERL%%/Bio/Phenotype
@@dirrm %%SITE_PERL%%/Bio/OntologyIO/Handlers
@@dirrm %%SITE_PERL%%/Bio/OntologyIO
@@dirrm %%SITE_PERL%%/Bio/Ontology/SimpleGOEngine
@@dirrm %%SITE_PERL%%/Bio/Ontology
@@dirrm %%SITE_PERL%%/Bio/Matrix/PSM/IO
@@dirrm %%SITE_PERL%%/Bio/Matrix/PSM
@@dirrm %%SITE_PERL%%/Bio/Matrix/IO
@@dirrm %%SITE_PERL%%/Bio/Matrix
@@dirrm %%SITE_PERL%%/Bio/MapIO
@@dirrm %%SITE_PERL%%/Bio/Map
@@dirrm %%SITE_PERL%%/Bio/Location
@@dirrm %%SITE_PERL%%/Bio/LiveSeq/IO
@@dirrm %%SITE_PERL%%/Bio/LiveSeq
@@dirrm %%SITE_PERL%%/Bio/Index
@@dirrm %%SITE_PERL%%/Bio/Graphics/Glyph
@@dirrm %%SITE_PERL%%/Bio/Graphics/FeatureFile
@@dirrm %%SITE_PERL%%/Bio/Graphics
@@dirrm %%SITE_PERL%%/Bio/Graph/SimpleGraph
@@dirrm %%SITE_PERL%%/Bio/Graph/IO
@@dirrm %%SITE_PERL%%/Bio/Graph
@@dirrm %%SITE_PERL%%/Bio/FeatureIO
@@dirrm %%SITE_PERL%%/Bio/Factory
@@dirrm %%SITE_PERL%%/Bio/Expression/FeatureSet
@@dirrm %%SITE_PERL%%/Bio/Expression/FeatureGroup
@@dirrm %%SITE_PERL%%/Bio/Expression
@@dirrm %%SITE_PERL%%/Bio/Event
@@dirrm %%SITE_PERL%%/Bio/Das
@@dirrm %%SITE_PERL%%/Bio/DB/Taxonomy
@@dirrm %%SITE_PERL%%/Bio/DB/Query
@@dirrm %%SITE_PERL%%/Bio/DB/GFF/Util
@@dirrm %%SITE_PERL%%/Bio/DB/GFF/Aggregator
@@dirrm %%SITE_PERL%%/Bio/DB/GFF/Adaptor/memory
@@dirrm %%SITE_PERL%%/Bio/DB/GFF/Adaptor/dbi
@@dirrm %%SITE_PERL%%/Bio/DB/GFF/Adaptor/berkeleydb
@@dirrm %%SITE_PERL%%/Bio/DB/GFF/Adaptor
@@dirrm %%SITE_PERL%%/Bio/DB/GFF
@@dirrm %%SITE_PERL%%/Bio/DB/Flat/BDB
@@dirrm %%SITE_PERL%%/Bio/DB/Flat
@@dirrm %%SITE_PERL%%/Bio/DB/Biblio
@@dirrm %%SITE_PERL%%/Bio/DB
@@dirrm %%SITE_PERL%%/Bio/Coordinate/Result
@@dirrm %%SITE_PERL%%/Bio/Coordinate
@@dirrm %%SITE_PERL%%/Bio/CodonUsage
@@dirrm %%SITE_PERL%%/Bio/ClusterIO
@@dirrm %%SITE_PERL%%/Bio/Cluster
@@dirrm %%SITE_PERL%%/Bio/Biblio/IO
@@dirrm %%SITE_PERL%%/Bio/Biblio
@@dirrm %%SITE_PERL%%/Bio/Assembly/IO
@@dirrm %%SITE_PERL%%/Bio/Assembly
@@dirrm %%SITE_PERL%%/Bio/Annotation
@@dirrm %%SITE_PERL%%/Bio/AlignIO
@@dirrm %%SITE_PERL%%/Bio/Align
@@dirrmtry %%SITE_PERL%%/Bio
@


1.3
log
@- Re-add p5-bioperl-devel, development version of biology/p5-bioperl
  (A collection of Perl modules for bioinformatics)

PR:		ports/89497
Submitted by:	Mauricio Herrera Cuadra <arareko@@yahoo.com>
@
text
@d1459 1
a1459 1
@@unexec rmdir %D/%%SITE_PERL%%/%%PERL_ARCH%%/auto/Bio 2>/dev/null || true
d1571 1
a1571 1
@@unexec rmdir %D/%%SITE_PERL%%/Bio 2>/dev/null || true
@


1.2
log
@As announced on May 6, remove the broken p5-bioperl-devel port.
@
text
@d1 1571
a1571 292
%%PLIST_CORBA_CLIENT%%lib/perl5/site_perl/5.6.0/Bio/CorbaClient/Base.pm
%%PLIST_CORBA_CLIENT%%lib/perl5/site_perl/5.6.0/Bio/CorbaClient/Client.pm
%%PLIST_CORBA_CLIENT%%lib/perl5/site_perl/5.6.0/Bio/CorbaClient/ORB.pm
%%PLIST_CORBA_CLIENT%%lib/perl5/site_perl/5.6.0/Bio/CorbaClient/PrimarySeq.pm
%%PLIST_CORBA_CLIENT%%lib/perl5/site_perl/5.6.0/Bio/CorbaClient/Seq.pm
%%PLIST_CORBA_CLIENT%%lib/perl5/site_perl/5.6.0/Bio/CorbaClient/SeqFeature.pm
%%PLIST_CORBA_CLIENT%%lib/perl5/site_perl/5.6.0/Bio/DB/Biocorba.pm
%%PLIST_CORBA_CLIENT%%lib/perl5/site_perl/5.6.0/Bio/SeqIO/biocorba.pm
%%PLIST_CORBA_SERVER%%lib/perl5/site_perl/5.6.0/Bio/CorbaServer/AnonymousSeq.pm
%%PLIST_CORBA_SERVER%%lib/perl5/site_perl/5.6.0/Bio/CorbaServer/Base.pm
%%PLIST_CORBA_SERVER%%lib/perl5/site_perl/5.6.0/Bio/CorbaServer/BioEnv.pm
%%PLIST_CORBA_SERVER%%lib/perl5/site_perl/5.6.0/Bio/CorbaServer/PrimarySeq.pm
%%PLIST_CORBA_SERVER%%lib/perl5/site_perl/5.6.0/Bio/CorbaServer/PrimarySeqDB.pm
%%PLIST_CORBA_SERVER%%lib/perl5/site_perl/5.6.0/Bio/CorbaServer/PrimarySeqIterator.pm
%%PLIST_CORBA_SERVER%%lib/perl5/site_perl/5.6.0/Bio/CorbaServer/PrimarySeqVector.pm
%%PLIST_CORBA_SERVER%%lib/perl5/site_perl/5.6.0/Bio/CorbaServer/Seq.pm
%%PLIST_CORBA_SERVER%%lib/perl5/site_perl/5.6.0/Bio/CorbaServer/SeqDB.pm
%%PLIST_CORBA_SERVER%%lib/perl5/site_perl/5.6.0/Bio/CorbaServer/SeqFeature.pm
%%PLIST_CORBA_SERVER%%lib/perl5/site_perl/5.6.0/Bio/CorbaServer/SeqFeatureIterator.pm
%%PLIST_CORBA_SERVER%%lib/perl5/site_perl/5.6.0/Bio/CorbaServer/SeqFeatureVector.pm
%%PLIST_CORBA_SERVER%%lib/perl5/site_perl/5.6.0/Bio/CorbaServer/Server.pm
%%PLIST_GUI%%lib/perl5/site_perl/5.6.0/Bio/Tk/AnnotMap.pm
%%PLIST_GUI%%lib/perl5/site_perl/5.6.0/Bio/Tk/BioTkPerl8_1.pm
%%PLIST_GUI%%lib/perl5/site_perl/5.6.0/Bio/Tk/GO_Browser.pm
%%PLIST_GUI%%lib/perl5/site_perl/5.6.0/Bio/Tk/HitDisplay.pm
%%PLIST_GUI%%lib/perl5/site_perl/5.6.0/Bio/Tk/README
%%PLIST_GUI%%lib/perl5/site_perl/5.6.0/Bio/Tk/SeqCanvas.pm
%%PLIST_GUI%%lib/perl5/site_perl/5.6.0/Bio/Tk/Tkpsh.pl
%%PLIST_GUI%%lib/perl5/site_perl/5.6.0/Bio/Tk/bioTk_Map.pm
%%PLIST_GUI%%lib/perl5/site_perl/5.6.0/Bio/Tk/bioTk_SeqSubs.pm
%%PLIST_GUI%%lib/perl5/site_perl/5.6.0/Bio/Tk/bioTk_Sequence.pm
%%PLIST_GUI%%lib/perl5/site_perl/5.6.0/Bio/Tk/bioTk_Utilities.pm
%%PLIST_GUI%%lib/perl5/site_perl/5.6.0/%%PERL_ARCH%%/auto/Bio/Tk/.packlist
lib/perl5/site_perl/%%PERL_VER%%/%%PERL_ARCH%%/Bio/Ext/Align.pm
lib/perl5/site_perl/%%PERL_VER%%/%%PERL_ARCH%%/auto/Bio/Ext/Align/.packlist
lib/perl5/site_perl/%%PERL_VER%%/%%PERL_ARCH%%/auto/Bio/Ext/Align/Align.bs
lib/perl5/site_perl/%%PERL_VER%%/%%PERL_ARCH%%/auto/Bio/Ext/Align/Align.so
lib/perl5/site_perl/%%PERL_VER%%/Bio/AlignIO.pm
lib/perl5/site_perl/%%PERL_VER%%/Bio/AlignIO/bl2seq.pm
lib/perl5/site_perl/%%PERL_VER%%/Bio/AlignIO/clustalw.pm
lib/perl5/site_perl/%%PERL_VER%%/Bio/AlignIO/fasta.pm
lib/perl5/site_perl/%%PERL_VER%%/Bio/AlignIO/mase.pm
lib/perl5/site_perl/%%PERL_VER%%/Bio/AlignIO/meme.pm
lib/perl5/site_perl/%%PERL_VER%%/Bio/AlignIO/msf.pm
lib/perl5/site_perl/%%PERL_VER%%/Bio/AlignIO/nexus.pm
lib/perl5/site_perl/%%PERL_VER%%/Bio/AlignIO/pfam.pm
lib/perl5/site_perl/%%PERL_VER%%/Bio/AlignIO/phylip.pm
lib/perl5/site_perl/%%PERL_VER%%/Bio/AlignIO/prodom.pm
lib/perl5/site_perl/%%PERL_VER%%/Bio/AlignIO/selex.pm
lib/perl5/site_perl/%%PERL_VER%%/Bio/AlignIO/stockholm.pm
lib/perl5/site_perl/%%PERL_VER%%/Bio/Annotation.pm
lib/perl5/site_perl/%%PERL_VER%%/Bio/Annotation/Comment.pm
lib/perl5/site_perl/%%PERL_VER%%/Bio/Annotation/DBLink.pm
lib/perl5/site_perl/%%PERL_VER%%/Bio/Annotation/Reference.pm
lib/perl5/site_perl/%%PERL_VER%%/Bio/DB/Ace.pm
lib/perl5/site_perl/%%PERL_VER%%/Bio/DB/EMBL.pm
lib/perl5/site_perl/%%PERL_VER%%/Bio/DB/Fasta.pm
lib/perl5/site_perl/%%PERL_VER%%/Bio/DB/GDB.pm
lib/perl5/site_perl/%%PERL_VER%%/Bio/DB/GFF.pm
lib/perl5/site_perl/%%PERL_VER%%/Bio/DB/GFF/Adaptor/dbi.pm
lib/perl5/site_perl/%%PERL_VER%%/Bio/DB/GFF/Adaptor/dbi/mysql.pm
lib/perl5/site_perl/%%PERL_VER%%/Bio/DB/GFF/Adaptor/dbi/mysqlopt.pm
lib/perl5/site_perl/%%PERL_VER%%/Bio/DB/GFF/Aggregator.pm
lib/perl5/site_perl/%%PERL_VER%%/Bio/DB/GFF/Aggregator/alignment.pm
lib/perl5/site_perl/%%PERL_VER%%/Bio/DB/GFF/Aggregator/clone.pm
lib/perl5/site_perl/%%PERL_VER%%/Bio/DB/GFF/Aggregator/none.pm
lib/perl5/site_perl/%%PERL_VER%%/Bio/DB/GFF/Aggregator/transcript.pm
lib/perl5/site_perl/%%PERL_VER%%/Bio/DB/GFF/Featname.pm
lib/perl5/site_perl/%%PERL_VER%%/Bio/DB/GFF/Feature.pm
lib/perl5/site_perl/%%PERL_VER%%/Bio/DB/GFF/Homol.pm
lib/perl5/site_perl/%%PERL_VER%%/Bio/DB/GFF/RelSegment.pm
lib/perl5/site_perl/%%PERL_VER%%/Bio/DB/GFF/Segment.pm
lib/perl5/site_perl/%%PERL_VER%%/Bio/DB/GFF/Typename.pm
lib/perl5/site_perl/%%PERL_VER%%/Bio/DB/GFF/Util/Binning.pm
lib/perl5/site_perl/%%PERL_VER%%/Bio/DB/GFF/Util/Rearrange.pm
lib/perl5/site_perl/%%PERL_VER%%/Bio/DB/GenBank.pm
lib/perl5/site_perl/%%PERL_VER%%/Bio/DB/GenPept.pm
lib/perl5/site_perl/%%PERL_VER%%/Bio/DB/NCBIHelper.pm
lib/perl5/site_perl/%%PERL_VER%%/Bio/DB/RandomAccessI.pm
lib/perl5/site_perl/%%PERL_VER%%/Bio/DB/SeqI.pm
lib/perl5/site_perl/%%PERL_VER%%/Bio/DB/SwissProt.pm
lib/perl5/site_perl/%%PERL_VER%%/Bio/DB/Universal.pm
lib/perl5/site_perl/%%PERL_VER%%/Bio/DB/UpdateableSeqI.pm
lib/perl5/site_perl/%%PERL_VER%%/Bio/DB/WebDBSeqI.pm
lib/perl5/site_perl/%%PERL_VER%%/Bio/DBLinkContainerI.pm
lib/perl5/site_perl/%%PERL_VER%%/Bio/Factory/ApplicationFactoryI.pm
lib/perl5/site_perl/%%PERL_VER%%/Bio/Factory/DriverFactory.pm
lib/perl5/site_perl/%%PERL_VER%%/Bio/Factory/EMBOSS.pm
lib/perl5/site_perl/%%PERL_VER%%/Bio/Factory/SeqAnalysisParserFactory.pm
lib/perl5/site_perl/%%PERL_VER%%/Bio/Factory/SeqAnalysisParserFactoryI.pm
lib/perl5/site_perl/%%PERL_VER%%/Bio/Index/Abstract.pm
lib/perl5/site_perl/%%PERL_VER%%/Bio/Index/AbstractSeq.pm
lib/perl5/site_perl/%%PERL_VER%%/Bio/Index/EMBL.pm
lib/perl5/site_perl/%%PERL_VER%%/Bio/Index/Fasta.pm
lib/perl5/site_perl/%%PERL_VER%%/Bio/Index/GenBank.pm
lib/perl5/site_perl/%%PERL_VER%%/Bio/Index/SwissPfam.pm
lib/perl5/site_perl/%%PERL_VER%%/Bio/Index/Swissprot.pm
lib/perl5/site_perl/%%PERL_VER%%/Bio/LiveSeq/AARange.pm
lib/perl5/site_perl/%%PERL_VER%%/Bio/LiveSeq/Chain.pm
lib/perl5/site_perl/%%PERL_VER%%/Bio/LiveSeq/ChainI.pm
lib/perl5/site_perl/%%PERL_VER%%/Bio/LiveSeq/DNA.pm
lib/perl5/site_perl/%%PERL_VER%%/Bio/LiveSeq/Exon.pm
lib/perl5/site_perl/%%PERL_VER%%/Bio/LiveSeq/Gene.pm
lib/perl5/site_perl/%%PERL_VER%%/Bio/LiveSeq/IO/BioPerl.pm
lib/perl5/site_perl/%%PERL_VER%%/Bio/LiveSeq/IO/Loader.pm
lib/perl5/site_perl/%%PERL_VER%%/Bio/LiveSeq/IO/SRS.pm
lib/perl5/site_perl/%%PERL_VER%%/Bio/LiveSeq/Intron.pm
lib/perl5/site_perl/%%PERL_VER%%/Bio/LiveSeq/Mutation.pm
lib/perl5/site_perl/%%PERL_VER%%/Bio/LiveSeq/Mutator.pm
lib/perl5/site_perl/%%PERL_VER%%/Bio/LiveSeq/Prim_Transcript.pm
lib/perl5/site_perl/%%PERL_VER%%/Bio/LiveSeq/Range.pm
lib/perl5/site_perl/%%PERL_VER%%/Bio/LiveSeq/Repeat_Region.pm
lib/perl5/site_perl/%%PERL_VER%%/Bio/LiveSeq/Repeat_Unit.pm
lib/perl5/site_perl/%%PERL_VER%%/Bio/LiveSeq/SeqI.pm
lib/perl5/site_perl/%%PERL_VER%%/Bio/LiveSeq/Transcript.pm
lib/perl5/site_perl/%%PERL_VER%%/Bio/LiveSeq/Translation.pm
lib/perl5/site_perl/%%PERL_VER%%/Bio/LocatableSeq.pm
lib/perl5/site_perl/%%PERL_VER%%/Bio/Location/AvWithinCoordPolicy.pm
lib/perl5/site_perl/%%PERL_VER%%/Bio/Location/CoordinatePolicyI.pm
lib/perl5/site_perl/%%PERL_VER%%/Bio/Location/Fuzzy.pm
lib/perl5/site_perl/%%PERL_VER%%/Bio/Location/FuzzyLocationI.pm
lib/perl5/site_perl/%%PERL_VER%%/Bio/Location/NarrowestCoordPolicy.pm
lib/perl5/site_perl/%%PERL_VER%%/Bio/Location/Simple.pm
lib/perl5/site_perl/%%PERL_VER%%/Bio/Location/Split.pm
lib/perl5/site_perl/%%PERL_VER%%/Bio/Location/SplitLocationI.pm
lib/perl5/site_perl/%%PERL_VER%%/Bio/Location/WidestCoordPolicy.pm
lib/perl5/site_perl/%%PERL_VER%%/Bio/LocationI.pm
lib/perl5/site_perl/%%PERL_VER%%/Bio/PrimarySeq.pm
lib/perl5/site_perl/%%PERL_VER%%/Bio/PrimarySeqI.pm
lib/perl5/site_perl/%%PERL_VER%%/Bio/Range.pm
lib/perl5/site_perl/%%PERL_VER%%/Bio/RangeI.pm
lib/perl5/site_perl/%%PERL_VER%%/Bio/Root/Err.pm
lib/perl5/site_perl/%%PERL_VER%%/Bio/Root/Global.pm
lib/perl5/site_perl/%%PERL_VER%%/Bio/Root/IO.pm
lib/perl5/site_perl/%%PERL_VER%%/Bio/Root/IOManager.pm
lib/perl5/site_perl/%%PERL_VER%%/Bio/Root/Object.pm
lib/perl5/site_perl/%%PERL_VER%%/Bio/Root/RootI.pm
lib/perl5/site_perl/%%PERL_VER%%/Bio/Root/Utilities.pm
lib/perl5/site_perl/%%PERL_VER%%/Bio/Root/Vector.pm
lib/perl5/site_perl/%%PERL_VER%%/Bio/Root/Xref.pm
lib/perl5/site_perl/%%PERL_VER%%/Bio/SearchDist.pm
lib/perl5/site_perl/%%PERL_VER%%/Bio/Seq.pm
lib/perl5/site_perl/%%PERL_VER%%/Bio/Seq/LargePrimarySeq.pm
lib/perl5/site_perl/%%PERL_VER%%/Bio/Seq/LargeSeq.pm
lib/perl5/site_perl/%%PERL_VER%%/Bio/Seq/RichSeq.pm
lib/perl5/site_perl/%%PERL_VER%%/Bio/Seq/RichSeqI.pm
lib/perl5/site_perl/%%PERL_VER%%/Bio/SeqAnalysisParserI.pm
lib/perl5/site_perl/%%PERL_VER%%/Bio/SeqFeature/Computation.pm
lib/perl5/site_perl/%%PERL_VER%%/Bio/SeqFeature/Exon.pm
lib/perl5/site_perl/%%PERL_VER%%/Bio/SeqFeature/FeaturePair.pm
lib/perl5/site_perl/%%PERL_VER%%/Bio/SeqFeature/Gene/Exon.pm
lib/perl5/site_perl/%%PERL_VER%%/Bio/SeqFeature/Gene/ExonI.pm
lib/perl5/site_perl/%%PERL_VER%%/Bio/SeqFeature/Gene/GeneStructure.pm
lib/perl5/site_perl/%%PERL_VER%%/Bio/SeqFeature/Gene/GeneStructureI.pm
lib/perl5/site_perl/%%PERL_VER%%/Bio/SeqFeature/Gene/Transcript.pm
lib/perl5/site_perl/%%PERL_VER%%/Bio/SeqFeature/Gene/TranscriptI.pm
lib/perl5/site_perl/%%PERL_VER%%/Bio/SeqFeature/Generic.pm
lib/perl5/site_perl/%%PERL_VER%%/Bio/SeqFeature/Intron.pm
lib/perl5/site_perl/%%PERL_VER%%/Bio/SeqFeature/PolyA.pm
lib/perl5/site_perl/%%PERL_VER%%/Bio/SeqFeature/Promoter.pm
lib/perl5/site_perl/%%PERL_VER%%/Bio/SeqFeature/Similarity.pm
lib/perl5/site_perl/%%PERL_VER%%/Bio/SeqFeature/SimilarityPair.pm
lib/perl5/site_perl/%%PERL_VER%%/Bio/SeqFeature/UTR3.pm
lib/perl5/site_perl/%%PERL_VER%%/Bio/SeqFeature/UTR5.pm
lib/perl5/site_perl/%%PERL_VER%%/Bio/SeqFeatureI.pm
lib/perl5/site_perl/%%PERL_VER%%/Bio/SeqI.pm
lib/perl5/site_perl/%%PERL_VER%%/Bio/SeqIO.pm
lib/perl5/site_perl/%%PERL_VER%%/Bio/SeqIO/FTHelper.pm
lib/perl5/site_perl/%%PERL_VER%%/Bio/SeqIO/MultiFile.pm
lib/perl5/site_perl/%%PERL_VER%%/Bio/SeqIO/ace.pm
lib/perl5/site_perl/%%PERL_VER%%/Bio/SeqIO/embl.pm
lib/perl5/site_perl/%%PERL_VER%%/Bio/SeqIO/fasta.pm
lib/perl5/site_perl/%%PERL_VER%%/Bio/SeqIO/game.pm
lib/perl5/site_perl/%%PERL_VER%%/Bio/SeqIO/game/featureHandler.pm
lib/perl5/site_perl/%%PERL_VER%%/Bio/SeqIO/game/idHandler.pm
lib/perl5/site_perl/%%PERL_VER%%/Bio/SeqIO/game/seqHandler.pm
lib/perl5/site_perl/%%PERL_VER%%/Bio/SeqIO/gcg.pm
lib/perl5/site_perl/%%PERL_VER%%/Bio/SeqIO/genbank.pm
lib/perl5/site_perl/%%PERL_VER%%/Bio/SeqIO/largefasta.pm
lib/perl5/site_perl/%%PERL_VER%%/Bio/SeqIO/pir.pm
lib/perl5/site_perl/%%PERL_VER%%/Bio/SeqIO/raw.pm
lib/perl5/site_perl/%%PERL_VER%%/Bio/SeqIO/scf.pm
lib/perl5/site_perl/%%PERL_VER%%/Bio/SeqIO/swiss.pm
lib/perl5/site_perl/%%PERL_VER%%/Bio/SeqUtils.pm
lib/perl5/site_perl/%%PERL_VER%%/Bio/SimpleAlign.pm
lib/perl5/site_perl/%%PERL_VER%%/Bio/Species.pm
lib/perl5/site_perl/%%PERL_VER%%/Bio/Tools/AlignFactory.pm
lib/perl5/site_perl/%%PERL_VER%%/Bio/Tools/AnalysisResult.pm
lib/perl5/site_perl/%%PERL_VER%%/Bio/Tools/BPbl2seq.pm
lib/perl5/site_perl/%%PERL_VER%%/Bio/Tools/BPlite.pm
lib/perl5/site_perl/%%PERL_VER%%/Bio/Tools/BPlite/HSP.pm
lib/perl5/site_perl/%%PERL_VER%%/Bio/Tools/BPlite/Iteration.pm
lib/perl5/site_perl/%%PERL_VER%%/Bio/Tools/BPlite/Sbjct.pm
lib/perl5/site_perl/%%PERL_VER%%/Bio/Tools/BPpsilite.pm
lib/perl5/site_perl/%%PERL_VER%%/Bio/Tools/Blast.pm
lib/perl5/site_perl/%%PERL_VER%%/Bio/Tools/Blast/CHANGES
lib/perl5/site_perl/%%PERL_VER%%/Bio/Tools/Blast/HSP.pm
lib/perl5/site_perl/%%PERL_VER%%/Bio/Tools/Blast/HTML.pm
lib/perl5/site_perl/%%PERL_VER%%/Bio/Tools/Blast/README
lib/perl5/site_perl/%%PERL_VER%%/Bio/Tools/Blast/Run/LocalBlast.pm
lib/perl5/site_perl/%%PERL_VER%%/Bio/Tools/Blast/Run/Webblast.pm
lib/perl5/site_perl/%%PERL_VER%%/Bio/Tools/Blast/Run/postclient.pl
lib/perl5/site_perl/%%PERL_VER%%/Bio/Tools/Blast/Sbjct.pm
lib/perl5/site_perl/%%PERL_VER%%/Bio/Tools/CodonTable.pm
lib/perl5/site_perl/%%PERL_VER%%/Bio/Tools/EPCR.pm
lib/perl5/site_perl/%%PERL_VER%%/Bio/Tools/ESTScan.pm
lib/perl5/site_perl/%%PERL_VER%%/Bio/Tools/Fasta.pm
lib/perl5/site_perl/%%PERL_VER%%/Bio/Tools/GFF.pm
lib/perl5/site_perl/%%PERL_VER%%/Bio/Tools/Genemark.pm
lib/perl5/site_perl/%%PERL_VER%%/Bio/Tools/Genscan.pm
lib/perl5/site_perl/%%PERL_VER%%/Bio/Tools/Grail.pm
lib/perl5/site_perl/%%PERL_VER%%/Bio/Tools/HMMER/Domain.pm
lib/perl5/site_perl/%%PERL_VER%%/Bio/Tools/HMMER/Results.pm
lib/perl5/site_perl/%%PERL_VER%%/Bio/Tools/HMMER/Set.pm
lib/perl5/site_perl/%%PERL_VER%%/Bio/Tools/IUPAC.pm
lib/perl5/site_perl/%%PERL_VER%%/Bio/Tools/MZEF.pm
lib/perl5/site_perl/%%PERL_VER%%/Bio/Tools/OddCodes.pm
lib/perl5/site_perl/%%PERL_VER%%/Bio/Tools/Prediction/Exon.pm
lib/perl5/site_perl/%%PERL_VER%%/Bio/Tools/Prediction/Gene.pm
lib/perl5/site_perl/%%PERL_VER%%/Bio/Tools/RestrictionEnzyme.pm
lib/perl5/site_perl/%%PERL_VER%%/Bio/Tools/Run/Alignment/Clustalw.pm
lib/perl5/site_perl/%%PERL_VER%%/Bio/Tools/Run/Alignment/TCoffee.pm
lib/perl5/site_perl/%%PERL_VER%%/Bio/Tools/Run/EMBOSSApplication.pm
lib/perl5/site_perl/%%PERL_VER%%/Bio/Tools/Run/RemoteBlast.pm
lib/perl5/site_perl/%%PERL_VER%%/Bio/Tools/Run/StandAloneBlast.pm
lib/perl5/site_perl/%%PERL_VER%%/Bio/Tools/SeqAnal.pm
lib/perl5/site_perl/%%PERL_VER%%/Bio/Tools/SeqPattern.pm
lib/perl5/site_perl/%%PERL_VER%%/Bio/Tools/SeqStats.pm
lib/perl5/site_perl/%%PERL_VER%%/Bio/Tools/SeqWords.pm
lib/perl5/site_perl/%%PERL_VER%%/Bio/Tools/Sigcleave.pm
lib/perl5/site_perl/%%PERL_VER%%/Bio/Tools/Sim4/Exon.pm
lib/perl5/site_perl/%%PERL_VER%%/Bio/Tools/Sim4/Results.pm
lib/perl5/site_perl/%%PERL_VER%%/Bio/Tools/WWW.pm
lib/perl5/site_perl/%%PERL_VER%%/Bio/Tools/pSW.pm
lib/perl5/site_perl/%%PERL_VER%%/Bio/UnivAln.pm
lib/perl5/site_perl/%%PERL_VER%%/Bio/Variation/AAChange.pm
lib/perl5/site_perl/%%PERL_VER%%/Bio/Variation/AAReverseMutate.pm
lib/perl5/site_perl/%%PERL_VER%%/Bio/Variation/Allele.pm
lib/perl5/site_perl/%%PERL_VER%%/Bio/Variation/DNAMutation.pm
lib/perl5/site_perl/%%PERL_VER%%/Bio/Variation/IO.pm
lib/perl5/site_perl/%%PERL_VER%%/Bio/Variation/IO/flat.pm
lib/perl5/site_perl/%%PERL_VER%%/Bio/Variation/IO/xml.pm
lib/perl5/site_perl/%%PERL_VER%%/Bio/Variation/README
lib/perl5/site_perl/%%PERL_VER%%/Bio/Variation/RNAChange.pm
lib/perl5/site_perl/%%PERL_VER%%/Bio/Variation/SeqDiff.pm
lib/perl5/site_perl/%%PERL_VER%%/Bio/Variation/VariantI.pm
lib/perl5/site_perl/%%PERL_VER%%/bioback.pod
lib/perl5/site_perl/%%PERL_VER%%/biodesign.pod
lib/perl5/site_perl/%%PERL_VER%%/bioperl.pod
lib/perl5/site_perl/%%PERL_VER%%/biostart.pod
lib/perl5/site_perl/%%PERL_VER%%/bptutorial.pl
lib/perl5/site_perl/5.6.0/%%PERL_ARCH%%/auto/Bio/.packlist
%%PLIST_GUI%%@@dirrm lib/perl5/site_perl/5.6.0/mach/auto/Bio/Tk
%%PLIST_GUI%%@@dirrm lib/perl5/site_perl/5.6.0/Bio/Tk
%%PLIST_CORBA_SERVER%%@@dirrm lib/perl5/site_perl/5.6.0/Bio/CorbaServer
%%PLIST_CORBA_CLIENT%%@@dirrm lib/perl5/site_perl/5.6.0/Bio/CorbaClient
@@dirrm lib/perl5/site_perl/%%PERL_VER%%/Bio/Variation/IO
@@dirrm lib/perl5/site_perl/%%PERL_VER%%/Bio/Variation
@@dirrm lib/perl5/site_perl/%%PERL_VER%%/Bio/Tools/Sim4
@@dirrm lib/perl5/site_perl/%%PERL_VER%%/Bio/Tools/Run/Alignment
@@dirrm lib/perl5/site_perl/%%PERL_VER%%/Bio/Tools/Run
@@dirrm lib/perl5/site_perl/%%PERL_VER%%/Bio/Tools/Prediction
@@dirrm lib/perl5/site_perl/%%PERL_VER%%/Bio/Tools/HMMER
@@dirrm lib/perl5/site_perl/%%PERL_VER%%/Bio/Tools/Blast/Run
@@dirrm lib/perl5/site_perl/%%PERL_VER%%/Bio/Tools/Blast
@@dirrm lib/perl5/site_perl/%%PERL_VER%%/Bio/Tools/BPlite
@@dirrm lib/perl5/site_perl/%%PERL_VER%%/Bio/Tools
@@dirrm lib/perl5/site_perl/%%PERL_VER%%/Bio/SeqIO/game
@@dirrm lib/perl5/site_perl/%%PERL_VER%%/Bio/SeqIO
@@dirrm lib/perl5/site_perl/%%PERL_VER%%/Bio/SeqFeature/Gene
@@dirrm lib/perl5/site_perl/%%PERL_VER%%/Bio/SeqFeature
@@dirrm lib/perl5/site_perl/%%PERL_VER%%/Bio/Seq
@@dirrm lib/perl5/site_perl/%%PERL_VER%%/Bio/Root
@@dirrm lib/perl5/site_perl/%%PERL_VER%%/Bio/Location
@@dirrm lib/perl5/site_perl/%%PERL_VER%%/Bio/LiveSeq/IO
@@dirrm lib/perl5/site_perl/%%PERL_VER%%/Bio/LiveSeq
@@dirrm lib/perl5/site_perl/%%PERL_VER%%/Bio/Index
@@dirrm lib/perl5/site_perl/%%PERL_VER%%/Bio/Factory
@@dirrm lib/perl5/site_perl/%%PERL_VER%%/Bio/DB/GFF/Util
@@dirrm lib/perl5/site_perl/%%PERL_VER%%/Bio/DB/GFF/Aggregator
@@dirrm lib/perl5/site_perl/%%PERL_VER%%/Bio/DB/GFF/Adaptor/dbi
@@dirrm lib/perl5/site_perl/%%PERL_VER%%/Bio/DB/GFF/Adaptor
@@dirrm lib/perl5/site_perl/%%PERL_VER%%/Bio/DB/GFF
@@dirrm lib/perl5/site_perl/%%PERL_VER%%/Bio/DB
@@dirrm lib/perl5/site_perl/%%PERL_VER%%/Bio/Annotation
@@dirrm lib/perl5/site_perl/%%PERL_VER%%/Bio/AlignIO
@@dirrm lib/perl5/site_perl/%%PERL_VER%%/Bio
@@dirrm lib/perl5/site_perl/%%PERL_VER%%/%%PERL_ARCH%%/auto/Bio/Ext/Align
@@dirrm lib/perl5/site_perl/%%PERL_VER%%/%%PERL_ARCH%%/auto/Bio/Ext
@@dirrm lib/perl5/site_perl/%%PERL_VER%%/%%PERL_ARCH%%/auto/Bio
@@dirrm lib/perl5/site_perl/%%PERL_VER%%/%%PERL_ARCH%%/Bio/Ext
@@dirrm lib/perl5/site_perl/%%PERL_VER%%/%%PERL_ARCH%%/Bio
@


1.1
log
@Add p5-bioperl-devel 0.9.0,
a collection of Perl modules for
bioinformatics (developer's release).
@
text
@@

