head	1.16;
access;
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	RELEASE_8_3_0:1.15
	RELEASE_9_0_0:1.15
	RELEASE_7_4_0:1.15
	RELEASE_8_2_0:1.15
	RELEASE_6_EOL:1.15
	RELEASE_8_1_0:1.14
	RELEASE_7_3_0:1.13
	RELEASE_8_0_0:1.13
	RELEASE_7_2_0:1.12
	RELEASE_7_1_0:1.9
	RELEASE_6_4_0:1.9
	RELEASE_5_EOL:1.9
	RELEASE_7_0_0:1.9
	RELEASE_6_3_0:1.9
	PRE_XORG_7:1.9
	RELEASE_4_EOL:1.8
	RELEASE_6_2_0:1.8
	RELEASE_6_1_0:1.7
	RELEASE_5_5_0:1.7
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	RELEASE_5_3_0:1.5
	RELEASE_4_10_0:1.5
	RELEASE_5_2_1:1.5
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	RELEASE_4_8_0:1.5
	RELEASE_5_0_0:1.4
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	RELEASE_4_6_2:1.4
	RELEASE_4_6_1:1.4
	RELEASE_4_6_0:1.4
	RELEASE_5_0_DP1:1.4
	RELEASE_4_5_0:1.4
	RELEASE_4_4_0:1.4
	RELEASE_4_3_0:1.2
	RELEASE_4_2_0:1.1
	RELEASE_4_1_1:1.1
	RELEASE_4_1_0:1.1;
locks; strict;
comment	@# @;


1.16
date	2012.11.17.05.54.52;	author svnexp;	state Exp;
branches;
next	1.15;

1.15
date	2010.09.08.00.16.45;	author wen;	state Exp;
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1.14
date	2010.04.20.08.42.04;	author wen;	state Exp;
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next	1.13;

1.13
date	2009.08.13.17.00.04;	author miwi;	state Exp;
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1.12
date	2009.03.02.19.02.48;	author miwi;	state Exp;
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1.11
date	2008.12.25.19.56.07;	author miwi;	state Exp;
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1.10
date	2008.09.30.08.54.55;	author miwi;	state Exp;
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1.9
date	2007.03.11.03.21.17;	author linimon;	state Exp;
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1.8
date	2006.05.20.18.52.19;	author sem;	state Exp;
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1.7
date	2005.11.10.01.21.42;	author mnag;	state Exp;
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1.6
date	2004.11.06.03.55.37;	author kevlo;	state Exp;
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1.5
date	2003.02.14.23.21.23;	author naddy;	state Exp;
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1.4
date	2001.08.29.12.00.07;	author wjv;	state Exp;
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1.3
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1.2
date	2001.04.02.05.16.26;	author mharo;	state Exp;
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1.1
date	2000.07.10.03.21.00;	author steve;	state Exp;
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next	;


desc
@@


1.16
log
@Switch exporter over
@
text
@# New ports collection makefile for:	paml
# Date created:				7 July 2000
# Whom:					dbader@@eece.unm.edu
#
# $FreeBSD: head/biology/paml/Makefile 300895 2012-07-14 12:56:14Z beat $
#

PORTNAME=	paml
PORTVERSION=	4.4c
CATEGORIES=	biology
MASTER_SITES=	http://abacus.gene.ucl.ac.uk/software/
DISTNAME=	${PORTNAME}${PORTVERSION}

MAINTAINER=	wen@@FreeBSD.org
COMMENT=	Phylogenetic Analysis by Maximum Likelihood (PAML)

USE_GMAKE=	YES
WRKSRC=		${WRKDIR}/${PORTNAME}44/src
MAKE_ARGS=	CC="${CC}" CFLAGS="${CFLAGS}"

BINARIES=	baseml basemlg chi2 codeml evolver pamp yn00
DOC_FILES=	MCMCtreeDoc.pdf pamlDOC.pdf pamlFAQs.pdf pamlHistory.txt

do-install:
.for f in ${BINARIES}
	${INSTALL_PROGRAM} ${WRKSRC}/${f} ${PREFIX}/bin
.endfor
.if !defined(NOPORTDOCS)
	${MKDIR} ${DOCSDIR}
.for f in ${DOC_FILES}
	${INSTALL_DATA} ${WRKDIR}/${PORTNAME}44/doc/${f} ${DOCSDIR}
.endfor
.endif

.include <bsd.port.mk>
@


1.15
log
@- Update to 4.4c
@
text
@d5 1
a5 1
# $FreeBSD$
@


1.14
log
@- Update to 4.4a
- Update my mail address to FreeBSD
@
text
@d9 1
a9 1
PORTVERSION=	4.4a
@


1.13
log
@- Update to 4.3

PR:		137625
Submitted by:	Wen Heping <wenheping@@gmail.com> (maintainer)
@
text
@d9 1
a9 1
PORTVERSION=	4.3
d14 1
a14 1
MAINTAINER=	wenheping@@gmail.com
d18 1
a18 1
WRKSRC=		${WRKDIR}/${PORTNAME}43/src
d31 1
a31 1
	${INSTALL_DATA} ${WRKDIR}/${PORTNAME}43/doc/${f} ${DOCSDIR}
@


1.12
log
@- Update to 4.2b

PR:		132249
Submitted by:	Wen Heping <wenheping@@gmail.com>
@
text
@d9 1
a9 1
PORTVERSION=	4.2b
d18 1
a18 1
WRKSRC=		${WRKDIR}/${PORTNAME}42/src
d31 1
a31 1
	${INSTALL_DATA} ${WRKDIR}/${PORTNAME}42/doc/${f} ${DOCSDIR}
@


1.11
log
@- Update to 4.2

PR:		129895
Submitted by:	Wen Heping <wenheping@@gmail.com> (maintainer)
@
text
@d9 1
a9 1
PORTVERSION=	4.2
d18 1
a18 1
WRKSRC=		${WRKDIR}/${DISTNAME:S/.//g}/src
d31 1
a31 1
	${INSTALL_DATA} ${WRKDIR}/${DISTNAME:S/.//g}/doc/${f} ${DOCSDIR}
@


1.10
log
@- Update to 4.1
- Pass maintainership to submitter

PR:		127683
Submitted by:	Wen heping <wenheping@@gmail.com>
@
text
@d9 1
a9 1
PORTVERSION=	4.1
@


1.9
log
@Reset dbader@@eece.unm.edu due to maintainer-timeouts.

Hat:		portmgr
@
text
@d9 1
a9 1
PORTVERSION=	3.15
d14 1
a14 1
MAINTAINER=	ports@@FreeBSD.org
d18 1
a18 1
WRKSRC=		${WRKDIR}/${DISTNAME:S/b//g}/src
d22 1
d30 3
a32 2
	${INSTALL_DATA} ${WRKDIR}/${DISTNAME:S/b//g}/doc/pamlDOC.pdf \
		${DOCSDIR}
@


1.8
log
@- Update to 3.15

PR:		ports/96941
Submitted by:	Paul Schmehl <pauls@@utdallas.edu>
Approved by:	maintainer timeout
@
text
@d14 1
a14 1
MAINTAINER=	dbader@@eece.unm.edu
@


1.7
log
@Update to 3.14b
Update MASTER_SITES
Add SHA256
Remove extra TABS

PR:		88007
Submitted by:	Jean Milanez Melo <jmelo@@freebsdbrasil.com.br>
Approved by:	maintainer timeout, 14 days
@
text
@d9 1
a9 1
PORTVERSION=	3.14b
@


1.6
log
@Update to 3.14

PR: ports/72422
Submitted by: Choe, Cheng-Dae <whitekid@@gmail.com>
@
text
@d9 1
a9 1
PORTVERSION=	3.14
d11 1
a11 1
MASTER_SITES=	ftp://abacus.gene.ucl.ac.uk/pub/paml/
d17 2
a18 1
WRKSRC=		${WRKDIR}/${DISTNAME}/src
d25 1
a25 1
		${INSTALL_PROGRAM} ${WRKSRC}/${f} ${PREFIX}/bin
d28 3
a30 3
		${MKDIR} ${DOCSDIR}
		${INSTALL_DATA} ${WRKDIR}/${DISTNAME}/doc/pamlDOC.pdf \
			${DOCSDIR}
@


1.5
log
@* Update to 3.13.

PR:		48255
Submitted by:	David A. Bader <dbader@@eece.unm.edu>

* Also honor CC/CFLAGS.
@
text
@d9 1
a9 1
PORTVERSION=	3.13
d20 1
a20 1
BINARIES=	baseml basemlg chi2 codeml evolver mcmctree pamp yn00
@


1.4
log
@- Update to version 3.1

PR:		30176
Submitted by:	David A. Bader <dbader@@eece.unm.edu> (MAINTAINER)
@
text
@d5 1
a5 1
# $FreeBSD: ports/biology/paml/Makefile,v 1.3 2001/07/03 08:17:14 wjv Exp $
d9 1
a9 1
PORTVERSION=	3.1
d12 1
a12 2
DISTNAME=	paml3.1
EXTRACT_SUFX=	.tar.Z
d15 1
d18 1
d20 1
a20 2
BINARIES=	baseml basemlg chi2 codeml codemlsites evolver mcmctree \
		pamp yn00
@


1.3
log
@Update to version 3.04

PR:		28614
Submitted by:	David A. Bader <dbader@@eece.unm.edu> (MAINTAINER)
@
text
@d5 1
a5 1
# $FreeBSD: ports/biology/paml/Makefile,v 1.2 2001/04/02 05:16:26 mharo Exp $
d9 1
a9 1
PORTVERSION=	3.04
d12 1
a12 1
DISTNAME=	paml3.0d
d27 1
a27 1
		${MKDIR} ${PREFIX}/share/doc/${PORTNAME}
d29 1
a29 1
			${PREFIX}/share/doc/${PORTNAME}
@


1.2
log
@update to 3.03

PR:		26094
Submitted by:	    maintainer
@
text
@d5 1
a5 1
# $FreeBSD: ports/biology/paml/Makefile,v 1.1 2000/07/10 03:21:00 steve Exp $
d9 1
a9 1
PORTVERSION=	3.03
d12 1
a12 1
DISTNAME=	paml3.0c
@


1.1
log
@Add paml version 3.01.
A set of utilities for performing Phylogenetic Analysis by Maximum
Likelihood (PAML).

PR:		19753
Submitted by:	David A. Bader <dbader@@cielo.eece.unm.edu>
@
text
@d5 1
a5 1
# $FreeBSD$
d9 1
a9 1
PORTVERSION=	3.01
d12 1
a12 1
DISTNAME=	paml3.0a
d17 1
a17 1
NO_WRKSUBDIR=	yes
d28 1
a28 1
		${INSTALL_DATA} ${WRKSRC}/pamlDOC.pdf \
@

