head	1.25;
access;
symbols
	RELEASE_8_3_0:1.24
	RELEASE_9_0_0:1.24
	RELEASE_7_4_0:1.24
	RELEASE_8_2_0:1.24
	RELEASE_6_EOL:1.24
	RELEASE_8_1_0:1.24
	RELEASE_7_3_0:1.24
	RELEASE_8_0_0:1.24
	RELEASE_7_2_0:1.23
	RELEASE_7_1_0:1.22
	RELEASE_6_4_0:1.22
	RELEASE_5_EOL:1.18
	RELEASE_7_0_0:1.17
	RELEASE_6_3_0:1.17
	PRE_XORG_7:1.16
	RELEASE_4_EOL:1.16
	RELEASE_6_2_0:1.13
	RELEASE_6_1_0:1.13
	RELEASE_5_5_0:1.13
	RELEASE_6_0_0:1.11
	RELEASE_5_4_0:1.9
	RELEASE_4_11_0:1.9
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	RELEASE_5_2_1:1.6
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	RELEASE_4_6_2:1.4
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	RELEASE_5_0_DP1:1.4
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	RELEASE_4_3_0:1.3
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	RELEASE_4_1_1:1.1
	RELEASE_4_1_0:1.1;
locks; strict;
comment	@# @;


1.25
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desc
@@


1.25
log
@Switch exporter over
@
text
@# New ports collection makefile for:	phylip
# Date created:				4 July 2000
# Whom:					dbader@@eece.unm.edu
#
# $FreeBSD: head/biology/phylip/Makefile 300895 2012-07-14 12:56:14Z beat $
#

PORTNAME=	phylip
PORTVERSION=	3.69
PORTEPOCH=	1
CATEGORIES=	biology
MASTER_SITES=	http://evolution.gs.washington.edu/phylip/download/

MAINTAINER=	ports@@FreeBSD.org
COMMENT=	A Phylogeny Inference Package

BUILD_DEPENDS=	bash:${PORTSDIR}/shells/bash

BUILD_WRKSRC=	${WRKSRC}/src
INSTALL_WRKSRC=	${WRKSRC}/src

USE_XORG=	x11 xaw xt
USE_GMAKE=	yes
MAKE_ARGS=	CC="${CC}" CFLAGS="${CFLAGS}" \
		DFLAGS="${CFLAGS} -DX -I${LOCALBASE}/include" \
		DLIBS="-L${LOCALBASE}/lib -lX11 -lXaw -lXt -lm"

PORTDOCS=	*

post-install:
	@@cd ${WRKSRC}/exe && \
		${FIND} . -not -type d -not -name 'font*' -exec ${INSTALL_PROGRAM} "{}" "${PREFIX}/bin/{}" \;
	${MKDIR} ${DATADIR}
	@@cd ${WRKSRC}/exe && \
		${FIND} . -not -type d -name 'font*' -exec ${INSTALL_DATA} "{}" "${DATADIR}/{}" \;
.if !defined(NOPORTDOCS)
	${MKDIR} ${DOCSDIR}
	@@cd ${WRKSRC}/doc && \
		${FIND} . -not -type d -exec ${INSTALL_DATA} "{}" "${DOCSDIR}/{}" \;
.endif

.include <bsd.port.mk>
@


1.24
log
@-Update to 3.69

PR:		138813
Submitted by:	Ports Fury
Feature safe:	yes
@
text
@d5 1
a5 1
# $FreeBSD$
@


1.23
log
@- Update X.org ports to 7.4+ (few ports are more recent than the katamari).
- Bump PORTREVISION for all ports depending on libglut since the shlib
version number went from 4 to 3.
- Bump PORTREVISION for all ports depending on libXaw as libXaw.so.8 isn't
installed anymore.
- Couple of ports fixes (mostly missing xorg components added to USE_XORG).
@
text
@d9 1
a9 2
PORTVERSION=	3.68
PORTREVISION=	1
d12 1
a12 4
MASTER_SITES=	ftp://evolution.genetics.washington.edu/pub/phylip/ \
		http://bioinformatics.weizmann.ac.il/software/linkage_and_mapping/phylip/ \
		${MASTER_SITE_GENTOO}
MASTER_SITE_SUBDIR=	distfiles
d19 3
d24 2
a25 5
BUILD_WRKSRC=	${WRKSRC}/src
INSTALL_WRKSRC=	${BUILD_WRKSRC}
CFLAGS+=	-I${LOCALBASE}/include
MAKE_ARGS=	CC="${CC} ${CFLAGS}" \
		DC="${CC} -DX ${CFLAGS}" \
@


1.22
log
@- Fix build

Reported by:	QA Tindie
@
text
@d10 1
@


1.21
log
@- Update to 3.68
@
text
@d26 1
a26 1

d28 1
a28 1
		DC="${CC} -DX -I${LOCALBASE}/include ${CFLAGS}" \
@


1.20
log
@- Fix build depends
- Bump port revision

Reported by:	pointyhat via pav
@
text
@d9 1
a9 2
PORTVERSION=	3.67
PORTREVISION=	1
d29 1
a29 1
		DLIBS="-L${LOCALBASE}/lib -lX11 -lXaw -lXt"
@


1.19
log
@- Update to 3.67
- Sanitize Makefile a little bit
@
text
@d10 1
d21 2
@


1.18
log
@- Remove unneeded dependency from gtk12/gtk20 [1]
- Remove USE_XLIB/USE_X_PREFIX/USE_XPM in favor of USE_XORG
- Remove X11BASE support in favor of LOCALBASE or PREFIX
- Use USE_LDCONFIG instead of INSTALLS_SHLIB
- Remove unneeded USE_GCC 3.4+

Thanks to all Helpers:
	Dmitry Marakasov, Chess Griffin, beech@@, dinoex, rafan, gahr,
	ehaupt, nox, itetcu, flz, pav

PR:		116263
Tested on:	pointyhat
Approved by:	portmgr (pav)
@
text
@d9 1
a9 2
PORTVERSION=	3.66
PORTREVISION=	2
a19 1
WRKSRC=		${WRKDIR}/${PORTNAME}${PORTVERSION}
d21 1
d23 1
d31 1
a31 3
do-install:
	@@cd ${BUILD_WRKSRC} && ${MAKE} install

a33 1

a36 2

post-install:
@


1.17
log
@- Welcome X.org 7.2 \o/.
- Set X11BASE to ${LOCALBASE} for recent ${OSVERSION}.
- Bump PORTREVISION for ports intalling files in ${X11BASE}.
@
text
@d10 1
a10 1
PORTREVISION=	1
d22 1
a22 1
USE_XLIB=	yes
d26 2
a27 2
		DC="${CC} -DX -I${X11BASE}/include ${CFLAGS}" \
		DLIBS="-L${X11BASE}/lib -lX11 -lXaw -lXt"
@


1.16
log
@Update to 3.66

PR:		ports/108434
Submitted by:	Marcelo Araujo
@
text
@d10 1
@


1.15
log
@Reset dbader@@ece.unm.edu due to timeouts and no response to email.

Hat:		portmgr
@
text
@d9 1
a9 1
PORTVERSION=	3.65
@


1.14
log
@- Respect X11BASE

Approved by:	maintainer (implicit)
@
text
@d17 1
a17 1
MAINTAINER=	dbader@@ece.unm.edu
@


1.13
log
@Put PORTEPOCH back.

Reported by:	chkversion
@
text
@d26 1
a26 1
		GLIBS="-L${X11BASE}/lib -lX11 -lm"
@


1.12
log
@Update to 3.65.

PR:		ports/92182
Submitted by:	"Choe, Cheng-Dae" <whitekid@@gmail.com>
Approved by:	dbader@@ece.unm.edu (maintainer, timeout 14 days)
@
text
@d10 1
@


1.11
log
@Bump PORTEPOCH. 3.6 < 3.62

Pointyhat to:	arved
@
text
@d9 1
a9 2
PORTVERSION=	3.6
PORTEPOCH=	1
d19 1
d27 1
a27 16
BINARIES=	clique consense contml contrast dnacomp dnadist dnainvar \
		dnaml dnamlk dnamove dnapars dnapenny dollop dolmove \
		dolpenny drawgram drawtree factor fitch gendist kitsch \
		mix move neighbor pars penny proml promlk protdist \
		protpars restdist restml retree seqboot treedist
DOCFILES=	clique.html consense.html contchar.html contml.html \
		contrast.html discrete.html distance.html dnacomp.html \
		dnadist.html dnainvar.html dnaml.html dnamlk.html \
		dnamove.html dnapars.html dnapenny.html dollop.html \
		dolmove.html dolpenny.html draw.html drawgram.html \
		drawtree.html factor.html fitch.html gendist.html \
		kitsch.html main.html mix.html move.html neighbor.html \
		pars.html penny.html phylip.gif proml.html promlk.html \
		protdist.html protpars.html restdist.html restml.html \
		retree.html seqboot.html sequence.html treedist.html
FONTFILES=	font1 font2 font3 font4 font5 font6
d30 5
a34 3
.for f in ${BINARIES}
	${INSTALL_PROGRAM} ${BUILD_WRKSRC}/${f} ${PREFIX}/bin
.endfor
d36 4
a39 3
.for font in ${FONTFILES}
	${INSTALL_DATA} ${BUILD_WRKSRC}/${font} ${DATADIR}
.endfor
d42 2
a43 3
.for f in ${DOCFILES}
	${INSTALL_DATA} ${WRKDIR}/${DISTNAME}/doc/${f} ${DOCSDIR}
.endfor
@


1.10
log
@Upgrade to 3.62

PR:		79234
Submitted by:	David A. Bader <dbader@@ece.unm.edu>
@
text
@d10 1
@


1.9
log
@- Add some sites I found with Google, as old master site don't have this
  version anymore

Reported by:	pointyhat via krion
@
text
@d9 1
a9 1
PORTVERSION=	3.62
@


1.8
log
@- Update to 3.62
- Install font files

PR:		ports/72212
Submitted by:	Fernan Aguero <fernan@@iib.unsam.edu.ar>
Approved by:	David A. Bader <dbader@@ece.unm.edu> (maintainer)
@
text
@d11 4
a14 1
MASTER_SITES=	ftp://evolution.genetics.washington.edu/pub/phylip/
@


1.7
log
@- Update to 3.6.b

PR:		ports/62142
Submitted by:	David A. Bader <dbader@@ece.unm.edu> (maintainer)
@
text
@d9 1
a9 1
PORTVERSION=	3.6.b
d11 1
a11 3
MASTER_SITES=	ftp://evolution.genetics.washington.edu/pub/phylip/phylip36/
DISTNAME=	${PORTNAME}
DIST_SUBDIR=	${PORTNAME}-${PORTVERSION}
d38 1
d43 4
@


1.6
log
@De-pkg-comment.
@
text
@d9 1
a9 1
PORTVERSION=	3.6.a3
a12 1
EXTRACT_SUFX=	.tar.Z
d15 1
a15 1
MAINTAINER=	dbader@@eece.unm.edu
@


1.5
log
@Update to version 3.6.a3.

PR:		41412
Submitted by:	David A. Bader <dbader@@eece.unm.edu>

Additional clean-up:
* Respect CC, CFLAGS, X11BASE.
* Use versioned DIST_SUBDIR.

Approved by:	maintainer
@
text
@d17 1
@


1.4
log
@- Update to version 3.6.a2.1 - since the distribution tarball hadn't been
  renamed between versions, this port failed checksum.
- Apply some whitespace edits and cut pkg-descr down to size to placate
  portlint.

Reported by:	Jason Stajich <jason@@chg.mc.duke.edu>
Approved by:	No response from MAINTAINER
@
text
@d5 1
a5 1
# $FreeBSD: ports/biology/phylip/Makefile,v 1.3 2001/04/11 03:51:34 steve Exp $
d9 1
a9 1
PORTVERSION=	3.6.a2.1
d14 1
d20 4
@


1.3
log
@This port require X libraries to build/run.
@
text
@d5 1
a5 1
# $FreeBSD: ports/biology/phylip/Makefile,v 1.2 2001/04/02 05:10:14 mharo Exp $
d9 1
a9 1
PORTVERSION=	3.6
a12 1
WRKSRC=		${WRKDIR}/${DISTNAME}/src
d18 1
a18 1
NO_WRKSUBDIR=	yes
d21 1
a21 1
		dnaml dnamlk dnamove dnapars dnapenny dolmove dollop \
d23 2
a24 2
		mix move neighbor pars penny proml protdist protpars \
		restdist restml retree seqboot treedist
d32 3
a34 3
		pars.html penny.html phylip.gif proml.html protdist.html \
		protpars.html restdist.html restml.html retree.html \
		seqboot.html sequence.html treedist.html
d38 1
a38 1
	${INSTALL_PROGRAM} ${WRKSRC}/${f} ${PREFIX}/bin
d41 1
a41 1
	${MKDIR} ${PREFIX}/share/doc/${PORTNAME}
d43 1
a43 2
	${INSTALL_DATA} ${WRKDIR}/${DISTNAME}/doc/${f} \
	${PREFIX}/share/doc/${PORTNAME}
@


1.2
log
@updated port biology/phylip from vers 3.5 to 3.6

PR:		26146
Submitted by:	    "David A. Bader" <dbader@@eece.unm.edu>
@
text
@d5 1
a5 1
# $FreeBSD: ports/biology/phylip/Makefile,v 1.1 2000/07/10 03:25:43 steve Exp $
d18 1
@


1.1
log
@Adding phylip version 3.5.

This is a FREE package of programs for inferring phylogenies and carrying
out certain related tasks.  At present it contains 30 programs, which carry
out different algorithms on different kinds of data.

PR:		19705
Submitted by:	David A. Bader <dbader@@cielo.eece.unm.edu>
@
text
@d5 1
a5 1
# $FreeBSD$
d9 1
a9 1
PORTVERSION=	3.5
d11 1
a11 1
MASTER_SITES=	ftp://evolution.genetics.washington.edu/pub/phylip/
d13 1
d23 12
a34 10
		mix move neighbor penny protdist protpars restml retree \
		seqboot
DOCFILES=	README clique.doc consense.doc contchar.doc contml.doc \
		contrast.doc discrete.doc distance.doc dnacomp.doc dnadist.doc \
		dnainvar.doc dnaml.doc dnamlk.doc dnamove.doc dnapars.doc \
		dnapenny.doc dollop.doc dolmove.doc dolpenny.doc draw.doc \
		drawgram.doc drawtree.doc factor.doc fitch.doc gendist.doc \
		kitsch.doc main.doc makeinf.doc mix.doc move.doc neighbor.doc \
		penny.doc protdist.doc protml.doc protpars.doc restml.doc \
		retree.doc seqboot.doc sequence.doc
d43 2
a44 1
	${INSTALL_DATA} ${WRKSRC}/${f} ${PREFIX}/share/doc/${PORTNAME}
@

