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date	2013.03.19.11.42.41;	author svnexp;	state Exp;
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date	2012.09.27.09.59.25;	author makc;	state Exp;
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@## SVN ## Exported commit - http://svnweb.freebsd.org/changeset/base/314580
## SVN ## CVS IS DEPRECATED: http://wiki.freebsd.org/CvsIsDeprecated
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@# Created by: Jason Bacon <jwbacon@@tds.net>
# $FreeBSD: head/biology/plinkseq/Makefile 314580 2013-03-18 15:14:27Z vanilla $

PORTNAME=	plinkseq
PORTVERSION=	0.08
PORTREVISION=	1
CATEGORIES=	biology science
MASTER_SITES=	http://atgu.mgh.harvard.edu/${PORTNAME}/dist/version-${PORTVERSION}/

MAINTAINER=	jwbacon@@tds.net
COMMENT=	Toolset for working with human genetic variation data

LICENSE=	GPLv2

LIB_DEPENDS=	protobuf:${PORTSDIR}/devel/protobuf

USE_DOS2UNIX=	yes
USE_LDCONFIG=	yes
GNU_CONFIGURE=	yes
CONFIGURE_ARGS+=--with-protobuf=${LOCALBASE}

post-patch:
	${REINPLACE_CMD} -e 's|PF_INET|AF_INET|g' ${WRKSRC}/browser/mongoose.c
	${REINPLACE_CMD} -e 's|-ldl||g' \
		${WRKSRC}/browser/Makefile.in \
		${WRKSRC}/client/Makefile.in \
		${WRKSRC}/index/Makefile.in

.include <bsd.port.mk>
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# $FreeBSD: head/biology/plinkseq/Makefile 304954 2012-09-27 09:59:25Z makc $
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@SVN rev 304954 on 2012-09-27 09:59:25Z by makc

Add new ports biology/plink [1] and biology/plinkseq [2]:

PLINK is a free, open-source whole genome association analysis toolset.
PLINK/SEQ is an open-source C/C++ library for working with human
genetic variation data.

PR:		ports/171918 [1]
PR:		ports/171922 [2]
Submitted by:	Jason Bacon <jwbacon at tds.net>
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# $FreeBSD$
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