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1.10
date	2012.11.17.05.54.53;	author svnexp;	state Exp;
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1.9
date	2012.10.08.03.17.02;	author wen;	state Exp;
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1.8
date	2012.06.10.18.41.15;	author swills;	state Exp;
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1.7
date	2011.08.11.11.37.18;	author wen;	state Exp;
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1.6
date	2011.06.25.07.21.19;	author nivit;	state Exp;
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1.5
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1.4
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1.3
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1.2
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1.1
date	2009.06.22.12.46.56;	author miwi;	state Exp;
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desc
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1.10
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@Switch exporter over
@
text
@# Created by: Wen Heping <wenheping@@gmail.com>
# $FreeBSD: head/biology/pycogent/Makefile 305516 2012-10-08 03:17:02Z wen $

PORTNAME=	pycogent
PORTVERSION=	1.5.3
CATEGORIES=	biology python
MASTER_SITES=	SF/${PORTNAME}/PyCogent/${PORTVERSION}
DISTNAME=	PyCogent-${PORTVERSION}
EXTRACT_SUFX=	.tgz

MAINTAINER=	wen@@FreeBSD.org
COMMENT=	A toolkit for statistical analysis of biological sequences

BUILD_DEPENDS=	${PYNUMPY} \
		${LOCALBASE}/bin/cython:${PORTSDIR}/lang/cython \
		${LOCALBASE}/bin/sphinx-build:${PORTSDIR}/textproc/py-sphinx \
		${PYTHON_PKGNAMEPREFIX}sqlalchemy06>=0.5:${PORTSDIR}/databases/py-sqlalchemy06
RUN_DEPENDS:=	${BUILD_DEPENDS}

USE_PYTHON=		yes
USE_PYDISTUTILS=	yes
PYDISTUTILS_PKGNAME=	cogent

.include <bsd.port.mk>
@


1.9
log
@SVN rev 305516 on 2012-10-08 03:17:02Z by wen

- Update to 1.5.3
- Trim Makefile headers
@
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@d2 1
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# $FreeBSD$
@


1.8
log
@- Convert all remaining instances of BUILD_DEPENDS=${RUN_DEPENDS} or
  RUN_DEPENDS=${BUILD_DEPENDS} to use := which portlint has warned
  about for a while.

PR:		ports/168208
Approved by:	portmgr (miwi)
@
text
@d1 1
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# New ports collection makefile for:	pycogent
# Date created:		20 June, 2009
# Whom:			Wen Heping <wenheping@@gmail.com>
#
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#
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PORTVERSION=	1.5.1
@


1.7
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@- Update to 1.5.1
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RUN_DEPENDS=	${BUILD_DEPENDS}
@


1.6
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@- Fix *_DEPENDS after the repocopy of databases/py-sqlalchemy
  (This port doesn't yet support SQLAlchemy 0.7.X)
- Bump PORTREVISION
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PORTVERSION=	1.5
PORTREVISION=	1
a26 1
PYDISTUTILS_PKGVERSION=	1.5.0
@


1.5
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@- Update to 1.5.0
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		${PYTHON_PKGNAMEPREFIX}sqlalchemy>=0.5:${PORTSDIR}/databases/py-sqlalchemy
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1.4
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@- Update to 1.4.1
@
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@d9 1
a9 1
PORTVERSION=	1.4.1
d27 1
@


1.3
log
@- Update to 1.4
- Update my mail address to FreeBSD
@
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@d9 1
a9 1
PORTVERSION=	1.4
@


1.2
log
@- Switch SourceForge ports to the new File Release System: categories starting with B,C
@
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@d9 1
a9 1
PORTVERSION=	1.3.1
d15 1
a15 1
MAINTAINER=	wenheping@@gmail.com
@


1.1
log
@PyCogent is a software library for genomic biology. It is a fully integrated
and thoroughly tested framework for: controlling third-party applications;
devising workflows; querying databases; conducting novel probabilistic
analyses of biological sequence evolution; and generating publication quality
graphics. It is distinguished by many unique built-in capabilities (such as
true codon alignment) and the frequent addition of entirely new methods for
the analysis of genomic data.

WWW:	http://pycogent.sourceforge.net/

PR:		ports/135863
Submitted by:	Wen Heping <wenheping at gmail.com>
@
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@d11 1
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MASTER_SITES=	SF
@

