head	1.42;
access;
symbols
	RELEASE_8_3_0:1.39
	RELEASE_9_0_0:1.38
	RELEASE_7_4_0:1.37
	RELEASE_8_2_0:1.37
	RELEASE_6_EOL:1.37
	RELEASE_8_1_0:1.36
	RELEASE_7_3_0:1.35
	RELEASE_8_0_0:1.34
	RELEASE_7_2_0:1.33
	RELEASE_7_1_0:1.32
	RELEASE_6_4_0:1.32
	RELEASE_5_EOL:1.32
	RELEASE_7_0_0:1.30
	RELEASE_6_3_0:1.30
	PRE_XORG_7:1.28
	RELEASE_4_EOL:1.27
	RELEASE_6_2_0:1.27
	RELEASE_6_1_0:1.23
	RELEASE_5_5_0:1.23
	RELEASE_6_0_0:1.21
	RELEASE_5_4_0:1.21
	RELEASE_4_11_0:1.19
	RELEASE_5_3_0:1.17
	RELEASE_4_10_0:1.16
	RELEASE_5_2_1:1.11
	RELEASE_5_2_0:1.11
	RELEASE_4_9_0:1.10
	RELEASE_5_1_0:1.8
	RELEASE_4_8_0:1.7
	RELEASE_5_0_0:1.6
	RELEASE_4_7_0:1.5;
locks; strict;
comment	@# @;


1.42
date	2012.11.17.05.54.53;	author svnexp;	state Exp;
branches;
next	1.41;

1.41
date	2012.08.04.22.52.02;	author kwm;	state Exp;
branches;
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1.40
date	2012.06.01.05.16.29;	author dinoex;	state Exp;
branches;
next	1.39;

1.39
date	2012.02.16.02.30.10;	author maho;	state Exp;
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1.38
date	2011.05.09.04.36.54;	author maho;	state Exp;
branches;
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1.37
date	2010.09.16.21.48.04;	author maho;	state Exp;
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1.36
date	2010.03.28.06.31.39;	author dinoex;	state Exp;
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1.35
date	2010.02.05.11.34.38;	author dinoex;	state Exp;
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1.34
date	2009.06.08.22.30.45;	author miwi;	state Exp;
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1.33
date	2009.01.23.16.27.17;	author flz;	state Exp;
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1.32
date	2008.03.27.11.20.17;	author miwi;	state Exp;
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1.31
date	2008.03.07.02.38.09;	author maho;	state Exp;
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1.30
date	2007.09.02.07.16.04;	author rafan;	state Exp;
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1.29
date	2007.05.19.20.00.27;	author flz;	state Exp;
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1.28
date	2007.02.09.00.11.54;	author maho;	state Exp;
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1.27
date	2006.09.17.11.51.56;	author maho;	state Exp;
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1.26
date	2006.09.17.01.32.58;	author kris;	state Exp;
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1.25
date	2006.07.01.05.06.21;	author maho;	state Exp;
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1.24
date	2006.05.03.23.26.34;	author edwin;	state Exp;
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1.23
date	2006.01.12.12.54.05;	author sem;	state Exp;
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1.22
date	2005.10.10.09.08.22;	author maho;	state Exp;
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1.21
date	2005.03.26.22.20.19;	author kris;	state Exp;
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1.20
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1.19
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1.18
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1.17
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1.16
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1.15
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1.1
date	2002.08.13.11.53.43;	author perky;	state Exp;
branches;
next	;


desc
@@


1.42
log
@Switch exporter over
@
text
@# New ports collection makefile for:	pymol
# Date created:			July 18, 2002
# Whom:				Nakata Maho <chat95@@mbox.kyoto-inet.or.jp>
#
# $FreeBSD: head/biology/pymol/Makefile 302037 2012-08-04 22:52:02Z kwm $

PORTNAME=	pymol
PORTVERSION=	${VERSION}.${SVNREVISION}
PORTREVISION=	2
CATEGORIES=	biology python
MASTER_SITES=	${MASTER_SITE_LOCAL:S|%SUBDIR%|maho/pymol|}

MAINTAINER=	maho@@FreeBSD.org
COMMENT=	Free and Open-Source molecular modeling system

BUILD_DEPENDS=	${PYNUMERIC}
RUN_DEPENDS=	${PYNUMERIC} \
		${PYTHON_SITELIBDIR}/Pmw:${PORTSDIR}/x11-toolkits/py-Pmw
LIB_DEPENDS=	png15:${PORTSDIR}/graphics/png \
		freetype.9:${PORTSDIR}/print/freetype2

VERSION=	1.5.0.1
SVNREVISION=	3978

USE_BZIP2=	yes
WRKSRC=		${WRKDIR}/pymol-${PORTVERSION}
USE_GL=		glut glew
USE_GMAKE=	yes
USE_PYTHON=	yes
PLIST_SUB=	PYMOL_VER=${VERSION} PYTHON_VER=${PYTHON_VER}

pre-build:
	@@${REINPLACE_CMD} -e "s+%%LOCALBASE%%+${LOCALBASE}+"  ${WRKSRC}/setup.py

#do build process actually installs some files, so omitted.
do-build:

do-install:
	@@(cd ${BUILD_WRKSRC}; ${SETENV} ${MAKE_ENV} ${PYTHON_CMD} ${PYSETUP} install)
	@@(cd ${BUILD_WRKSRC}; ${SETENV} ${MAKE_ENV} ${PYTHON_CMD} setup2.py install)
	@@${INSTALL_SCRIPT} ${WRKSRC}/pymol ${PREFIX}/bin/pymol

#maintainance
do-fetch-svn:
	#svn ls https://pymol.svn.sourceforge.net/svnroot/pymol/tags
	#http://pymol.svn.sourceforge.net/viewvc/pymol/trunk/
	${RM} -rf pymol-${VERSION}.${SVNREVISION}
	svn -r ${SVNREVISION} export http://pymol.svn.sourceforge.net/svnroot/pymol/trunk/pymol pymol-${VERSION}.${SVNREVISION}
	tar cvfj pymol-${VERSION}.${SVNREVISION}.tar.bz2 pymol-${VERSION}.${SVNREVISION}
	scp pymol-${VERSION}.${SVNREVISION}.tar.bz2 freefall.freebsd.org:public_distfiles/pymol/

.include <bsd.port.mk>
@


1.41
log
@SVN rev 302037 on 2012-08-04 22:52:02Z by kwm

Switch from libglut to freeglut and retire libglut. Libglut hasn't been
developed in years and has been dropped from the MESA 8.0 distribution.
Freeglut is a rewrite of glut and is actively developed and is used by
many linux distributions instead of libglut.

Bump all ports that directly depend on libglut because of the shlib version
change.

There are some extra items in this patch.

*) Because freeglut doesn't have the same dependancies as libglut, some ports
	need extra dependencies added to USE_XORG to make them build.
*) Mark graphics/f90gl broken, f90gl depends on a header that is only shipped
	with libglut.
*) Remove option for libglut/freeglut selection in games/cake, only freeglut
	remains now.
*) While here fix a png related build issue games/vegastrike.

Thanks to miwi for running the exp-run.

Approved by:	portmgr (miwi)

Collaboration with:	zeising@@
Obtained from:	xorg-dev staging area.
@
text
@d5 1
a5 1
# $FreeBSD$
@


1.40
log
@- update png to 1.5.10
@
text
@d9 1
a9 1
PORTREVISION=	1
@


1.39
log
@update to 1.5.0.1.
@
text
@d9 1
d19 1
a19 1
LIB_DEPENDS=	png.6:${PORTSDIR}/graphics/png \
@


1.38
log
@update to 1.4.1

Notified by: Alvin Oga
@
text
@d21 2
a22 2
VERSION=	1.4.1
SVNREVISION=	3946
d29 1
a29 1
PLIST_SUB=	PYTHON_VER=${PYTHON_VER}
d34 1
a35 1
	@@cd ${BUILD_WRKSRC}; ${SETENV} ${MAKE_ENV} ${PYTHON_CMD} ${PYSETUP} build
d38 2
a39 2
	@@(cd ${BUILD_WRKSRC}; ${SETENV} ${MAKE_ENV} ${PYTHON_CMD} ${PYSETUP} install \
	; ${SETENV} ${MAKE_ENV} ${PYTHON_CMD} setup2.py install)
@


1.37
log
@Update to  1.3r1.3913.

Actually the version number is from SVN, and maho@@ manually
checked out from SVN.
The source archive is not distributed as tar ball.
@
text
@d21 2
a22 2
VERSION=	1.3r1
SVNREVISION=	3913
d26 1
a26 1
USE_GL=		glut
d47 1
a47 1
	svn -r ${SVNREVISION} export https://pymol.svn.sourceforge.net/svnroot/pymol/trunk/pymol pymol-${VERSION}.${SVNREVISION}
@


1.36
log
@- update to 1.4.1
Reviewed by:	exp8 run on pointyhat
Supported by:	miwi
@
text
@d8 1
a8 2
PORTVERSION=	1.0r2
PORTREVISION=	5
d21 4
d42 9
@


1.35
log
@- update to jpeg-8
@
text
@d9 1
a9 1
PORTREVISION=	4
d19 1
a19 1
LIB_DEPENDS=	png.5:${PORTSDIR}/graphics/png \
@


1.34
log
@- Update lang/python26 and make Python 2.6.2 to the default Python version

Tested by:	3 pointyhat runs
Thanks to:	pav, gahr, lwhsu, mva, amdmi3
@
text
@d9 1
a9 1
PORTREVISION=	3
@


1.33
log
@- Update X.org ports to 7.4+ (few ports are more recent than the katamari).
- Bump PORTREVISION for all ports depending on libglut since the shlib
version number went from 4 to 3.
- Bump PORTREVISION for all ports depending on libXaw as libXaw.so.8 isn't
installed anymore.
- Couple of ports fixes (mostly missing xorg components added to USE_XORG).
@
text
@d9 1
a9 1
PORTREVISION=	2
d26 1
@


1.32
log
@- Add missing dependens
- Bump PORTREVISION

Submitted by:	pointyhat via pav
@
text
@d9 1
a9 1
PORTREVISION=	1
d19 1
a19 2
LIB_DEPENDS=	glut.4:${PORTSDIR}/graphics/libglut \
		png.5:${PORTSDIR}/graphics/png \
d23 1
@


1.31
log
@Update to 1.0r2.
@
text
@d9 1
d20 2
a21 1
		png.5:${PORTSDIR}/graphics/png
@


1.30
log
@- Chase x11-toolkits/pmw renamed to x11-toolkits/py-Pmw

PR:		115302
@
text
@d8 1
a8 2
PORTVERSION=	0.99rc6
PORTREVISION=	2
d10 1
a10 4
MASTER_SITES=	${MASTER_SITE_SOURCEFORGE}
MASTER_SITE_SUBDIR=	pymol
DISTNAME=	pymol-${PORTVERSION:S/./_/}-src
EXTRACT_SUFX=	.tgz
d25 2
a26 1
.include <bsd.port.pre.mk>
d28 2
a29 22
.if ${ARCH} == "ia64"
BROKEN=		Does not build on ${ARCH}
.endif

.if ${ARCH} == "sparc64" || ${ARCH} == "amd64" || ${ARCH} == "ia64"
PICFLAG?=	-fPIC
.else
PICFLAG?=	-fpic
.endif

pre-patch:
	@@${CP} ${WRKSRC}/setup/Rules.linux ${WRKSRC}/Rules.make

post-patch:
	@@${CP} ${WRKSRC}/setup/pymol.com.linux-rh7x ${WRKSRC}/pymol
	@@${REINPLACE_CMD} -e 's,@@PREFIX@@,${PREFIX},g' -e 's,@@LOCALBASE@@,${LOCALBASE},g' ${WRKSRC}/pymol
	${REINPLACE_CMD} -e 's,@@PYTHON_VERSION@@,${PYTHON_VERSION},g' \
		-e 's,@@LOCALBASE@@,${LOCALBASE},g' \
		-e 's,@@X11BASE@@,${X11BASE},g' \
		-e 's,@@CFLAGS@@,${CFLAGS},g' \
		-e 's,@@CC@@,${CC},g' \
		-e 's,@@PICFLAG@@,${PICFLAG},g' ${WRKSRC}/Rules.make
d32 2
a34 10
	@@${MKDIR} ${PREFIX}/share/pymol
	@@${TAR} -C ${WRKSRC} -chf - data modules test | \
		${TAR} -xf - -C ${PREFIX}/share/pymol
.if !defined(NOPORTDOCS)
	@@${MKDIR} ${EXAMPLESDIR}
	@@${TAR} -C ${WRKSRC}/examples --exclude package -chf - . | \
		${TAR} -xf - -C ${EXAMPLESDIR}
.endif
	@@${PYTHON_CMD} ${PYTHON_LIBDIR}/compileall.py ${PREFIX}/share/pymol/modules
	@@${PYTHON_CMD} -O ${PYTHON_LIBDIR}/compileall.py ${PREFIX}/share/pymol/modules
d36 1
a36 1
.include <bsd.port.post.mk>
@


1.29
log
@- Welcome X.org 7.2 \o/.
- Set X11BASE to ${LOCALBASE} for recent ${OSVERSION}.
- Bump PORTREVISION for ports intalling files in ${X11BASE}.
@
text
@d9 1
a9 1
PORTREVISION=	1
d21 1
a21 1
		${PYTHON_SITELIBDIR}/Pmw:${PORTSDIR}/x11-toolkits/pmw
@


1.28
log
@Update to 0.99rc6.

PR:		108940
Submitted by:	CHAO Shin
@
text
@d9 1
@


1.27
log
@Fix build on amd64

Submitted by:	kris
@
text
@d8 1
a8 1
PORTVERSION=	0.99rc1
d24 1
a24 1
WRKSRC=		${WRKDIR}/pymol-0.99
@


1.26
log
@BROKEN on amd64 and ia64: Does not build
@
text
@d30 1
a30 1
.if ${ARCH} == "amd64" || ${ARCH} == "ia64"
@


1.25
log
@o Update to 0.99rc1
o add data dir to have working port[1]

PR:		95121[1]
Submitted by:	Sangwoo Shim <sangwoos at gmail.com>[1]

This commit is a result of hacks at the CodeFest Akihabara 2006 hosted by FSIJ.
@
text
@d30 4
@


1.24
log
@Remove USE_REINPLACE from all categories starting with B
@
text
@d8 1
a8 2
PORTVERSION=	0.98
PORTREVISION=	1
d24 1
a24 1
WRKSRC=		${WRKDIR}/pymol-${PORTVERSION}
d37 1
a37 4
	@@${INSTALL_DATA} ${WRKSRC}/setup/Rules.linux ${WRKSRC}/Rules.make
.if ${PYTHON_REL} >= 230
	@@${REINPLACE_CMD} -e 's,@@DEFS@@,,g' ${WRKSRC}/contrib/modules/Makefile.pre.in.src
.endif
d40 2
a41 6
	@@${INSTALL_DATA} ${WRKSRC}/setup/pymol.com.linux-rh7x ${WRKSRC}/setup/pymol.com
	@@${REINPLACE_CMD} -e 's,@@PREFIX@@,${PREFIX},g' -e 's,@@LOCALBASE@@,${LOCALBASE},g' ${WRKSRC}/setup/pymol.com
	@@${REINPLACE_CMD} -e 's,@@PREFIX@@,${PREFIX},g' \
		-e 's,examples\(/devel/cgo03.py\),${EXAMPLESDIR}\1,' \
		${WRKSRC}/modules/pmg_tk/Demo.py
	@@${RM} -f ${WRKSRC}/modules/pmg_tk/Demo.py.*
d50 1
a50 1
	@@${INSTALL_SCRIPT} ${WRKSRC}/setup/pymol.com ${PREFIX}/bin/pymol
d52 1
a52 1
	@@${TAR} -C ${WRKSRC} -chf - modules test | \
@


1.23
log
@- Update graphics/libglut to 6.4.1.
- Shared lib version and PORTREVISION bumb for all affected ports.

While I'm here:
- Remove USE_MESA knob where it was (35 ports).
  It marked as depricated for 2 years.

PR:		ports/90247
Submitted by:	Ermal Lu?i <eri--@@albabsd.org>
@
text
@a26 1
USE_REINPLACE=	yes
@


1.22
log
@Update to 0.9.8
@
text
@d9 1
d22 1
a22 1
LIB_DEPENDS=	glut.3:${PORTSDIR}/graphics/libglut \
@


1.21
log
@Try to unbreak on amd64 and ia64

Approved by:    portmgr (self)
@
text
@d8 1
a8 1
PORTVERSION=	0.97
@


1.20
log
@update to 0.97
@
text
@d31 1
a31 1
.if ${MACHINE_ARCH} == "sparc64"
@


1.19
log
@Forced commit
Actually this report was submitted by mharo,
and eik kindly told me how to fix.

PR:	71095
Submitted by:	mharo
@
text
@d8 1
a8 1
PORTVERSION=	0.93
d51 4
@


1.18
log
@Avoid the use of != statements in ports Makefile

PR:		71095
Submitted by:	eik
@
text
@@


1.17
log
@Make portlint happy by replacing space to tab

PR:		65409
Submitted by:	trevor
@
text
@d31 5
a35 1
PICFLAG!=	${MAKE} -f bsd.lib.mk -V PICFLAG
@


1.16
log
@Do not hardcord PICFLAG
Submitted by:	ru
@
text
@d31 1
a31 1
PICFLAG!= ${MAKE} -f bsd.lib.mk -V PICFLAG 
@


1.15
log
@Backout previous change of PICFLAG, since
behaviour of -fPIC and -fpic are different.
Here is the comment form obrien:

--
"-fpic" is a [minor?] optimization for machines that can handle it:

  -fpic
    Generate position-independent code (PIC) suitable for use in a shared
    library, if supported for the target machine. Such code accesses all
    constant addresses through a global offset table (GOT). The dynamic
    loader resolves the GOT entries when the program starts (the dynamic
    loader is not part of GCC; it is part of the operating system). If
    the GOT size for the linked executable exceeds a machine-specific
    maximum size, you get an error message from the linker indicating
    that -fpic does not work; in that case, recompile with -fPIC instead.
    (These maximums are 16k on the m88k, 8k on the SPARC, and 32k on the
    m68k and RS/6000. The 386 has no such limit.)

  -fPIC
    If supported for the target machine, emit position-independent code,
    suitable for dynamic linking and avoiding any limit on the size of
    the global offset table. This option makes a difference on the m68k,
    m88k, and the SPARC.

Thanks to: obrien
@
text
@d31 1
a31 7
.if !defined(PICFLAG)
.if ${MACHINE_ARCH} == "sparc64"
PICFLAG=-fPIC
.else
PICFLAG=-fpic
.endif
.endif
@


1.14
log
@-fPIC is appropreate on all architectures.

Submitted by: kris
@
text
@d31 2
d34 4
@


1.13
log
@1) update to 0.9.3
2) honor PREFIX & LOCALBASE
3) SIZEify
4) possible fix for amd64 and ia64
@
text
@a30 2
.if !defined(PICFLAG)
.if ${MACHINE_ARCH} == "sparc64"
a31 4
.else
PICFLAG=-fpic
.endif
.endif
@


1.12
log
@Bump PORTREVISION on all ports that depend on gettext to aid with upgrading.

(Part 2)
@
text
@d8 1
a8 2
PORTVERSION=	0.90
PORTREVISION=	1
d31 8
d47 1
a47 1
	@@${REINPLACE_CMD} 's,@@PREFIX@@,${PREFIX},g' ${WRKSRC}/setup/pymol.com
d52 2
a53 1
	@@${REINPLACE_CMD} 's,@@PYTHON_VERSION@@,${PYTHON_VERSION},g' ${WRKSRC}/Rules.make
@


1.11
log
@LIB_DEPENDS on libglut for libglut rather than soon-to-disappear Mesa3.
@
text
@d9 1
@


1.10
log
@Fix build on python2.3
@
text
@d21 1
a21 1
LIB_DEPENDS=	glut.3:${PORTSDIR}/graphics/Mesa3 \
@


1.9
log
@Update to 0.90
@
text
@d29 2
d33 3
d59 1
a59 1
.include <bsd.port.mk>
@


1.8
log
@Updated to 0.8.6.

Submitted by: M. L. Dodson <bdodson@@scms.utmb.EDU>
Pkg-plist by: maho
@
text
@d8 1
a8 1
PORTVERSION=	0.86
@


1.7
log
@Clear moonlight beckons.
Requiem mors pacem pkg-comment,
And be calm ports tree.

E Nomini Patri, E Fili, E Spiritu Sancti.
@
text
@d8 1
a8 2
PORTVERSION=	0.82
PORTREVISION=	3
@


1.6
log
@1. add a missing dependency on png and unbreak.
2. change e-mail address of maho.
@
text
@d17 1
@


1.5
log
@o Fix examples directory path which is changed in last revision.

Submitted by:	Glenn Johnson <glennpj@@charter.net>
@
text
@d16 1
a16 1
MAINTAINER=	chat95@@mbox.kyoto-inet.or.jp
d21 2
a22 1
LIB_DEPENDS=	glut.3:${PORTSDIR}/graphics/Mesa3
@


1.4
log
@o Fix RUN_DEPENDS path (PMW -> Pmw)
o Fix DISTNAME which was broken by previous commit.
o Install example files

PR:		41977
Submitted by:	Glenn Johnson <glennpj@@charter.net>
Approved by:	maintainer
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text
@d9 1
a9 1
PORTREVISION=	2
d34 4
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1.3
log
@o Remove redundant dependency on py-tkinter.
o Bump PORTREVISION that I've missed on last commit.

Submitted by:	Glenn Johnson <glennpj@@charter.net>
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text
@d9 1
a9 1
PORTREVISION=	1
d20 1
a20 1
		${PYTHON_SITELIBDIR}/PMW:${PORTSDIR}/x11-toolkits/pmw
d23 1
a23 1
WRKSRC=         ${WRKDIR}/${PKGNAME}
d25 1
a25 1
USE_REINPLACE=  yes
d41 5
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1.2
log
@Add a dependecy to x11-toolkits/pmw

PR:		41857
Submitted by:	Glenn Johnson <gjohnson@@srrc.ars.usda.gov>
Approved by:	maintainer
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text
@d9 1
a19 1
		${PYTHON_SITELIBDIR}/_tkinter.so:${PORTSDIR}/x11-toolkits/py-tkinter \
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1.1
log
@Add pymol 0.82, Free and Open-Source molecular modeling system.

PR:		40694
Submitted by:	Nakata Maho <chat95@@mbox.kyoto-inet.or.jp>
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text
@d19 2
a20 1
		${PYTHON_SITELIBDIR}/_tkinter.so:${PORTSDIR}/x11-toolkits/py-tkinter
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