head	1.51;
access;
symbols
	RELEASE_8_3_0:1.45
	RELEASE_9_0_0:1.44
	RELEASE_7_4_0:1.42
	RELEASE_8_2_0:1.42
	RELEASE_6_EOL:1.42
	RELEASE_8_1_0:1.42
	RELEASE_7_3_0:1.40
	RELEASE_8_0_0:1.39
	RELEASE_7_2_0:1.38
	RELEASE_7_1_0:1.38
	RELEASE_6_4_0:1.38
	RELEASE_5_EOL:1.38
	RELEASE_7_0_0:1.37
	RELEASE_6_3_0:1.37
	PRE_XORG_7:1.36
	RELEASE_4_EOL:1.36
	RELEASE_6_2_0:1.36
	RELEASE_6_1_0:1.34
	RELEASE_5_5_0:1.34
	RELEASE_6_0_0:1.30
	RELEASE_5_4_0:1.30
	RELEASE_4_11_0:1.30
	RELEASE_5_3_0:1.27
	RELEASE_4_10_0:1.26
	RELEASE_5_2_1:1.24
	RELEASE_5_2_0:1.24
	RELEASE_4_9_0:1.22
	RELEASE_5_1_0:1.22
	RELEASE_4_8_0:1.21
	RELEASE_5_0_0:1.20
	RELEASE_4_7_0:1.19
	RELEASE_4_6_2:1.18
	RELEASE_4_6_1:1.18
	RELEASE_4_6_0:1.18
	RELEASE_5_0_DP1:1.17
	RELEASE_4_5_0:1.17
	RELEASE_4_4_0:1.17
	RELEASE_4_3_0:1.17
	RELEASE_4_2_0:1.17
	RELEASE_4_1_1:1.16
	RELEASE_4_1_0:1.16
	RELEASE_3_5_0:1.16
	RELEASE_4_0_0:1.15
	RELEASE_3_4_0:1.15
	RELEASE_3_3_0:1.15
	RELEASE_3_2_0:1.13
	RELEASE_3_1_0:1.13
	RELEASE_2_2_8:1.11
	RELEASE_3_0_0:1.10
	RELEASE_2_2_7:1.3
	RELEASE_2_2_6:1.2
	seaview_1_0:1.1.1.1
	FRANKCH:1.1.1;
locks; strict;
comment	@# @;


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1.38
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1.37
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1.30
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desc
@@


1.51
log
@## SVN ## Exported commit - http://svnweb.freebsd.org/changeset/base/310871
## SVN ## CVS IS DEPRECATED: http://wiki.freebsd.org/CvsIsDeprecated
@
text
@# Created by: frankch@@waru.life.nthu.edu.tw
# $FreeBSD: head/biology/seaview/Makefile 310871 2013-01-23 15:00:18Z makc $

PORTNAME=	seaview
PORTVERSION=	4.4.0
PORTREVISION=	1
PORTEPOCH=	1
CATEGORIES=	biology
MASTER_SITES=	http://pbil.univ-lyon1.fr/software/seaview_data/archive/
DISTNAME=	${PORTNAME}_${PORTVERSION}

MAINTAINER=	ports@@FreeBSD.org
COMMENT=	Multiple DNA/protein sequence alignment editor

LIB_DEPENDS=	pthread-stubs:${PORTSDIR}/devel/libpthread-stubs \
		jpeg:${PORTSDIR}/graphics/jpeg \
		png15:${PORTSDIR}/graphics/png \
		freetype:${PORTSDIR}/print/freetype2 \
		expat:${PORTSDIR}/textproc/expat2 \
		fontconfig:${PORTSDIR}/x11-fonts/fontconfig \
		fltk:${PORTSDIR}/x11-toolkits/fltk \
		xcb:${PORTSDIR}/x11/libxcb

OPTIONS_DEFINE=	PDFLIB
OPTIONS_DEFAULT=PDFLIB
PDFLIB_DESC=	PDFlib support

WRKSRC=		${WRKDIR}/${PORTNAME}

USE_XORG=	x11 xau xdmcp xext xft xinerama xrender
USE_GMAKE=	yes
MAKE_ENV=	HELPFILE='-DDEFAULT_HELPFILE=\"${DATADIR}/seaview.html\"' \
		PHYMLNAME='-DPHYMLNAME=\"phyml\"' \
		IFLTK='-I${LOCALBASE}/include' \
		LFLTK='-L${LOCALBASE}/lib' \
		USE_XFT='-DUSE_XFT' \
		OPT="${CFLAGS}"
ALL_TARGET=	${PORTNAME}
MAKE_JOBS_SAFE=	yes

DESKTOP_ENTRIES="SeaView" "${COMMENT}" "" \
		"${PORTNAME}" "Biology;Science;" "true"

PLIST_FILES=	bin/seaview %%DATADIR%%/seaview.html
PLIST_DIRS=	%%DATADIR%%

.include <bsd.port.options.mk>

.if ${PORT_OPTIONS:MPDFLIB}
LIB_DEPENDS+=	pdf:${PORTSDIR}/print/pdflib
MAKE_ENV+=	LPDF='-L${LOCALBASE}/lib -lpdf'
.else
MAKE_ENV+=	PDF_PS_FLAGS='-DNO_PDF'
.endif

post-patch:
	@@${REINPLACE_CMD} -e \
		's|^PDF_PS_FLAGS |#PDF_PS_FLAGS | ; \
		 s|^FLTK |#FLTK | ; \
		 s|^USE_XFT |#USE_XFT | ; \
		 s|^CC |#CC | ; \
		 s|^CXX |#CXX | ; \
		 s|^OPT |#OPT | ; \
		 s|-lpthread|${PTHREAD_LIBS}|' ${WRKSRC}/Makefile

do-install:
	${INSTALL_PROGRAM} ${WRKSRC}/${PORTNAME} ${PREFIX}/bin
	@@${MKDIR} ${DATADIR}
	${INSTALL_DATA} ${WRKSRC}/seaview.html ${DATADIR}

.include <bsd.port.mk>
@


1.50
log
@## SVN ## Exported commit - http://svnweb.freebsd.org/changeset/base/310020
## SVN ## CVS IS DEPRECATED: http://wiki.freebsd.org/CvsIsDeprecated
## SVN ##
## SVN ## ------------------------------------------------------------------------
## SVN ## r310020 | makc | 2013-01-07 02:07:26 +0000 (Mon, 07 Jan 2013) | 9 lines
## SVN ##
## SVN ## - Update DESKTOP_ENTRIES:
## SVN ##   * rephrase Comment field or use port ${COMMENT} if appropriate
## SVN ##   * adjust Icon field according to the Desktop Entry Specification
## SVN ##   * update Categories field: remove deprecated category Application;
## SVN ##     set main category, if missing
## SVN ## - Remove indefinite article and/or rephrase COMMENT
## SVN ## - Trim Makefile header
## SVN ## - Other minor changes
## SVN ##
## SVN ## ------------------------------------------------------------------------
## SVN ##
@
text
@d2 1
a2 1
# $FreeBSD: head/biology/seaview/Makefile 310020 2013-01-07 02:07:26Z makc $
d6 1
@


1.49
log
@Switch exporter over
@
text
@d2 1
a2 1
# $FreeBSD: head/biology/seaview/Makefile 306709 2012-10-30 20:31:14Z pawel $
d40 2
a41 2
DESKTOP_ENTRIES="${PORTNAME}" "${COMMENT}" "" "${PORTNAME}" \
		"Application;Science;Biology;" "true"
@


1.48
log
@SVN rev 306709 on 2012-10-30 20:31:14Z by pawel

- Update to version 4.4.0
- Mark MAKE_JOBS_SAFE
- Make dependency on print/pdflib optional
- Switch to PLIST_FILES

While here:
- Add missing deps
- Add desktop entry

PR:		ports/172498
Submitted by:	KATO Tsuguru <tkato432@@yahoo.com>
Feature safe:	yes
@
text
@d2 1
a2 1
# $FreeBSD$
@


1.47
log
@SVN rev 305130 on 2012-10-01 14:45:16Z by tabthorpe

- Reassign to the heap at maintainer's request
@
text
@d5 2
a6 2
PORTVERSION=	2006.02.13
PORTREVISION=	9
d8 2
a9 3
MASTER_SITES=	ftp://pbil.univ-lyon1.fr/pub/mol_phylogeny/seaview/archive/
DISTNAME=	${PORTNAME}${PORTVERSION:S/.//g}
EXTRACT_SUFX=	.tar
d14 28
a41 2
LIB_DEPENDS=	fltk.1:${PORTSDIR}/x11-toolkits/fltk \
		pdf.6:${PORTSDIR}/print/pdflib
d43 2
a44 4
NO_WRKSUBDIR=	yes
EXTRACT_CMD=	${CAT}
EXTRACT_BEFORE_ARGS=	#
ALL_TARGET=	${PORTNAME}
d46 18
a63 2
CFLAGS+=	-D HAVE_DIRENT_H \
		-D DEFAULT_HELPFILE=${PREFIX}/lib/X11/${PORTNAME}/seaview.help
d66 3
a68 4
	${INSTALL_PROGRAM} ${WRKDIR}/${PORTNAME} ${PREFIX}/bin
	${INSTALL_SCRIPT} ${WRKDIR}/seaview_align.sh ${PREFIX}/bin
	@@${MKDIR} ${PREFIX}/lib/X11/${PORTNAME}
	${INSTALL_DATA} ${WRKDIR}/seaview.help ${PREFIX}/lib/X11/${PORTNAME}
@


1.46
log
@- update png to 1.5.10
@
text
@d1 1
a1 5
# ex:ts=8
# New ports collection Makefile for: seaview
# Date created:         Dec 5 1997
# Whom:                 frankch@@waru.life.nthu.edu.tw
#
a2 1
#
d12 1
a12 1
MAINTAINER=	fernan@@iib.unsam.edu.ar
@


1.45
log
@Chase pdflib.so version and bump PORTREVISION accordingly.
@
text
@d11 1
a11 1
PORTREVISION=	8
@


1.44
log
@- unbreak

Feature safe:	yes
@
text
@d11 1
a11 1
PORTREVISION=	7
d21 1
a21 1
		pdf.8:${PORTSDIR}/print/pdflib
@


1.43
log
@- Mark BROKEN: does not compile with new fltk

Reported by:	pointyhat
@
text
@a22 2
BROKEN=		does not compile

@


1.42
log
@- update to 1.4.1
Reviewed by:	exp8 run on pointyhat
Supported by:	miwi
@
text
@d23 2
@


1.41
log
@- Chase x11-toolkits/fltk update
@
text
@d11 1
a11 1
PORTREVISION=	6
@


1.40
log
@- update to jpeg-8
@
text
@d11 1
a11 1
PORTREVISION=	5
@


1.39
log
@- bump all port that indirectly depends on libjpeg and have not yet been bumped or updated
Requested by:	edwin
@
text
@d11 1
a11 1
PORTREVISION=	4
@


1.38
log
@- Remove USE_XLIB/USE_X_PREFIX/USE_XPM in favor of USE_XORG
- Bump PORTREVISION

Approved by:	portmgr (xorg cleanup)
@
text
@d11 1
a11 1
PORTREVISION=	3
@


1.37
log
@- Welcome X.org 7.2 \o/.
- Set X11BASE to ${LOCALBASE} for recent ${OSVERSION}.
- Bump PORTREVISION for ports intalling files in ${X11BASE}.
@
text
@d11 1
a11 1
PORTREVISION=	2
a22 1
USE_X_PREFIX=	yes
@


1.36
log
@Chase pdf library and bump PORTREVISION.
@
text
@d11 1
a11 1
PORTREVISION=	1
@


1.35
log
@- Update to 2006.02.13

PR:		95281
Submitted by:	maintainer
@
text
@d11 1
d21 1
a21 1
		pdf.7:${PORTSDIR}/print/pdflib
@


1.34
log
@Update to 2006.01.25.

PR:		ports/93051
Submitted by:	Fernan Aguero <fernan@@iib.unsam.edu.ar> (maintainer)
@
text
@d10 1
a10 1
PORTVERSION=	2006.01.25
@


1.33
log
@- New upstream version; two patches incorporated.

PR:		90140
Submitted by:	Fernan Aguero <fernan@@iib.unsam.edu.ar> (maintainer)
Approved by:	clement (mentor)
@
text
@d10 1
a10 1
PORTVERSION=	2006.01.01
d12 2
a13 2
MASTER_SITES=	ftp://pbil.univ-lyon1.fr/pub/mol_phylogeny/seaview/
DISTNAME=	${PORTNAME}
a14 1
DIST_SUBDIR=	${PORTNAME}-${PORTVERSION}
d32 2
a33 2
	@@${INSTALL_PROGRAM} ${WRKSRC}/${DISTNAME} ${PREFIX}/bin
	@@${INSTALL_SCRIPT} ${WRKSRC}/seaview_align.sh ${PREFIX}/bin
d35 1
a35 1
	@@${INSTALL_DATA} ${WRKSRC}/seaview.help ${PREFIX}/lib/X11/${PORTNAME}
@


1.32
log
@- Update to 2005.13.07 to make fetchable again

PR:		89976
Submitted by:	Fernan Aguero <fernan@@iib.unsam.edu.ar> (maintainer)
Approved by:	clement (mentor)
@
text
@d10 1
a10 1
PORTVERSION=	2005.13.07
d30 1
a30 1
		-D DEFAULT_HELPFILE=${PREFIX}/lib/X11/seaview/seaview.help
d35 2
a36 2
	@@${MKDIR} ${PREFIX}/lib/X11/seaview
	@@${INSTALL_DATA} ${WRKSRC}/seaview.help ${PREFIX}/lib/X11/seaview
@


1.31
log
@BROKEN: Size mismatch
@
text
@d10 1
a10 1
PORTVERSION=	2004.12.16
d20 2
a21 3
LIB_DEPENDS=	fltk.1:${PORTSDIR}/x11-toolkits/fltk

BROKEN=		Size mismatch
@


1.30
log
@- Update to 2004.12.16

PR:		ports/75205
Submitted by:	maintainer
@
text
@d22 2
@


1.29
log
@Not a real update with the last patch.
The real update here.
@
text
@d10 1
a10 1
PORTVERSION=	2004.09.24
@


1.28
log
@- This update brings seaview to the latest release (dated 09.24.04
in the FTP site).

- While here add a modeline for vi, and fix a tab (cosmetic)

- Make portlint happy.

PR:		ports/74897
Submitted by:	maintainer
@
text
@d1 1
d10 1
a10 1
PORTVERSION=	2004.03.16
d24 1
a24 1
EXTRACT_CMD=		${CAT}
@


1.27
log
@unbreak, only minor changes in the distfiles (see PR)

Since the distfile has no version number, put it in
DIST_SUBDIR=	${PORTNAME}-${PORTVERSION}

PR:		66817
Submitted by:	Fernan Aguero <fernan@@iib.unsam.edu.ar> (new maintainer)
@
text
@d13 1
a14 1
EXTRACT_SUFX=	.tar
@


1.26
log
@BROKEN: Checksum mismatch
@
text
@d9 1
a9 1
PORTVERSION=	2003.11.25
d13 1
d16 1
a16 1
MAINTAINER=	ports@@FreeBSD.org
a20 2
BROKEN=		Checksum mismatch

d23 2
a24 3
EXTRACT_CMD=		${TAR}
EXTRACT_BEFORE_ARGS=	-xf
EXTRACT_AFTER_ARGS=	# empty
@


1.25
log
@- Update to version 2003.11.25
@
text
@d20 2
@


1.24
log
@- Update to new version 2003.11.17
- Unbreak this port
@
text
@d9 1
a9 1
PORTVERSION=	2003.11.17
@


1.23
log
@Mark BROKEN: distfile has changed.
@
text
@d9 1
a9 1
PORTVERSION=	2003.01.21
d20 2
a21 4
BROKEN=		Bad checksum

USE_X_PREFIX=	YES
NO_WRKSUBDIR=	YES
d25 1
a25 1
MAKEFILE=	makefile
d31 4
a34 7
	@@ ${INSTALL_PROGRAM} ${WRKSRC}/${DISTNAME} ${PREFIX}/bin
	@@ ${INSTALL_SCRIPT} ${WRKSRC}/seaview_align.sh ${PREFIX}/bin
	@@ (${MKDIR} ${PREFIX}/lib/X11/seaview)
	@@ ${INSTALL_DATA} ${WRKSRC}/seaview.help ${PREFIX}/lib/X11/seaview

post-install:
	@@ ${CAT} ${DESCR}
@


1.22
log
@Upgrade to 2003.01.21.  Appears to only add some more file export/print
options.  Additional patches were necessary since the fltk port seems
to have been upgraded and thus also broken this port (which would
been already broken due to the checksum failure).
@
text
@d20 2
@


1.21
log
@De-pkg-comment.
@
text
@d9 1
a9 1
PORTVERSION=	2002.10.18
d26 3
@


1.20
log
@unbroke by upgrade to 20021018
drop maintainership

PR:		45466
Submitted by:	old maintainer
@
text
@d16 1
@


1.19
log
@Bump XForms lib. version.
@
text
@d9 1
a9 1
PORTVERSION=	1.0
d15 1
a15 1
MAINTAINER=	frankch@@waru.life.nthu.edu.tw
d17 1
a17 3
BROKEN=		"Checksum is incorrect"

LIB_DEPENDS=	forms.1:${PORTSDIR}/x11-toolkits/xforms
d24 1
d28 1
@


1.18
log
@BROKEN: Checksum is incorrect
@
text
@d19 1
a19 1
LIB_DEPENDS=	xforms.0:${PORTSDIR}/x11-toolkits/xforms
@


1.17
log
@Change PKGDIR from pkg/ to .  Also fix places where ${PKGDIR} is
spelled out (many of which are ${PKGDIR}/MESSAGE -> ${PKGMESSAGE} type
fixes that shouldn't have been necessary) and the string "/pkg/"
appear.
@
text
@d5 1
a5 1
# $FreeBSD: ports/biology/seaview/Makefile,v 1.16 2000/04/08 22:04:54 mharo Exp $
d16 2
@


1.16
log
@update with the new PORTNAME/PORTVERSION variables
@
text
@d5 1
a5 1
# $FreeBSD: ports/biology/seaview/Makefile,v 1.15 1999/08/25 04:48:07 obrien Exp $
d31 1
a31 1
	@@ ${CAT} ${PKGDIR}/DESCR
@


1.15
log
@Change Id->FreeBSD.
@
text
@a1 1
# Version required:     1.0
d5 1
a5 1
# $FreeBSD$
d8 5
a12 4
DISTNAME=       seaview
PKGNAME=        seaview-1.0
CATEGORIES=     biology
MASTER_SITES=   ftp://pbil.univ-lyon1.fr/pub/mol_phylogeny/seaview/
d15 1
a15 1
MAINTAINER=     frankch@@waru.life.nthu.edu.tw
@


1.14
log
@The xforms ports is no longer an i386-only port.
@
text
@d6 1
a6 1
# $Id: Makefile,v 1.13 1999/02/03 11:11:40 asami Exp $
@


1.13
log
@Adjust port Makefiles to new EXTRACT_* variable defaults.  See log of
bsd.port.mk rev. 1.304 for details on the change.

The fix here is one of the following.

(1) Define USE_BZIP2 instead of BUILD_DEPENDS on bzip2 and redefining
    EXTRACT_* commands.

(2) Change ${EXTRACT_CMD} to ${TAR} when the command is obviously
    calling the "tar" command (i.e., arguments like "-xzf" are spelled
    out).

(3) If ${EXTRACT_CMD} is called directly with ${EXTRACT_BEFORE_ARGS},
    add ${EXTRACT_AFTER_ARGS} to the command line as well.

(4) If any of EXTRACT_CMD, EXTRACT_BEFORE_ARGS or EXTRACT_AFTER_ARGS
    is set, define the other two too.
@
text
@d6 1
a6 1
# $Id: Makefile,v 1.12 1999/01/07 08:19:24 simokawa Exp $
a17 3

# depends on xforms
ONLY_FOR_ARCHS=	i386
@


1.12
log
@Added 'ONLY_FOR_ARCHS=i386' to XForms dependent ports.
XForms has not been available for FreeBSD/alpha yet.
@
text
@d6 1
a6 1
# $Id: Makefile,v 1.11 1998/11/03 00:51:24 jseger Exp $
d24 1
d26 1
@


1.11
log
@Unbreak for ELF
@
text
@d6 1
a6 1
# $Id: Makefile,v 1.10 1998/10/08 10:08:33 jkoshy Exp $
d18 3
@


1.10
log
@Master site changed, update MD5.

PR:		8200
Submitted by:	frankch@@waru.life.nthu.edu.tw (maintainer)
@
text
@d6 1
a6 1
# $Id: Makefile,v 1.9 1998/09/26 23:18:03 steve Exp $
a15 2

BROKEN_ELF=	xforms is a.out only
@


1.9
log
@Mark broken for ELF because of xforms port.
@
text
@d6 1
a6 1
# $Id: Makefile,v 1.8 1998/08/21 03:09:08 jseger Exp $
d12 1
a12 1
MASTER_SITES=   ftp://biom3.univ-lyon1.fr/pub/mol_phylogeny/seaview/
@


1.8
log
@Unbreak by making a new checksum and fixing the makefile to find a new source
file.
@
text
@d6 1
a6 1
# $Id: Makefile,v 1.7 1998/08/20 17:41:16 jseger Exp $
d17 3
a19 1
LIB_DEPENDS=	xforms\\.0\\.:${PORTSDIR}/x11-toolkits/xforms
@


1.7
log
@BROKEN:
# make checksum
>> Checksum mismatch for seaview.tar.
@
text
@d6 1
a6 1
# $Id: Makefile,v 1.6 1998/08/07 23:56:11 asami Exp $
a17 2

BROKEN=		checksum
@


1.6
log
@Fix up dependencies for ports that moved into the x11-toolkits category.
@
text
@d6 1
a6 1
# $Id: Makefile,v 1.5 1998/08/05 09:30:44 asami Exp $
d18 2
@


1.5
log
@Rename all USE_X11 to USE_X_PREFIX.  Requires 1.279 (3.0-current) or
1.227.2.41 (2.2-stable) of bsd.port.mk for this to be interpreted
correctly.
@
text
@d6 1
a6 1
# $Id: Makefile,v 1.4 1998/07/27 23:24:01 asami Exp $
d17 1
a17 1
LIB_DEPENDS=	xforms\\.0\\.:${PORTSDIR}/x11/xforms
@


1.4
log
@Making x11 category more useful project part 1: take out "x11" of
ports that are mere users of X.

Partial list submitted by: Josh Gilliam <josh@@quick.net>
@
text
@d6 1
a6 1
# $Id: Makefile,v 1.3 1998/03/30 23:44:07 asami Exp $
d19 1
a19 1
USE_X11=	YES
@


1.3
log
@mkdir -> ${MKDIR}.  This also has the side-effect of making this
port reinstall-friendly.
@
text
@d6 1
a6 1
# $Id: Makefile,v 1.2 1997/12/26 11:49:39 asami Exp $
d11 1
a11 1
CATEGORIES=     biology x11
@


1.2
log
@Typo (LIB_DEPEND -> LIB_DEPENDS).
@
text
@d6 1
a6 1
# $Id: Makefile,v 1.1.1.1 1997/12/21 22:04:38 vanilla Exp $
d25 1
a25 1
	@@ (mkdir ${PREFIX}/lib/X11/seaview)
@


1.1
log
@Initial revision
@
text
@d6 1
a6 1
# $Id$
d17 1
a17 1
LIB_DEPEND=	xforms\\.0\\.:${PORTSDIR}/x11/xforms
@


1.1.1.1
log
@Seaview is a multiple DNA sequence alignment editor.
It is capable of align DNA sequences from various organisms
and assign their position in the phylogenic tree.
PR:		ports/5229
Submitted by:	Frank Chen Hsiung Chan <frankch@@waru.life.nthu.edu.tw>
@
text
@@
