head	1.5;
access;
symbols;
locks; strict;
comment	@# @;


1.5
date	2013.03.22.23.30.03;	author svnexp;	state Exp;
branches;
next	1.4;

1.4
date	2012.11.17.05.54.53;	author svnexp;	state Exp;
branches;
next	1.3;

1.3
date	2012.07.21.22.20.32;	author gerald;	state Exp;
branches;
next	1.2;

1.2
date	2012.06.07.13.04.53;	author amdmi3;	state Exp;
branches;
next	1.1;

1.1
date	2012.06.06.17.51.33;	author amdmi3;	state Exp;
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next	;


desc
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1.5
log
@## SVN ## Exported commit - http://svnweb.freebsd.org/changeset/base/314960
## SVN ## CVS IS DEPRECATED: http://wiki.freebsd.org/CvsIsDeprecated
@
text
@# New ports collection makefile for:   seqan
# Date created:        3 May 2012
# Whom:                h2
#
# $FreeBSD: head/biology/seqan/Makefile 314960 2013-03-22 20:06:14Z makc $
#

PORTNAME=	seqan
PORTVERSION=	1.3.1
CATEGORIES=	biology
MASTER_SITES=	http://ftp.seqan.de/releases/

MAINTAINER=	h2+fbsdports@@fsfe.org
COMMENT=	C++ Sequence Analysis Library

LICENSE=	BSD GPLv3
LICENSE_COMB=	multi

LICENSE_FILE_BSD=${WRKSRC}/seqan/LICENSE
LICENSE_FILE_GPLv3=${WRKSRC}/apps/LICENSE

USE_ZIP=	yes

USES=		cmake:outsource
CMAKE_SOURCE_PATH=${WRKSRC}/cmake
USE_PYTHON_BUILD=yes
MAKE_JOB_SAFE=	yes

SUB_FILES=	pkg-message
PKG_MESSAGE=	${WRKDIR}/pkg-message

.include <bsd.port.pre.mk>

.if ${ARCH} == i386
# triggers internal error in system gcc
USE_GCC=	4.6+
.endif

# unsafe workaround because FreeBSD lacks logl and expl
# see "BUGS" in `man 3 math`
post-patch:
	@@${REINPLACE_CMD} -e 's|expl|exp|g' ${WRKSRC}/apps/snp_store/snp_store.h
	@@${REINPLACE_CMD} -e 's|logl|log|g' ${WRKSRC}/apps/snp_store/snp_store.h

post-install:
	@@${CAT} ${PKG_MESSAGE}

.include <bsd.port.post.mk>
@


1.4
log
@Switch exporter over
@
text
@d5 1
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# $FreeBSD: head/biology/seqan/Makefile 301291 2012-07-21 22:20:32Z gerald $
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USE_CMAKE=	yes
a25 1
CMAKE_OUTSOURCE=yes
@


1.3
log
@SVN rev 301291 on 2012-07-21 22:20:32Z by gerald

Replace USE_GCC=4.4+ by USE_GCC=4.6+ since GCC 4.4 is on its way out.

Approved by:	maintainer
@
text
@d5 1
a5 1
# $FreeBSD$
@


1.2
log
@- Fix maintainer email

Submitted by:	maintainer via private email
@
text
@d37 1
a37 1
USE_GCC=	4.4+
@


1.1
log
@SeqAn is an open source C++ library of efficient algorithms
and data structures for the analysis of sequences with the
focus on biological data. The library is licensed under the
3-clause BSD license except the applications which are GPL.

WWW: http://www.seqan.de/

PR:		167571
Submitted by:	Hannes <h2+fbsdports@@fsfe.org>
@
text
@d13 1
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MAINTAINER=	h2+fsbdports@@fsfe.org
@

