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comment	@# @;


1.11
date	2005.02.18.23.44.34;	author kris;	state dead;
branches;
next	1.10;

1.10
date	2004.12.18.23.02.21;	author kris;	state Exp;
branches;
next	1.9;

1.9
date	2004.12.17.08.01.21;	author linimon;	state Exp;
branches;
next	1.8;

1.8
date	2004.12.17.07.43.11;	author linimon;	state Exp;
branches;
next	1.7;

1.7
date	2004.12.17.06.43.46;	author linimon;	state Exp;
branches;
next	1.6;

1.6
date	2004.11.01.22.26.55;	author mezz;	state Exp;
branches;
next	1.5;

1.5
date	2004.11.01.21.25.09;	author mezz;	state Exp;
branches;
next	1.4;

1.4
date	2004.05.22.13.19.02;	author pav;	state Exp;
branches;
next	1.3;

1.3
date	2003.02.21.11.01.37;	author knu;	state Exp;
branches;
next	1.2;

1.2
date	2003.01.02.03.57.58;	author ijliao;	state Exp;
branches;
next	1.1;

1.1
date	2002.04.02.16.18.51;	author dinoex;	state Exp;
branches;
next	;


desc
@@


1.11
log
@As previously announced, remove ports that have reached their expiry date,
and the handful of ports that depended on them.
@
text
@# New ports collection makefile for:	spdbv
# Date created:				15 Jan 2002
# Whom:					chuynh@@biolateral.com.au
#
# $FreeBSD: ports/biology/spdbv/Makefile,v 1.10 2004/12/18 23:02:21 kris Exp $
#

PORTNAME=	spdbv
PORTVERSION=	3.7
PORTREVISION=	1
CATEGORIES=	biology
MASTER_SITES=	http://au.expasy.org/spdbv/program/ \
		http://www.expasy.org/spdbv/program/ \
		http://tw.expasy.org/spdbv/program/ \
		http://cn.expasy.org/spdbv/program/ \
		http://ca.expasy.org/spdbv/program/ \
		http://kr.expasy.org/spdbv/program/ \
		http://www.usm.maine.edu/spdbv/program/ \
		http://www.genebee.msu.ru/spdbv/program/
DISTNAME=	${PORTNAME}${PORTVERSION:C/\.//}-Linux

MAINTAINER=	chuynh@@biolateral.com.au
COMMENT=	Deep View Swiss-PdbViewer is a Protein viewer and analysis tool

RUN_DEPENDS=	${LINUXBASE}${X11BASE}/lib/libMesaGL.so.3:${PORTSDIR}/graphics/linux_mesa3 \
		${LINUXBASE}${X11BASE}/lib/libXm.so.3:${PORTSDIR}/x11-toolkits/linux-openmotif

SPDBV=	SPDBV

IGNORE=		is incompatible with new x11-toolkits/linux-openmotif 2.2.4
EXPIRATION_DATE=2005-02-18
DEPRECATED=	"${IGNORE}"

WRKSRC=		${WRKDIR}/SPDBV_DISTRIBUTION

USE_LINUX=	yes
NO_BUILD=	yes
NO_CDROM=	"Must be downloaded direct from Expasy via www interface"

do-install:
	@@cd ${WRKSRC}; ${SETENV} PREFIX=${PREFIX} ./install.sh

# PLIST_SUB=	PORTVERSION="${PORTVERSION}"

.include <bsd.port.mk>
@


1.10
log
@This port is scheduled to be removed on 2005-02-18 if it is still
broken at that time, and a fix has not been submitted to GNATS.
@
text
@d5 1
a5 1
# $FreeBSD$
@


1.9
log
@Clean up wording of IGNORE output.
@
text
@d31 2
@


1.8
log
@Unquote the IGNORE string.
@
text
@d30 1
a30 1
IGNORE=		Incompatible with new x11-toolkits/linux-openmotif 2.2.4
@


1.7
log
@With portmgr hat on, switch from BROKEN to ignore.  It does indeed build.
@
text
@d30 1
a30 1
IGNORE=		"Incompatible with new x11-toolkits/linux-openmotif 2.2.4"
@


1.6
log
@Correct a typo: s/linux-opera/linux-openmotif/g.
@
text
@d30 1
a30 1
BROKEN=		"Incompatible with new x11-toolkits/linux-openmotif 2.2.4"
@


1.5
log
@Chase the linux-openmotif shared library version and mark biology/spdbv as
broke, I get no respone from the maintainer since Oct 22, 2004. The
www/linux-opera works fine with new linux-openmotif. Also, bump PORTREVISION.

To fix or update for biology/spdbv is welcome, I shall commit them if I get
patch(es) in my Inbox.
@
text
@d30 1
a30 1
BROKEN=		"Incompatible with new x11-toolkits/linux-opera 2.2.4"
@


1.4
log
@- Remove long time unresponsive MASTER_SITE

PR:		ports/67016
Submitted by:	Roman Neuhauser <neuhauser@@chello.cz>
@
text
@d10 1
d26 1
a26 1
		${LINUXBASE}${X11BASE}/lib/libXm.so.2:${PORTSDIR}/x11-toolkits/linux-openmotif
d29 2
@


1.3
log
@De-pkg-comment.
@
text
@a16 1
		http://inn-prot.weizmann.ac.il/spdbv/program/\
@


1.2
log
@upgrade to 3.7

PR:		44957
Submitted by:	maintainer
@
text
@d23 1
@


1.1
log
@Swiss-PdbViewer is an application that provides a user friendly interface
allowing to analyse several proteins at the same time. The proteins can be
superimposed in order to deduce structural alignments and compare their
active sites or any other relevant parts. Amino acid mutations, H-bonds,
angles and distances between atoms are easy to obtain thanks to the
intuitive graphic and menu interface.

Moreover, Swiss-PdbViewer is tightly linked to Swiss-Model, an automated
homology modelling server developped at Glaxo Welcome Experimental Research
in Geneva. Working with these two programs greatly reduces the amount of work
necessary to generate models, as it is possible to thread a protein primary
sequence onto a 3D template and get an immediate feedback of how well the
threaded protein will be accepted by the reference structure before
submitting a request to build missing loops and refine sidechain packing.

Swiss-PdbViewer can also read electron density maps, and provides various
tools to build into the density. In addition, various modelling tools are
integrated and command files for popular energy minimisation packages can be
generated.

Finally, as a special bonus, POV-Ray scenes can be generated from the
current view in order to make stunning ray-traced quality images.

WWW:  http://www.expasy.ch/spdbv/

PR:		33902
Submitted by:	chuynh@@biolateral.com.au
@
text
@d9 1
a9 1
PORTVERSION=	37b2
d12 9
a20 9
				http://www.expasy.org/spdbv/program/ \
				http://tw.expasy.org/spdbv/program/ \
				http://cn.expasy.org/spdbv/program/ \
				http://ca.expasy.org/spdbv/program/ \
				http://kr.expasy.org/spdbv/program/ \
				http://inn-prot.weizmann.ac.il/spdbv/program/\
				http://www.usm.maine.edu/spdbv/program/ \
				http://www.genebee.msu.ru/spdbv/program/
DISTNAME=	${PORTNAME}${PORTVERSION}_IRIX_Linux
d24 2
a25 1
RUN_DEPENDS=	${LINUXBASE}${X11BASE}/lib/libMesaGL.so.3:${PORTSDIR}/graphics/linux_mesa3
d31 1
@

