head	1.3;
access;
symbols
	RELEASE_4_11_0:1.2
	RELEASE_5_3_0:1.2
	RELEASE_4_10_0:1.2
	RELEASE_5_2_1:1.2
	RELEASE_5_2_0:1.2
	RELEASE_4_9_0:1.2
	RELEASE_5_1_0:1.2
	RELEASE_4_8_0:1.2
	RELEASE_5_0_0:1.1
	RELEASE_4_7_0:1.1
	RELEASE_4_6_2:1.1
	RELEASE_4_6_1:1.1
	RELEASE_4_6_0:1.1;
locks; strict;
comment	@# @;


1.3
date	2005.02.18.23.44.34;	author kris;	state dead;
branches;
next	1.2;

1.2
date	2003.01.02.03.57.58;	author ijliao;	state Exp;
branches;
next	1.1;

1.1
date	2002.04.02.16.18.51;	author dinoex;	state Exp;
branches;
next	;


desc
@@


1.3
log
@As previously announced, remove ports that have reached their expiry date,
and the handful of ports that depended on them.
@
text
@SPDBV/bin/ppov10
SPDBV/bin/spdbv.Linux
SPDBV/bin/spdbv
SPDBV/readme.txt
SPDBV/news.txt
SPDBV/_stuff_/XtalInf.hlp
SPDBV/_stuff_/CavitInf.hlp
SPDBV/_stuff_/grmparam/CVS/Tag
SPDBV/_stuff_/grmparam/CVS/Root
SPDBV/_stuff_/grmparam/CVS/Entries
SPDBV/_stuff_/grmparam/CVS/Repository
SPDBV/_stuff_/grmparam/torsion.prm
SPDBV/_stuff_/grmparam/nbondsel.prm
SPDBV/_stuff_/grmparam/bonds.prm
SPDBV/_stuff_/grmparam/nonbonds.prm
SPDBV/_stuff_/grmparam/improper.prm
SPDBV/_stuff_/grmparam/angles.prm
SPDBV/_stuff_/gifs/getacro.gif
SPDBV/_stuff_/gifs/tips.gif
SPDBV/_stuff_/gifs/userguide.gif
SPDBV/_stuff_/gifs/feedback.gif
SPDBV/_stuff_/gifs/artgallery.gif
SPDBV/_stuff_/gifs/tutorial.gif
SPDBV/_stuff_/gifs/download.gif
SPDBV/_stuff_/gifs/references.gif
SPDBV/_stuff_/gifs/mirror.gif
SPDBV/_stuff_/gifs/index.gif
SPDBV/_stuff_/gifs/logo.gif
SPDBV/_stuff_/text/stereo.htm
SPDBV/_stuff_/text/loop.htm
SPDBV/_stuff_/text/fabp.htm
SPDBV/_stuff_/text/modeling.htm
SPDBV/_stuff_/text/pattern.htm
SPDBV/_stuff_/text/rama.htm
SPDBV/_stuff_/text/faq.htm
SPDBV/_stuff_/text/torsion.htm
SPDBV/_stuff_/text/templ_1.html
SPDBV/_stuff_/text/povscene.htm
SPDBV/_stuff_/text/build.htm
SPDBV/_stuff_/text/gromo_pl.htm
SPDBV/_stuff_/text/activsit.htm
SPDBV/_stuff_/text/tips.htm
SPDBV/_stuff_/text/refs.htm
SPDBV/_stuff_/text/disclaim.htm
SPDBV/_stuff_/text/render.htm
SPDBV/_stuff_/text/tools.htm
SPDBV/_stuff_/text/epot.htm
SPDBV/_stuff_/text/prefs.htm
SPDBV/_stuff_/text/color.htm
SPDBV/_stuff_/text/gallery_local.htm
SPDBV/_stuff_/text/files.htm
SPDBV/_stuff_/text/superpos.htm
SPDBV/_stuff_/text/feedback.htm
SPDBV/_stuff_/text/cshrc.htm
SPDBV/_stuff_/text/rendcomp.htm
SPDBV/_stuff_/text/pov.htm
SPDBV/_stuff_/text/display.htm
SPDBV/_stuff_/text/hew.htm
SPDBV/_stuff_/text/gallery.htm
SPDBV/_stuff_/text/energy.htm
SPDBV/_stuff_/text/disclaim_local.htm
SPDBV/_stuff_/text/mutation.htm
SPDBV/_stuff_/text/ribbon.htm
SPDBV/_stuff_/text/transfo.htm
SPDBV/_stuff_/text/moving.htm
SPDBV/_stuff_/text/select.htm
SPDBV/_stuff_/text/edmtut.htm
SPDBV/_stuff_/text/surface.htm
SPDBV/_stuff_/text/gromotut.htm
SPDBV/_stuff_/text/ctrlpanl.htm
SPDBV/_stuff_/text/tutorial.htm
SPDBV/_stuff_/text/distort.htm
SPDBV/_stuff_/text/selmenu.htm
SPDBV/_stuff_/text/toolmenu.htm
SPDBV/_stuff_/text/xsymtut.htm
SPDBV/_stuff_/text/server.htm
SPDBV/_stuff_/text/mirror.htm
SPDBV/_stuff_/text/rotolib.htm
SPDBV/_stuff_/text/edm.htm
SPDBV/_stuff_/text/main.htm
SPDBV/_stuff_/text/index.htm
SPDBV/_stuff_/text/phipsi.htm
SPDBV/_stuff_/manual.htm
SPDBV/_stuff_/crystsym.txt
SPDBV/_stuff_/SM_templ.htm
SPDBV/_stuff_/grmtopol/CVS/Tag
SPDBV/_stuff_/grmtopol/CVS/Root
SPDBV/_stuff_/grmtopol/CVS/Entries
SPDBV/_stuff_/grmtopol/CVS/Repository
SPDBV/_stuff_/grmtopol/ATP.tpl
SPDBV/_stuff_/grmtopol/ASP.tpl
SPDBV/_stuff_/grmtopol/TRP.tpl
SPDBV/_stuff_/grmtopol/SEP.tpl
SPDBV/_stuff_/grmtopol/HISA.tpl
SPDBV/_stuff_/grmtopol/HIS1.tpl
SPDBV/_stuff_/grmtopol/CYS1.tpl
SPDBV/_stuff_/grmtopol/CU1.tpl
SPDBV/_stuff_/grmtopol/ALA.tpl
SPDBV/_stuff_/grmtopol/NA.tpl
SPDBV/_stuff_/grmtopol/HISB.tpl
SPDBV/_stuff_/grmtopol/CYS2.tpl
SPDBV/_stuff_/grmtopol/SO42.tpl
SPDBV/_stuff_/grmtopol/CA2.tpl
SPDBV/_stuff_/grmtopol/THR.tpl
SPDBV/_stuff_/grmtopol/TYR.tpl
SPDBV/_stuff_/grmtopol/SER.tpl
SPDBV/_stuff_/grmtopol/LYS.tpl
SPDBV/_stuff_/grmtopol/CYS.tpl
SPDBV/_stuff_/grmtopol/OXT.tpl
SPDBV/_stuff_/grmtopol/MET.tpl
SPDBV/_stuff_/grmtopol/HHT.tpl
SPDBV/_stuff_/grmtopol/LEU.tpl
SPDBV/_stuff_/grmtopol/MSE.tpl
SPDBV/_stuff_/grmtopol/ILE.tpl
SPDBV/_stuff_/grmtopol/GLU.tpl
SPDBV/_stuff_/grmtopol/PHE.tpl
SPDBV/_stuff_/grmtopol/FE.tpl
SPDBV/_stuff_/grmtopol/CU.tpl
SPDBV/_stuff_/grmtopol/ARG.tpl
SPDBV/_stuff_/grmtopol/MG.tpl
SPDBV/_stuff_/grmtopol/LYSH.tpl
SPDBV/_stuff_/grmtopol/HISH.tpl
SPDBV/_stuff_/grmtopol/GLUH.tpl
SPDBV/_stuff_/grmtopol/CYSH.tpl
SPDBV/_stuff_/grmtopol/ASPH.tpl
SPDBV/_stuff_/grmtopol/GLY.tpl
SPDBV/_stuff_/grmtopol/VAL.tpl
SPDBV/_stuff_/grmtopol/CL.tpl
SPDBV/_stuff_/grmtopol/ARGN.tpl
SPDBV/_stuff_/grmtopol/GLN.tpl
SPDBV/_stuff_/grmtopol/ASN.tpl
SPDBV/_stuff_/grmtopol/MN.tpl
SPDBV/_stuff_/grmtopol/ZN.tpl
SPDBV/_stuff_/grmtopol/H2O.tpl
SPDBV/_stuff_/grmtopol/TPO.tpl
SPDBV/_stuff_/grmtopol/PRO.tpl
SPDBV/_stuff_/tinyloop.txt
SPDBV/_stuff_/LayerInf.hlp
SPDBV/_stuff_/crystmov.txt
SPDBV/_stuff_/AlignWnd.hlp
SPDBV/_stuff_/RamaWnd.hlp
SPDBV/_stuff_/CtrlPanl.hlp
SPDBV/_stuff_/default.PP
SPDBV/_stuff_/DispWnd.hlp
SPDBV/_stuff_/mainpage.htm
SPDBV/_stuff_/SM_req.htm
SPDBV/_stuff_/images/getacro.gif
SPDBV/_stuff_/images/rotamer6.gif
SPDBV/_stuff_/images/hb_pov.jpg
SPDBV/_stuff_/images/hb_wire.gif
SPDBV/_stuff_/images/phe1.gif
SPDBV/_stuff_/images/rib1.gif
SPDBV/_stuff_/images/rama.gif
SPDBV/_stuff_/images/sup1.gif
SPDBV/_stuff_/images/AB1.jpg
SPDBV/_stuff_/images/hbg_200x150.gif
SPDBV/_stuff_/images/rotamer4.gif
SPDBV/_stuff_/images/edm2.gif
SPDBV/_stuff_/images/phe2.gif
SPDBV/_stuff_/images/rib2.gif
SPDBV/_stuff_/images/sup2.gif
SPDBV/_stuff_/images/hb.gif
SPDBV/_stuff_/images/AB2.jpg
SPDBV/_stuff_/images/spacefil.gif
SPDBV/_stuff_/images/1ldbcont.gif
SPDBV/_stuff_/images/hb_std.gif
SPDBV/_stuff_/images/mixed.gif
SPDBV/_stuff_/images/1crn200x150.jpg
SPDBV/_stuff_/images/control.gif
SPDBV/_stuff_/images/bg.gif
SPDBV/_stuff_/images/activsit.gif
SPDBV/_stuff_/images/6ptiwat.gif
SPDBV/_stuff_/images/rotamer5.gif
SPDBV/_stuff_/images/tips.gif
SPDBV/_stuff_/images/phe3.gif
SPDBV/_stuff_/images/rib3.gif
SPDBV/_stuff_/images/userguide.gif
SPDBV/_stuff_/images/start.gif
SPDBV/_stuff_/images/1YDRsurf.jpg
SPDBV/_stuff_/images/smooth3m.jpg
SPDBV/_stuff_/images/smooth6m.jpg
SPDBV/_stuff_/images/index_gr.gif
SPDBV/_stuff_/images/rotamer2.gif
SPDBV/_stuff_/images/wind.gif
SPDBV/_stuff_/images/soft.gif
SPDBV/_stuff_/images/explorer.gif
SPDBV/_stuff_/images/tools2.gif
SPDBV/_stuff_/images/mirror_gr.gif
SPDBV/_stuff_/images/feedback.gif
SPDBV/_stuff_/images/rotamer3.gif
SPDBV/_stuff_/images/home.gif
SPDBV/_stuff_/images/rib3b.gif
SPDBV/_stuff_/images/thread2.gif
SPDBV/_stuff_/images/tools3.gif
SPDBV/_stuff_/images/ldb61_65.gif
SPDBV/_stuff_/images/1crnE.gif
SPDBV/_stuff_/images/ar-up.gif
SPDBV/_stuff_/images/thread1.gif
SPDBV/_stuff_/images/tutorial_gr.gif
SPDBV/_stuff_/images/rotamer1.gif
SPDBV/_stuff_/images/artgallery.gif
SPDBV/_stuff_/images/1YDRpot2.jpg
SPDBV/_stuff_/images/tools1.gif
SPDBV/_stuff_/images/1YDRpot.jpg
SPDBV/_stuff_/images/align.gif
SPDBV/_stuff_/images/smooth6.jpg
SPDBV/_stuff_/images/1ldbfull.gif
SPDBV/_stuff_/images/1ldbyell.gif
SPDBV/_stuff_/images/import.gif
SPDBV/_stuff_/images/hb_light.jpg
SPDBV/_stuff_/images/tutorial.gif
SPDBV/_stuff_/images/download.gif
SPDBV/_stuff_/images/mainwnd.gif
SPDBV/_stuff_/images/pov3now-4.gif
SPDBV/_stuff_/images/6pticell.gif
SPDBV/_stuff_/images/1bnhsmal.gif
SPDBV/_stuff_/images/ucell.gif
SPDBV/_stuff_/images/download_gr.gif
SPDBV/_stuff_/images/hbg_m.jpg
SPDBV/_stuff_/images/Armand003m.jpg
SPDBV/_stuff_/images/sticks.gif
SPDBV/_stuff_/images/FASL.gif
SPDBV/_stuff_/images/balstick.gif
SPDBV/_stuff_/images/1crnE2.gif
SPDBV/_stuff_/images/references.gif
SPDBV/_stuff_/images/model2.gif
SPDBV/_stuff_/images/hb_inter.jpg
SPDBV/_stuff_/images/mirror.gif
SPDBV/_stuff_/images/edm.gif
SPDBV/_stuff_/images/smooth3.jpg
SPDBV/_stuff_/images/feedback_gr.gif
SPDBV/_stuff_/images/artgallery_gr.gif
SPDBV/_stuff_/images/index.gif
SPDBV/_stuff_/images/userguide_gr.gif
SPDBV/_stuff_/images/references_gr.gif
SPDBV/_stuff_/images/logo.gif
SPDBV/_stuff_/images/pov3labl.gif
SPDBV/_stuff_/images/model1.gif
SPDBV/_stuff_/smalloop.txt
SPDBV/_stuff_/initloop.txt
SPDBV/_stuff_/Rotolib.aa
SPDBV/_stuff_/_loopDB_
SPDBV/user.tar.gz
bin/spdbv
@@dirrm SPDBV/bin
@@dirrm SPDBV/_stuff_/grmparam/CVS
@@dirrm SPDBV/_stuff_/grmparam
@@dirrm SPDBV/_stuff_/gifs
@@dirrm SPDBV/_stuff_/text
@@dirrm SPDBV/_stuff_/grmtopol/CVS
@@dirrm SPDBV/_stuff_/grmtopol
@@dirrm SPDBV/_stuff_/images
@@dirrm SPDBV/_stuff_
@@dirrm SPDBV
@


1.2
log
@upgrade to 3.7

PR:		44957
Submitted by:	maintainer
@
text
@@


1.1
log
@Swiss-PdbViewer is an application that provides a user friendly interface
allowing to analyse several proteins at the same time. The proteins can be
superimposed in order to deduce structural alignments and compare their
active sites or any other relevant parts. Amino acid mutations, H-bonds,
angles and distances between atoms are easy to obtain thanks to the
intuitive graphic and menu interface.

Moreover, Swiss-PdbViewer is tightly linked to Swiss-Model, an automated
homology modelling server developped at Glaxo Welcome Experimental Research
in Geneva. Working with these two programs greatly reduces the amount of work
necessary to generate models, as it is possible to thread a protein primary
sequence onto a 3D template and get an immediate feedback of how well the
threaded protein will be accepted by the reference structure before
submitting a request to build missing loops and refine sidechain packing.

Swiss-PdbViewer can also read electron density maps, and provides various
tools to build into the density. In addition, various modelling tools are
integrated and command files for popular energy minimisation packages can be
generated.

Finally, as a special bonus, POV-Ray scenes can be generated from the
current view in order to make stunning ray-traced quality images.

WWW:  http://www.expasy.ch/spdbv/

PR:		33902
Submitted by:	chuynh@@biolateral.com.au
@
text
@d1 6
a6 1
SPDBV/_stuff_/AlignWnd.hlp
d8 6
a13 15
SPDBV/_stuff_/CtrlPanl.hlp
SPDBV/_stuff_/DispWnd.hlp
SPDBV/_stuff_/LayerInf.hlp
SPDBV/_stuff_/RamaWnd.hlp
SPDBV/_stuff_/Rotolib.aa
SPDBV/_stuff_/Rotolib1.aa
SPDBV/_stuff_/Rotolib2.aa
SPDBV/_stuff_/SM_req.htm
SPDBV/_stuff_/SM_templ.htm
SPDBV/_stuff_/XtalInf.hlp
SPDBV/_stuff_/_loopDB_
SPDBV/_stuff_/crystmov.txt
SPDBV/_stuff_/crystsym.txt
SPDBV/_stuff_/default.PP
SPDBV/_stuff_/grmparam/angles.prm
d15 1
d17 81
a97 3
SPDBV/_stuff_/grmparam/nbondsel.prm
SPDBV/_stuff_/grmparam/nonbonds.prm
SPDBV/_stuff_/grmparam/torsion.prm
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SPDBV/_stuff_/grmtopol/SEP.tpl
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SPDBV/_stuff_/grmtopol/THR.tpl
SPDBV/_stuff_/grmtopol/TPO.tpl
SPDBV/_stuff_/grmtopol/TRP.tpl
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SPDBV/_stuff_/text/activsit.htm
SPDBV/_stuff_/text/amber_pl.htm
SPDBV/_stuff_/text/ambertut.htm
SPDBV/_stuff_/text/build.htm
SPDBV/_stuff_/text/charm_pl.htm
SPDBV/_stuff_/text/charmtut.htm
SPDBV/_stuff_/text/color.htm
SPDBV/_stuff_/text/cshrc.htm
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SPDBV/_stuff_/text/fabp.htm
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SPDBV/_stuff_/text/gallery.htm
SPDBV/_stuff_/text/gromo_pl.htm
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SPDBV/_stuff_/text/pov.htm
SPDBV/_stuff_/text/loop.htm
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SPDBV/_stuff_/text/minim.htm
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SPDBV/_stuff_/text/moving.htm
SPDBV/_stuff_/text/mutation.htm
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SPDBV/_stuff_/text/tips.htm
SPDBV/_stuff_/text/toolmenu.htm
SPDBV/_stuff_/text/tools.htm
SPDBV/_stuff_/text/torsion.htm
SPDBV/_stuff_/text/transfo.htm
SPDBV/_stuff_/text/tutorial.htm
SPDBV/_stuff_/text/xsymtut.htm
SPDBV/_stuff_/readme.txt
SPDBV/_stuff_/smalloop.txt
SPDBV/_stuff_/tinyloop.txt
SPDBV/bin/spdbv.IRIX
SPDBV/bin/spdbv.Linux
SPDBV/bin/spdbv.sh
SPDBV/readme.txt
SPDBV/spdbv37b1.txt
SPDBV/spdbv37b2.txt
d245 2
d248 3
a252 1
@@dirrm SPDBV/_stuff_/text
a253 1
@@dirrm SPDBV/bin
@

