head	1.1;
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	RELEASE_8_3_0:1.1
	RELEASE_9_0_0:1.1
	RELEASE_7_4_0:1.1
	RELEASE_8_2_0:1.1
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	RELEASE_8_1_0:1.1
	RELEASE_7_3_0:1.1
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comment	@# @;


1.1
date	2008.06.21.00.01.57;	author lippe;	state Exp;
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desc
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1.1
log
@SSAHA is a software tool for very fast matching and alignment of DNA
sequences. It stands for Sequence Search and Alignment by Hashing
Algorithm. It achieves its fast search speed by converting sequence
information into a `hash table' data structure, which can then be
searched very rapidly for matches.

WWW: http://www.sanger.ac.uk/Software/analysis/SSAHA/

PR:		ports/124525
Submitted by:	Fernan Aguero <fernan@@iib.unsam.edu.ar>
Approved by:	gabor (mentor, implicit)
@
text
@--- ./Binary/makefile.orig	2008-06-12 16:00:19.000000000 -0300
+++ ./Binary/makefile	2008-06-12 16:00:43.000000000 -0300
@@@@ -11,10 +11,10 @@@@
 # copy of the SSAHA directory structure you should be able to make files
 # straight away.
 # 
-# SSAHA_TOP_DIR=$(SSAHA_DIR?$(SSAHA_DIR):$(PWD)/../)
+SSAHA_TOP_DIR=$(PWD)/../
 # Above is a nice idea, but syntax doesn't work for all versions of make
 # so must define CURRENT_SSAHA_VERSION, eg in your .cshrc file - TC 14.3.01
-SSAHA_TOP_DIR=$(CURRENT_SSAHA_VERSION)
+# SSAHA_TOP_DIR=$(CURRENT_SSAHA_VERSION)
 
 GLOBAL_DIR=${SSAHA_TOP_DIR}/Global
 SEQ_DIR=${SSAHA_TOP_DIR}/SequenceReader
@
