head	1.7;
access;
symbols
	RELEASE_8_3_0:1.6
	RELEASE_9_0_0:1.6
	RELEASE_7_4_0:1.6
	RELEASE_8_2_0:1.6
	RELEASE_6_EOL:1.6
	RELEASE_8_1_0:1.6
	RELEASE_7_3_0:1.6
	RELEASE_8_0_0:1.6
	RELEASE_7_2_0:1.6
	RELEASE_7_1_0:1.6
	RELEASE_6_4_0:1.6
	RELEASE_5_EOL:1.6
	RELEASE_7_0_0:1.4
	RELEASE_6_3_0:1.4
	PRE_XORG_7:1.4
	RELEASE_4_EOL:1.3
	RELEASE_6_2_0:1.3
	RELEASE_6_1_0:1.3
	RELEASE_5_5_0:1.3
	RELEASE_6_0_0:1.3
	RELEASE_5_4_0:1.3
	RELEASE_4_11_0:1.3
	RELEASE_5_3_0:1.3
	RELEASE_4_10_0:1.3
	RELEASE_5_2_1:1.3
	RELEASE_5_2_0:1.3
	RELEASE_4_9_0:1.3
	RELEASE_5_1_0:1.3
	RELEASE_4_8_0:1.3
	RELEASE_5_0_0:1.2
	RELEASE_4_7_0:1.1
	RELEASE_4_6_2:1.1
	RELEASE_4_6_1:1.1
	RELEASE_4_6_0:1.1
	RELEASE_5_0_DP1:1.1;
locks; strict;
comment	@# @;


1.7
date	2012.11.17.05.54.53;	author svnexp;	state Exp;
branches;
next	1.6;

1.6
date	2008.05.22.00.49.42;	author miwi;	state Exp;
branches;
next	1.5;

1.5
date	2008.05.15.02.50.21;	author erwin;	state Exp;
branches;
next	1.4;

1.4
date	2007.03.10.20.20.10;	author linimon;	state Exp;
branches;
next	1.3;

1.3
date	2003.02.21.11.01.37;	author knu;	state Exp;
branches;
next	1.2;

1.2
date	2002.11.04.01.47.57;	author edwin;	state Exp;
branches;
next	1.1;

1.1
date	2002.03.27.14.18.47;	author wjv;	state Exp;
branches;
next	;


desc
@@


1.7
log
@Switch exporter over
@
text
@# New ports collection makefile for:	tRNAscan-SE
# Date created:				15 Jan 2002
# Whom:					chuynh@@biolateral.com.au
#
# $FreeBSD: head/biology/tRNAscan-SE/Makefile 300895 2012-07-14 12:56:14Z beat $
#

PORTNAME=	tRNAscan-SE
PORTVERSION=	1.23
PORTREVISION=	1
CATEGORIES=	biology
MASTER_SITES=	ftp://selab.janelia.org/pub/software/tRNAscan-SE/
EXTRACT_SUFX=	.tar.Z

MAINTAINER=	ports@@FreeBSD.org
COMMENT=	An improved tool for transfer RNA detection

USE_PERL5=	yes
MAKE_ARGS=	BINDIR="${PREFIX}/bin" \
		LIBDIR="${DATADIR}" \
		CC="${CC}" \
		CFLAGS="${CFLAGS}"

MAN1=		tRNAscan-SE.1

post-patch:
	@@${REINPLACE_CMD} -e 's|tRNAscanSE setpaths|tRNAscanSE|g ; \
		 s|if tRNAscan-SE|if ./tRNAscan-SE|g' ${WRKSRC}/Makefile

do-install:
.for f in covels-SE coves-SE eufindtRNA trnascan-1.4
	${INSTALL_PROGRAM} ${WRKSRC}/${f} ${PREFIX}/bin
.endfor
	${INSTALL_SCRIPT} ${WRKSRC}/tRNAscan-SE ${PREFIX}/bin
	${INSTALL_MAN} ${WRKSRC}/tRNAscan-SE.man ${MANPREFIX}/man/man1/tRNAscan-SE.1
	@@${MKDIR} ${DATADIR}
.for f in TPCsignal Dsignal *.cm gcode.*
	${INSTALL_DATA} ${WRKSRC}/${f} ${DATADIR}
.endfor

#
# have to install before testing as path to data files is hardcoded
#
post-install:
	@@ cd ${WRKSRC} && $(MAKE) testrun
.if !defined(NOPORTDOCS)
	@@${MKDIR} ${DOCSDIR}
	${INSTALL_DATA} ${WRKSRC}/Manual.ps ${DOCSDIR}
.endif

.include <bsd.port.mk>
@


1.6
log
@- Update MASTER_SITES and WWW: line
- Support CC/CFLAGS properly
- Strip binary

PR:		123866
Submitted by:	Ports Fury
@
text
@d5 1
a5 1
# $FreeBSD$
@


1.5
log
@Update to 1.23
@
text
@d10 1
d12 1
a12 1
MASTER_SITES=	ftp://ftp.genetics.wustl.edu/pub/eddy/software/
d18 6
d26 14
a39 1
USE_PERL5=	yes
d45 1
a45 1
		@@ cd ${WRKSRC} && $(MAKE) testrun
@


1.4
log
@Reset chuynh@@biolateral.com.au: address bounces.

Hat:		portmgr
@
text
@d9 1
a9 1
PORTVERSION=	1.21
@


1.3
log
@De-pkg-comment.
@
text
@d14 1
a14 1
MAINTAINER=	chuynh@@biolateral.com.au
@


1.2
log
@Port needs perl to build.
Seen on: bento
@
text
@d15 1
@


1.1
log
@Add tRNAscan-SE 1.21, an improved tool for transfer RNA detection.

PR:		33853
Submitted by:	chuynh@@biolateral.com.au
@
text
@d18 2
@

