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1.2
date	2008.05.22.00.49.42;	author miwi;	state dead;
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next	1.1;

1.1
date	2002.03.27.14.18.49;	author wjv;	state Exp;
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desc
@@


1.2
log
@- Update MASTER_SITES and WWW: line
- Support CC/CFLAGS properly
- Strip binary

PR:		123866
Submitted by:	Ports Fury
@
text
@--- Makefile.orig	Sat Oct  7 00:16:41 2000
+++ Makefile	Thu Dec 20 17:26:37 2001
@@@@ -19,10 +19,11 @@@@
 ## (this could be 'perl5' or otherwise on some systems)
 PERLBIN = perl
 
+prefix  = ${PREFIX}
 ## where you want things installed
-BINDIR  = $(HOME)/bin
-LIBDIR  = $(HOME)/lib/tRNAscan-SE
-MANDIR  = $(HOME)/man
+BINDIR  = $(prefix)/bin
+LIBDIR  = $(prefix)/share/tRNAscan-SE
+MANDIR  = $(prefix)/man
 
 ## NOTE !!  If you later manually move the location of 
 ## binaries or data files in the BINDIR or LIBDIR directories,
@@@@ -106,7 +107,7 @@@@
 
 MPOBJ = mpviterbi.o mp-dbviterbi.o
 
-all: 	$(PROGS) tRNAscanSE setpaths
+all: 	$(PROGS) tRNAscanSE
 
 covels-SE:  $(OBJ) scan_main.o
 	$(CC) $(CFLAGS) $(RFLAGS) -o covels-SE scan_main.o $(OBJ) $(LIBS)
@@@@ -178,7 +179,7 @@@@
 	@@echo ""
 	@@rm -f testrun.out
 	@@echo "tRNAscan-SE -d -y -o testrun.out Demo/F22B7.fa"
-	@@if tRNAscan-SE -d -y -o testrun.out Demo/F22B7.fa; \
+	@@if ./tRNAscan-SE -d -y -o testrun.out Demo/F22B7.fa; \
 	then echo ""; \
 	else echo "tRNAscan-SE did NOT complete properly."; fi
 	@@if diff testrun.out testrun.ref; \
@


1.1
log
@Add tRNAscan-SE 1.21, an improved tool for transfer RNA detection.

PR:		33853
Submitted by:	chuynh@@biolateral.com.au
@
text
@@

