head	1.17;
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	GLJOHNS:1.1.1;
locks; strict;
comment	@# @;


1.17
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desc
@@


1.17
log
@## SVN ## Exported commit - http://svnweb.freebsd.org/changeset/base/308054
## SVN ## CVS IS DEPRECATED: http://wiki.freebsd.org/CvsIsDeprecated
## SVN ##
## SVN ## ------------------------------------------------------------------------
## SVN ## r308054 | sperber | 2012-12-01 00:00:43 +0000 (Sat, 01 Dec 2012) | 10 lines
## SVN ##
## SVN ## - Update to version 6.1.01
## SVN ## - Add MAKE_JOBS_SAFE
## SVN ## - Convert to optionsng
## SVN ## - Trim Makefile header
## SVN ##
## SVN ## PR:           ports/171971
## SVN ## Submitted by: KATO Tsuguru <tkato432 _at_ yahoo.com>
## SVN ## Approved by:  beat (mentor)
## SVN ## Feature safe: yes
## SVN ##
## SVN ## ------------------------------------------------------------------------
## SVN ##
@
text
@bin/alchemy
bin/analyze
bin/anneal
bin/archive
bin/correlate
bin/crystal
bin/diffuse
bin/distgeom
bin/document
bin/dynamic
bin/gda
bin/intedit
bin/intxyz
bin/minimize
bin/minirot
bin/minrigid
bin/molxyz
bin/monte
bin/newton
bin/newtrot
bin/nucleic
bin/optimize
bin/optirot
bin/optrigid
bin/path
bin/pdbxyz
bin/polarize
bin/poledit
bin/potential
bin/prmedit
bin/protein
bin/pss
bin/pssrigid
bin/pssrot
bin/radial
bin/saddle
bin/scan
bin/sniffer
bin/spacefill
bin/spectrum
bin/superpose
bin/sybylxyz
bin/testgrad
bin/testhess
bin/testpair
bin/testrot
bin/timer
bin/timerot
bin/torsfit
bin/valence
bin/vibbig
bin/vibrate
bin/vibrot
bin/xtalfit
bin/xtalmin
bin/xyzedit
bin/xyzint
bin/xyzpdb
bin/xyzsybyl
%%PORTDOCS%%%%DOCSDIR%%/0README
%%PORTDOCS%%%%DOCSDIR%%/ffe-guide.pdf
%%PORTDOCS%%%%DOCSDIR%%/guide.pdf
%%PORTDOCS%%%%DOCSDIR%%/license.pdf
%%PORTDOCS%%%%DOCSDIR%%/license.txt
%%PORTDOCS%%%%DOCSDIR%%/summary.pdf
%%PORTDOCS%%%%DOCSDIR%%/summary.txt
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/0README
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/alatet.int
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/alatet.key
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/alatet.seq
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/alatet.xyz
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/alkane.key
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/alkane.xyz
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/ammonia.key
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/ammonia.xyz
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/amoeba.key
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/amoeba.xyz
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/arach.int
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/arach.key
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/arach.xyz
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/azulene.int
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/azulene.key
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/azulene.xyz
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/bdna.int
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/bdna.key
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/bdna.make
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/bdna.pdb
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/bdna.seq
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/bdna.xyz
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/bearing.key
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/bearing.xyz
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/bearing2.key
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/benzamidine.key
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/benzamidine.xyz
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/benzbox.key
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/benzbox.xyz
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/benzene.int
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/benzene.key
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/benzene.xyz
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/book.key
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/book.xyz
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/bowl.int
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/bowl.key
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/bowl.xyz
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/bowl2.key
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/bowl2.xyz
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/bowl3.key
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/bowl3.xyz
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/bucky.int
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/bucky.key
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%%PORTEXAMPLES%%%%EXAMPLESDIR%%/butane.int
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/butane.key
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%%PORTEXAMPLES%%%%EXAMPLESDIR%%/butane2.int
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/butane2.key
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%%PORTEXAMPLES%%%%EXAMPLESDIR%%/butanex.key
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%%PORTEXAMPLES%%%%EXAMPLESDIR%%/butopls.int
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/butopls.key
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%%PORTEXAMPLES%%%%EXAMPLESDIR%%/butopls2.int
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/butopls2.key
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/butopls2.xyz
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/c5.int
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%%PORTEXAMPLES%%%%EXAMPLESDIR%%/c5.seq
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/c5.xyz
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/c7a.int
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/c7a.key
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/c7a.seq
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%%PORTEXAMPLES%%%%EXAMPLESDIR%%/c7e.int
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/c7e.key
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%%PORTEXAMPLES%%%%EXAMPLESDIR%%/c7e.xyz
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/cage.key
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/cage.xyz
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/calmodulin.key
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/calmodulin.pdb
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/calmodulin.seq
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/calmodulin.xyz
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/cawater.key
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/cawater.xyz
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/cln025.key
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/cln025.make
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/cln025.pdb
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/cln025.seq
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/cln025.xyz
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/copper.key
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/copper.xyz
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/cpentene.key
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/cpentene.xyz
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/crambin.key
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/crambin.pdb
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/crambin.seq
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/crambin.xyz
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/crambinx.key
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/crambinx.xyz
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/crown.int
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/crown.key
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/crown.xyz
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/cychept.int
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/cychept.key
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/cychept.xyz
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/cyclo.int
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%%PORTEXAMPLES%%%%EXAMPLESDIR%%/cyclo2.int
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/cyclo2.key
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/cyclo2.xyz
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/cycprop.key
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/cycprop.xyz
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/dang.key
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/dang.xyz
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/deltorphin.int
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/deltorphin.key
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/deltorphin.make
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/deltorphin.seq
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/deltorphin.xyz
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/dhfr.key
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/dhfr.pdb
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/dhfr.seq
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/dhfr.xyz
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/dhfr2.key
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/dhfr2.seq
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/dhfr2.xyz
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/diamond.key
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/diamond.xyz
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/diene.int
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/diene.key
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/diene.xyz
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/dimethane.key
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/dimethane.xyz
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/dmp.key
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/dmp.xyz
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/enkephalin.int
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/enkephalin.key
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/enkephalin.make
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/enkephalin.seq
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/enkephalin.xyz
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/ermer.int
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/ermer.key
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/ermer.xyz
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/ester.key
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/ester.xyz
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/ethane.int
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/ethane.key
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/ethane.xyz
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/ethanol.int
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/ethanol.key
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/ethanol.xyz
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/ether.key
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/ether.xyz
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/etherbox.dyn
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/etherbox.key
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/etherbox.xyz
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/ethylene.int
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/ethylene.key
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/ethylene.xyz
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/flane.int
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/flane.key
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/flane.xyz
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/form.key
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/form.xyz
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/formbig.key
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/formbig.xyz
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/formbox.dyn
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/formbox.key
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/formbox.xyz
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/formopls.dyn
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/formopls.key
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/formopls.xyz
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/furan.int
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/furan.key
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/furan.xyz
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/glucose.key
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/glucose.xyz
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/glycerol.dyn
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/glycerol.key
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/glycerol.xyz
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/graphite.key
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/graphite.xyz
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/helix.dyn
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/helix.key
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/helix.xyz
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/heme.key
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/heme.xyz
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/hexane.int
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/hexane.key
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/hexane.xyz
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/hexanes.dyn
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/hexanes.key
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/hexanes.xyz
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/imidazole.int
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/imidazole.key
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/imidazole.xyz
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/imine.int
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/imine.key
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/imine.xyz
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/indole.key
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/indole.xyz
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/lactam.key
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/lactam.xyz
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/lipid.key
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/lipid.xyz
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/lj38.key
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/lj38.xyz
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/melittin.key
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/melittin.pdb
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/melittin.seq
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/melittin.xyz
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/membrane.key
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/membrane.xyz
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/meohbox.dyn
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/meohbox.key
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/meohbox.xyz
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/methane.int
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/methane.key
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/methane.xyz
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/methanol.key
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/methanol.xyz
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/mgwater.key
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/mgwater.xyz
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/mm3.key
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/mm3.xyz
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/nacl.key
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/nacl.xyz
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/nada.key
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/nada.xyz
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/naphthalene.int
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/naphthalene.key
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/naphthalene.xyz
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/naphthax.frac
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/naphthax.key
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/naphthax.xyz
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/nitrile.key
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/nitrile.xyz
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/nitrogen.dyn
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/nitrogen.key
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/nitrogen.xyz
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/nma.int
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/nma.key
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/nma.xyz
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/nmabox.dyn
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/nmabox.key
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/nmabox.xyz
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/nmf.key
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/nmf.xyz
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/nstilbene.int
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/nstilbene.key
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/nstilbene.xyz
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/octane.int
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/octane.key
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/octane.xyz
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/octane2.int
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/octane2.key
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/octane2.xyz
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/octene.dyn
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/octene.key
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/octene.xyz
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/palmitate.int
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/palmitate.key
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/palmitate.xyz
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/pentane.frac
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/pentane.key
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/pentane.xyz
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/peptide.int
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/peptide.key
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/peptide.make
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/peptide.pdb
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/peptide.seq
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/peptide.xyz
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/phenanth.key
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/phenanth.xyz
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/photo.key
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/photo.pdb
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/photo.seq
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/photo.xyz
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/pol3.key
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/pol3.xyz
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/polyala.key
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/polyala.xyz
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/prism.key
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/prism.xyz
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/propane.key
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/propane.xyz
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/propellane.int
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/propellane.key
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/propellane.xyz
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%%PORTEXAMPLES%%%%EXAMPLESDIR%%/propyne.xyz
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%%PORTEXAMPLES%%%%EXAMPLESDIR%%/waterglobe.key
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/waterglobe.xyz
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/waterhuge.key
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%%PORTEXAMPLES%%%%EXAMPLESDIR%%/waterslab.dyn
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/waterslab.key
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/waterslab.xyz
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/watersmall.dyn
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/watersmall.key
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/watersmall.xyz
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/watertiny.dyn
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/watertiny.key
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%%PORTEXAMPLES%%%%EXAMPLESDIR%%/white.int
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%%PORTDATA%%%%DATADIR%%/bench/bench1.key
%%PORTDATA%%%%DATADIR%%/bench/bench1.run
%%PORTDATA%%%%DATADIR%%/bench/bench1.xyz
%%PORTDATA%%%%DATADIR%%/bench/bench2.key
%%PORTDATA%%%%DATADIR%%/bench/bench2.run
%%PORTDATA%%%%DATADIR%%/bench/bench2.xyz
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%%PORTDATA%%%%DATADIR%%/bench/bench3.run
%%PORTDATA%%%%DATADIR%%/bench/bench3.xyz
%%PORTDATA%%%%DATADIR%%/bench/bench4.dyn0
%%PORTDATA%%%%DATADIR%%/bench/bench4.key
%%PORTDATA%%%%DATADIR%%/bench/bench4.log
%%PORTDATA%%%%DATADIR%%/bench/bench4.run
%%PORTDATA%%%%DATADIR%%/bench/bench4.xyz
%%PORTDATA%%%%DATADIR%%/bench/bench5.dyn0
%%PORTDATA%%%%DATADIR%%/bench/bench5.key
%%PORTDATA%%%%DATADIR%%/bench/bench5.log
%%PORTDATA%%%%DATADIR%%/bench/bench5.run
%%PORTDATA%%%%DATADIR%%/bench/bench5.xyz
%%PORTDATA%%%%DATADIR%%/bench/bench6.key
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%%PORTDATA%%%%DATADIR%%/bench/bench6.run
%%PORTDATA%%%%DATADIR%%/bench/bench6.xyz
%%PORTDATA%%%%DATADIR%%/bench/bench7.key
%%PORTDATA%%%%DATADIR%%/bench/bench7.log
%%PORTDATA%%%%DATADIR%%/bench/bench7.run
%%PORTDATA%%%%DATADIR%%/bench/bench7.xyz
%%PORTDATA%%%%DATADIR%%/bench/results-2.3
%%PORTDATA%%%%DATADIR%%/bench/results-2.4
%%PORTDATA%%%%DATADIR%%/bench/results-2.9
%%PORTDATA%%%%DATADIR%%/bench/results-3.1
%%PORTDATA%%%%DATADIR%%/bench/results-3.2
%%PORTDATA%%%%DATADIR%%/bench/results-3.4
%%PORTDATA%%%%DATADIR%%/bench/results-3.5
%%PORTDATA%%%%DATADIR%%/bench/results-3.7
%%PORTDATA%%%%DATADIR%%/bench/results-3.8
%%PORTDATA%%%%DATADIR%%/bench/results-3.9
%%PORTDATA%%%%DATADIR%%/bench/results-4.0
%%PORTDATA%%%%DATADIR%%/bench/results-4.1
%%PORTDATA%%%%DATADIR%%/bench/results-4.2
%%PORTDATA%%%%DATADIR%%/bench/results-4.3
%%PORTDATA%%%%DATADIR%%/bench/results-5.0
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%%DATADIR%%/params/amber94.prm
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%%DATADIR%%/params/amber99.prm
%%DATADIR%%/params/amber99sb.prm
%%DATADIR%%/params/amoeba04.prm
%%DATADIR%%/params/amoeba09.prm
%%DATADIR%%/params/amoebabio09.prm
%%DATADIR%%/params/amoebapro04.prm
%%DATADIR%%/params/charmm19.prm
%%DATADIR%%/params/charmm22.prm
%%DATADIR%%/params/charmm22cmap.prm
%%DATADIR%%/params/dang.prm
%%DATADIR%%/params/hoch.prm
%%DATADIR%%/params/mm2.prm
%%DATADIR%%/params/mm3.prm
%%DATADIR%%/params/mm3pro.prm
%%DATADIR%%/params/mmff.prm
%%DATADIR%%/params/oplsaa.prm
%%DATADIR%%/params/oplsaal.prm
%%DATADIR%%/params/oplsua.prm
%%DATADIR%%/params/smoothaa.prm
%%DATADIR%%/params/smoothua.prm
%%DATADIR%%/params/tiny.prm
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%%PORTDATA%%%%DATADIR%%/test/0README
%%PORTDATA%%%%DATADIR%%/test/anion.dat
%%PORTDATA%%%%DATADIR%%/test/anion.dyn0
%%PORTDATA%%%%DATADIR%%/test/anion.key
%%PORTDATA%%%%DATADIR%%/test/anion.log
%%PORTDATA%%%%DATADIR%%/test/anion.run
%%PORTDATA%%%%DATADIR%%/test/anion.xyz
%%PORTDATA%%%%DATADIR%%/test/argon.1st
%%PORTDATA%%%%DATADIR%%/test/argon.key
%%PORTDATA%%%%DATADIR%%/test/argon.log
%%PORTDATA%%%%DATADIR%%/test/argon.run
%%PORTDATA%%%%DATADIR%%/test/cluster.dat
%%PORTDATA%%%%DATADIR%%/test/cluster.key
%%PORTDATA%%%%DATADIR%%/test/cluster.log
%%PORTDATA%%%%DATADIR%%/test/cluster.run
%%PORTDATA%%%%DATADIR%%/test/cluster.xyz
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%%PORTDATA%%%%DATADIR%%/test/crambin.pdb
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%%PORTDATA%%%%DATADIR%%/test/cyclohex.chair
%%PORTDATA%%%%DATADIR%%/test/cyclohex.key
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%%PORTDATA%%%%DATADIR%%/test/dhfr.dyn
%%PORTDATA%%%%DATADIR%%/test/dhfr.key
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%%PORTDATA%%%%DATADIR%%/test/dhfr.run
%%PORTDATA%%%%DATADIR%%/test/dhfr.xyz
%%PORTDATA%%%%DATADIR%%/test/dialanine.key
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%%PORTDATA%%%%DATADIR%%/test/dialanine.run
%%PORTDATA%%%%DATADIR%%/test/dialanine.xyz
%%PORTDATA%%%%DATADIR%%/test/enkephalin.dat
%%PORTDATA%%%%DATADIR%%/test/enkephalin.key
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%%PORTDATA%%%%DATADIR%%/test/enkephalin.run
%%PORTDATA%%%%DATADIR%%/test/ethanol.000
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%%PORTDATA%%%%DATADIR%%/test/ethanol.040
%%PORTDATA%%%%DATADIR%%/test/ethanol.060
%%PORTDATA%%%%DATADIR%%/test/ethanol.080
%%PORTDATA%%%%DATADIR%%/test/ethanol.100
%%PORTDATA%%%%DATADIR%%/test/ethanol.120
%%PORTDATA%%%%DATADIR%%/test/ethanol.140
%%PORTDATA%%%%DATADIR%%/test/ethanol.160
%%PORTDATA%%%%DATADIR%%/test/ethanol.180
%%PORTDATA%%%%DATADIR%%/test/ethanol.dat
%%PORTDATA%%%%DATADIR%%/test/ethanol.key
%%PORTDATA%%%%DATADIR%%/test/ethanol.log
%%PORTDATA%%%%DATADIR%%/test/ethanol.run
%%PORTDATA%%%%DATADIR%%/test/ethanol.xyz
%%PORTDATA%%%%DATADIR%%/test/formamide.cell
%%PORTDATA%%%%DATADIR%%/test/formamide.dat
%%PORTDATA%%%%DATADIR%%/test/formamide.key
%%PORTDATA%%%%DATADIR%%/test/formamide.log
%%PORTDATA%%%%DATADIR%%/test/formamide.run
%%PORTDATA%%%%DATADIR%%/test/gpcr.blk
%%PORTDATA%%%%DATADIR%%/test/gpcr.key
%%PORTDATA%%%%DATADIR%%/test/gpcr.log
%%PORTDATA%%%%DATADIR%%/test/gpcr.run
%%PORTDATA%%%%DATADIR%%/test/gpcr.xyz
%%PORTDATA%%%%DATADIR%%/test/helix.1st
%%PORTDATA%%%%DATADIR%%/test/helix.key
%%PORTDATA%%%%DATADIR%%/test/helix.log
%%PORTDATA%%%%DATADIR%%/test/helix.run
%%PORTDATA%%%%DATADIR%%/test/ifabp.dat
%%PORTDATA%%%%DATADIR%%/test/ifabp.key
%%PORTDATA%%%%DATADIR%%/test/ifabp.log
%%PORTDATA%%%%DATADIR%%/test/ifabp.run
%%PORTDATA%%%%DATADIR%%/test/ifabp.xyz
%%PORTDATA%%%%DATADIR%%/test/salt.cell
%%PORTDATA%%%%DATADIR%%/test/salt.key
%%PORTDATA%%%%DATADIR%%/test/salt.log
%%PORTDATA%%%%DATADIR%%/test/salt.run
%%PORTDATA%%%%DATADIR%%/test/tetraala.dat
%%PORTDATA%%%%DATADIR%%/test/tetraala.key
%%PORTDATA%%%%DATADIR%%/test/tetraala.log
%%PORTDATA%%%%DATADIR%%/test/tetraala.run
%%PORTDATA%%%%DATADIR%%/test/water.key
%%PORTDATA%%%%DATADIR%%/test/water.log
%%PORTDATA%%%%DATADIR%%/test/water.pot
%%PORTDATA%%%%DATADIR%%/test/water.run
%%PORTDATA%%%%DATADIR%%/test/water.xyz
%%DATADIR%%/tinker.txt
%%PORTDATA%%@@dirrm %%DATADIR%%/test
@@dirrm %%DATADIR%%/params
%%PORTDATA%%@@dirrm %%DATADIR%%/bench
@@dirrm %%DATADIR%%
%%PORTEXAMPLES%%@@dirrm %%EXAMPLESDIR%%
%%PORTDOCS%%@@dirrm %%DOCSDIR%%
@


1.16
log
@- Update to 5.1.09

PR:		154359
Submitted by:	Ruslan Mahmatkhanov <cvs-src@@yandex.ru>
Feature safe:	yes
@
text
@d17 1
d49 1
a62 1
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d67 418
a484 403
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@


1.15
log
@- Unbreak by upgrading to 4.2;

- Use DIST_SUBDIR because tarball is not versioned;

- Add sysdate to PORTVERSION to handle minor revisions;

- Do some cleaning.
@
text
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d540 13
a552 38
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%%PORTDOCS%%%%DATADIR%%/test/furan.int
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%%PORTDOCS%%%%DATADIR%%/test/graphite.key
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d554 10
a563 131
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%%PORTDOCS%%%%DATADIR%%/test/pyrrole.int
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%%PORTDOCS%%%%DATADIR%%/test/retinoic.key
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%%PORTDOCS%%%%DATADIR%%/test/skunk.key
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%%PORTDOCS%%%%DATADIR%%/test/spc.key
%%PORTDOCS%%%%DATADIR%%/test/spc.xyz
%%PORTDOCS%%%%DATADIR%%/test/sterol.key
%%PORTDOCS%%%%DATADIR%%/test/sterol.xyz
%%PORTDOCS%%%%DATADIR%%/test/styrene.int
%%PORTDOCS%%%%DATADIR%%/test/styrene.key
%%PORTDOCS%%%%DATADIR%%/test/styrene.xyz
%%PORTDOCS%%%%DATADIR%%/test/terphenyl.key
%%PORTDOCS%%%%DATADIR%%/test/terphenyl.xyz
%%PORTDOCS%%%%DATADIR%%/test/tfe.key
%%PORTDOCS%%%%DATADIR%%/test/tfe.xyz
%%PORTDOCS%%%%DATADIR%%/test/thiadiene.int
%%PORTDOCS%%%%DATADIR%%/test/thiadiene.key
%%PORTDOCS%%%%DATADIR%%/test/thiadiene.xyz
%%PORTDOCS%%%%DATADIR%%/test/thiophene.int
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%%PORTDOCS%%%%DATADIR%%/test/thiophene.xyz
%%PORTDOCS%%%%DATADIR%%/test/thr.int
%%PORTDOCS%%%%DATADIR%%/test/thr.key
%%PORTDOCS%%%%DATADIR%%/test/thr.xyz
%%PORTDOCS%%%%DATADIR%%/test/tip3f.key
%%PORTDOCS%%%%DATADIR%%/test/tip3f.xyz
%%PORTDOCS%%%%DATADIR%%/test/tip3p.key
%%PORTDOCS%%%%DATADIR%%/test/tip3p.xyz
%%PORTDOCS%%%%DATADIR%%/test/tip4f.key
%%PORTDOCS%%%%DATADIR%%/test/tip4f.xyz
%%PORTDOCS%%%%DATADIR%%/test/tip4p.key
%%PORTDOCS%%%%DATADIR%%/test/tip4p.xyz
%%PORTDOCS%%%%DATADIR%%/test/tip5p.key
%%PORTDOCS%%%%DATADIR%%/test/tip5p.xyz
%%PORTDOCS%%%%DATADIR%%/test/trpcage.key
%%PORTDOCS%%%%DATADIR%%/test/trpcage.pdb
%%PORTDOCS%%%%DATADIR%%/test/trpcage.seq
%%PORTDOCS%%%%DATADIR%%/test/trpcage.xyz
%%PORTDOCS%%%%DATADIR%%/test/water.int
d565 3
a568 19
%%PORTDOCS%%%%DATADIR%%/test/waterbig.key
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%%PORTDOCS%%%%DATADIR%%/test/waterbox.dyn
%%PORTDOCS%%%%DATADIR%%/test/waterbox.key
%%PORTDOCS%%%%DATADIR%%/test/waterbox.xyz
%%PORTDOCS%%%%DATADIR%%/test/waterdot.dyn
%%PORTDOCS%%%%DATADIR%%/test/waterdot.key
%%PORTDOCS%%%%DATADIR%%/test/waterdot.xyz
%%PORTDOCS%%%%DATADIR%%/test/waterhuge.key
%%PORTDOCS%%%%DATADIR%%/test/waterhuge.xyz
%%PORTDOCS%%%%DATADIR%%/test/watersmall.dyn
%%PORTDOCS%%%%DATADIR%%/test/watersmall.key
%%PORTDOCS%%%%DATADIR%%/test/watersmall.xyz
%%PORTDOCS%%%%DATADIR%%/test/watertiny.dyn
%%PORTDOCS%%%%DATADIR%%/test/watertiny.key
%%PORTDOCS%%%%DATADIR%%/test/watertiny.xyz
%%PORTDOCS%%%%DATADIR%%/test/white.int
%%PORTDOCS%%%%DATADIR%%/test/white.key
%%PORTDOCS%%%%DATADIR%%/test/white.xyz
d570 2
a571 2
%%PORTDOCS%%@@dirrm %%DOCSDIR%%
%%PORTDOCS%%@@dirrm share/examples/tinker
a572 3
@@dirrm %%DATADIR%%/params
%%WITH_VIEWER%%@@dirrm %%DATADIR%%/rasmol
%%PORTDOCS%%@@dirrm %%DATADIR%%/test
d574 2
@


1.14
log
@- Update checksum again, seems author removes .ps version of documentation
  from tarball
- Unmark broken, it builds for me just fine

Approved by:	adamw (mentor)
@
text
@d27 1
d59 1
d71 1
d121 344
a464 340
%%PORTDOCS%%share/tinker/bench/README
%%PORTDOCS%%share/tinker/bench/bench1.key
%%PORTDOCS%%share/tinker/bench/bench1.run
%%PORTDOCS%%share/tinker/bench/bench1.xyz
%%PORTDOCS%%share/tinker/bench/bench2.key
%%PORTDOCS%%share/tinker/bench/bench2.run
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%%PORTDOCS%%share/tinker/bench/results-2.3
%%PORTDOCS%%share/tinker/bench/results-2.4
%%PORTDOCS%%share/tinker/bench/results-2.9
%%PORTDOCS%%share/tinker/bench/results-3.1
%%PORTDOCS%%share/tinker/bench/results-3.2
%%PORTDOCS%%share/tinker/bench/results-3.4
%%PORTDOCS%%share/tinker/bench/results-3.5
%%PORTDOCS%%share/tinker/bench/results-3.7
%%PORTDOCS%%share/tinker/bench/results-3.8
%%PORTDOCS%%share/tinker/bench/results-3.9
%%PORTDOCS%%share/tinker/bench/results-4.0
%%PORTDOCS%%share/tinker/bench/results-4.1
share/tinker/params/README
share/tinker/params/amber94.prm
share/tinker/params/amber96.prm
share/tinker/params/amber98.prm
share/tinker/params/amber99.prm
share/tinker/params/amoeba.prm
share/tinker/params/charmm19.prm
share/tinker/params/charmm27.prm
share/tinker/params/dudek.prm
share/tinker/params/hoch.prm
share/tinker/params/mm2.prm
share/tinker/params/mm3.prm
share/tinker/params/mm3pro.prm
share/tinker/params/oplsaa.prm
share/tinker/params/oplsaal.prm
share/tinker/params/oplsua.prm
share/tinker/params/smooth.prm
share/tinker/params/smoothaa.prm
share/tinker/params/water.prm
%%WITH_VIEWER%%share/tinker/rasmol/rasmol.hlp
%%PORTDOCS%%share/tinker/test/README
%%PORTDOCS%%share/tinker/test/alkane.key
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%%PORTDOCS%%share/tinker/test/bdna.int
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%%PORTDOCS%%share/tinker/test/bdna.seq
%%PORTDOCS%%share/tinker/test/bdna.xyz
%%PORTDOCS%%share/tinker/test/bearing.key
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%%PORTDOCS%%share/tinker/test/bearing2.key
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%%PORTDOCS%%share/tinker/test/benzene.int
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%%PORTDOCS%%share/tinker/test/bowl.int
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%%PORTDOCS%%share/tinker/test/bowl2.key
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%%PORTDOCS%%share/tinker/test/bowl3.key
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%%PORTDOCS%%share/tinker/test/butopls.int
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%%PORTDOCS%%share/tinker/test/c5.key
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%%PORTDOCS%%share/tinker/test/c7a.key
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%%PORTDOCS%%share/tinker/test/calmodulin.key
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%%PORTDOCS%%share/tinker/test/ethanol.int
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%%PORTDOCS%%share/tinker/test/form.key
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%%PORTDOCS%%share/tinker/test/furan.int
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%%PORTDOCS%%share/tinker/test/glucose.key
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%%PORTDOCS%%share/tinker/test/hexane.xyz
%%PORTDOCS%%share/tinker/test/hexanes.dyn
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%%PORTDOCS%%share/tinker/test/imidazole.int
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%%PORTDOCS%%share/tinker/test/lactam.key
%%PORTDOCS%%share/tinker/test/lactam.xyz
%%PORTDOCS%%share/tinker/test/lipid.key
%%PORTDOCS%%share/tinker/test/lipid.xyz
%%PORTDOCS%%share/tinker/test/melittin.key
%%PORTDOCS%%share/tinker/test/melittin.pdb
%%PORTDOCS%%share/tinker/test/melittin.seq
%%PORTDOCS%%share/tinker/test/melittin.xyz
%%PORTDOCS%%share/tinker/test/membrane.key
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%%PORTDOCS%%share/tinker/test/methanol.key
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%%PORTDOCS%%share/tinker/test/mm3.key
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%%PORTDOCS%%share/tinker/test/nacl.key
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%%PORTDOCS%%share/tinker/test/nada.key
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%%PORTDOCS%%share/tinker/test/naphthalene.int
%%PORTDOCS%%share/tinker/test/naphthalene.key
%%PORTDOCS%%share/tinker/test/naphthalene.xyz
%%PORTDOCS%%share/tinker/test/nitrogen.dyn
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%%PORTDOCS%%share/tinker/test/nitrogen.xyz
%%PORTDOCS%%share/tinker/test/nma.int
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%%PORTDOCS%%share/tinker/test/nmabox.dyn
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%%PORTDOCS%%share/tinker/test/nstilbene.int
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%%PORTDOCS%%share/tinker/test/nstilbene.xyz
%%PORTDOCS%%share/tinker/test/octane.int
%%PORTDOCS%%share/tinker/test/octane.key
%%PORTDOCS%%share/tinker/test/octane.xyz
%%PORTDOCS%%share/tinker/test/octane2.int
%%PORTDOCS%%share/tinker/test/octane2.key
%%PORTDOCS%%share/tinker/test/octane2.xyz
%%PORTDOCS%%share/tinker/test/octene.key
%%PORTDOCS%%share/tinker/test/octene.xyz
%%PORTDOCS%%share/tinker/test/palmitate.int
%%PORTDOCS%%share/tinker/test/palmitate.key
%%PORTDOCS%%share/tinker/test/palmitate.xyz
%%PORTDOCS%%share/tinker/test/peptide.int
%%PORTDOCS%%share/tinker/test/peptide.key
%%PORTDOCS%%share/tinker/test/peptide.make
%%PORTDOCS%%share/tinker/test/peptide.pdb
%%PORTDOCS%%share/tinker/test/peptide.seq
%%PORTDOCS%%share/tinker/test/peptide.xyz
%%PORTDOCS%%share/tinker/test/phenanth.key
%%PORTDOCS%%share/tinker/test/phenanth.xyz
%%PORTDOCS%%share/tinker/test/photo.key
%%PORTDOCS%%share/tinker/test/photo.pdb
%%PORTDOCS%%share/tinker/test/photo.seq
%%PORTDOCS%%share/tinker/test/photo.xyz
%%PORTDOCS%%share/tinker/test/pol3.key
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%%PORTDOCS%%share/tinker/test/polyala.key
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%%PORTDOCS%%share/tinker/test/propane.key
%%PORTDOCS%%share/tinker/test/propane.ray
%%PORTDOCS%%share/tinker/test/propane.xyz
%%PORTDOCS%%share/tinker/test/propellane.int
%%PORTDOCS%%share/tinker/test/propellane.key
%%PORTDOCS%%share/tinker/test/propellane.xyz
%%PORTDOCS%%share/tinker/test/propyne.key
%%PORTDOCS%%share/tinker/test/propyne.xyz
%%PORTDOCS%%share/tinker/test/pyridine.int
%%PORTDOCS%%share/tinker/test/pyridine.key
%%PORTDOCS%%share/tinker/test/pyridine.xyz
%%PORTDOCS%%share/tinker/test/pyrrole.int
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%%PORTDOCS%%share/tinker/test/retinoic.key
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%%PORTDOCS%%share/tinker/test/skunk.key
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%%PORTDOCS%%share/tinker/test/spc.key
%%PORTDOCS%%share/tinker/test/spc.xyz
%%PORTDOCS%%share/tinker/test/sterol.key
%%PORTDOCS%%share/tinker/test/sterol.xyz
%%PORTDOCS%%share/tinker/test/styrene.int
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%%PORTDOCS%%share/tinker/test/terphenyl.key
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%%PORTDOCS%%share/tinker/test/thiadiene.int
%%PORTDOCS%%share/tinker/test/thiadiene.key
%%PORTDOCS%%share/tinker/test/thiadiene.xyz
%%PORTDOCS%%share/tinker/test/thiophene.int
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%%PORTDOCS%%share/tinker/test/thr.int
%%PORTDOCS%%share/tinker/test/thr.key
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%%PORTDOCS%%share/tinker/test/tip3f.key
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%%PORTDOCS%%share/tinker/test/tip3p.key
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%%PORTDOCS%%share/tinker/test/tip4f.key
%%PORTDOCS%%share/tinker/test/tip4f.xyz
%%PORTDOCS%%share/tinker/test/tip4p.key
%%PORTDOCS%%share/tinker/test/tip4p.xyz
%%PORTDOCS%%share/tinker/test/tip5p.key
%%PORTDOCS%%share/tinker/test/tip5p.xyz
%%PORTDOCS%%share/tinker/test/trpcage.key
%%PORTDOCS%%share/tinker/test/trpcage.pdb
%%PORTDOCS%%share/tinker/test/trpcage.seq
%%PORTDOCS%%share/tinker/test/trpcage.xyz
%%PORTDOCS%%share/tinker/test/water.int
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%%PORTDOCS%%share/tinker/test/waterbig.key
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%%PORTDOCS%%share/tinker/test/waterbox.dyn
%%PORTDOCS%%share/tinker/test/waterbox.key
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%%PORTDOCS%%share/tinker/test/waterhuge.key
%%PORTDOCS%%share/tinker/test/waterhuge.xyz
%%PORTDOCS%%share/tinker/test/wateroct.dyn
%%PORTDOCS%%share/tinker/test/wateroct.key
%%PORTDOCS%%share/tinker/test/wateroct.xyz
%%PORTDOCS%%share/tinker/test/watersmall.dyn
%%PORTDOCS%%share/tinker/test/watersmall.key
%%PORTDOCS%%share/tinker/test/watersmall.xyz
%%PORTDOCS%%share/tinker/test/watertiny.dyn
%%PORTDOCS%%share/tinker/test/watertiny.key
%%PORTDOCS%%share/tinker/test/watertiny.xyz
%%PORTDOCS%%share/tinker/test/white.int
%%PORTDOCS%%share/tinker/test/white.key
%%PORTDOCS%%share/tinker/test/white.xyz
share/tinker/tinker.txt
d467 5
a471 5
%%PORTDOCS%%@@dirrm share/tinker/bench
@@dirrm share/tinker/params
%%WITH_VIEWER%%@@dirrm share/tinker/rasmol
%%PORTDOCS%%@@dirrm share/tinker/test
@@dirrm share/tinker
@


1.13
log
@Cosmetic fix: use %%DOCSDIR%% macro.
No functionally changes.

Submitted by:	Oleg Karachevtsev <ok@@etrust.ru>
A part of PR:	57992
@
text
@d45 4
a58 1
%%PORTDOCS%%%%DOCSDIR%%/guide.ps.gz
a60 1
%%PORTDOCS%%%%DOCSDIR%%/license.ps
a61 4
%%PORTDOCS%%%%DOCSDIR%%/logo-bind.pdf
%%PORTDOCS%%%%DOCSDIR%%/logo-bind.ps.gz
%%PORTDOCS%%%%DOCSDIR%%/logo.pdf
%%PORTDOCS%%%%DOCSDIR%%/logo.ps.gz
d68 1
a69 1
%%PORTDOCS%%%%DOCSDIR%%/summary.ps
d97 4
d149 1
d154 1
d164 1
d169 1
a170 2
%%PORTDOCS%%share/tinker/test/ala20.key
%%PORTDOCS%%share/tinker/test/ala20.xyz
d337 2
d341 2
d383 2
d403 2
d410 2
d421 2
d425 2
d462 1
@


1.12
log
@a) Forgot to update distinfo 52498
b) added LEGAL. author requests no distribution
   except from his FTP site
c) clean-ups for compiler optimization

Submitted by:	Glenn Johnson <gjohnson@@srrc.ars.usda.gov>
Pointy hat to:	maho; partially :)
@
text
@d53 20
a72 20
%%PORTDOCS%%share/doc/tinker/README
%%PORTDOCS%%share/doc/tinker/guide.pdf
%%PORTDOCS%%share/doc/tinker/guide.ps.gz
%%PORTDOCS%%share/doc/tinker/guide.txt
%%PORTDOCS%%share/doc/tinker/license.pdf
%%PORTDOCS%%share/doc/tinker/license.ps
%%PORTDOCS%%share/doc/tinker/license.txt
%%PORTDOCS%%share/doc/tinker/logo-bind.pdf
%%PORTDOCS%%share/doc/tinker/logo-bind.ps.gz
%%PORTDOCS%%share/doc/tinker/logo.pdf
%%PORTDOCS%%share/doc/tinker/logo.ps.gz
%%PORTDOCS%%share/doc/tinker/release-3.2
%%PORTDOCS%%share/doc/tinker/release-3.6
%%PORTDOCS%%share/doc/tinker/release-3.7
%%PORTDOCS%%share/doc/tinker/release-3.8
%%PORTDOCS%%share/doc/tinker/release-3.9
%%PORTDOCS%%share/doc/tinker/release-4.0
%%PORTDOCS%%share/doc/tinker/summary.pdf
%%PORTDOCS%%share/doc/tinker/summary.ps
%%PORTDOCS%%share/doc/tinker/summary.txt
d440 1
a440 1
%%PORTDOCS%%@@dirrm share/doc/tinker
@


1.11
log
@Maintainer update of biology/tinker port to version 4.0.

PR:		52498
Submitted by:	Glenn Johnson <gjohnson@@srrc.ars.usda.gov>
@
text
@d16 2
a47 2
bin/vibrot
bin/xtalfit
d60 2
d69 1
d146 1
d148 7
a154 2
share/tinker/params/amber.prm
share/tinker/params/charmm.prm
a158 1
share/tinker/params/opls.prm
d160 1
d169 2
a235 1
%%PORTDOCS%%share/tinker/test/crambin.super
a260 3
%%PORTDOCS%%share/tinker/test/diwater.key
%%PORTDOCS%%share/tinker/test/diwater.lin
%%PORTDOCS%%share/tinker/test/diwater.xyz
d295 3
a311 1
%%PORTDOCS%%share/tinker/test/hexanex.xyz
d369 4
d413 4
@


1.10
log
@Upgrade tinker to the latest revision

PR:		33425
Submitted by:	maintainer
@
text
@a15 2
bin/minrigid
bin/monte
d44 2
@


1.9
log
@Update to 3.9

PR:		30398
Submitted by:	MAINTAINER
@
text
@d17 1
d143 12
a154 13
%%PORTDOCS%%share/tinker/params/README
%%PORTDOCS%%share/tinker/params/amber.prm
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%%PORTDOCS%%share/tinker/params/dudek.prm
%%PORTDOCS%%share/tinker/params/hoch.prm
%%PORTDOCS%%share/tinker/params/mm2.prm
%%PORTDOCS%%share/tinker/params/mm3.prm
%%PORTDOCS%%share/tinker/params/mm3pro.prm
%%PORTDOCS%%share/tinker/params/opls.prm
%%PORTDOCS%%share/tinker/params/oplsaa.prm
%%PORTDOCS%%share/tinker/params/smooth.prm
%%PORTDOCS%%share/tinker/params/smoothaa.prm
%%PORTDOCS%%share/tinker/params/water.prm
d185 3
d208 6
a213 6
%%PORTDOCS%%share/tinker/test/c7ax.key
%%PORTDOCS%%share/tinker/test/c7ax.seq
%%PORTDOCS%%share/tinker/test/c7ax.xyz
%%PORTDOCS%%share/tinker/test/c7eq.key
%%PORTDOCS%%share/tinker/test/c7eq.seq
%%PORTDOCS%%share/tinker/test/c7eq.xyz
d251 3
d280 1
d302 1
d311 2
d317 2
d329 3
d360 2
d378 2
d416 3
d422 1
a422 1
%%PORTDOCS%%share/tinker/tinker.txt
d426 1
a426 1
%%PORTDOCS%%@@dirrm share/tinker/params
d428 1
a428 1
%%PORTDOCS%%@@dirrm share/tinker
@


1.8
log
@Add NOPORTDOCS support to pkg-plist
@
text
@d25 1
a52 1
%%PORTDOCS%%share/doc/tinker/announce.txt
d61 5
d112 20
a131 18
%%PORTDOCS%%share/tinker/bench/bench-1.key
%%PORTDOCS%%share/tinker/bench/bench-1.run
%%PORTDOCS%%share/tinker/bench/bench-1.xyz
%%PORTDOCS%%share/tinker/bench/bench-2.key
%%PORTDOCS%%share/tinker/bench/bench-2.run
%%PORTDOCS%%share/tinker/bench/bench-2.xyz
%%PORTDOCS%%share/tinker/bench/bench-3.key
%%PORTDOCS%%share/tinker/bench/bench-3.run
%%PORTDOCS%%share/tinker/bench/bench-3.xyz
%%PORTDOCS%%share/tinker/bench/bench-4.dyn0
%%PORTDOCS%%share/tinker/bench/bench-4.key
%%PORTDOCS%%share/tinker/bench/bench-4.log
%%PORTDOCS%%share/tinker/bench/bench-4.run
%%PORTDOCS%%share/tinker/bench/bench-4.xyz
%%PORTDOCS%%share/tinker/bench/bench-5.dyn0
%%PORTDOCS%%share/tinker/bench/bench-5.key
%%PORTDOCS%%share/tinker/bench/bench-5.run
%%PORTDOCS%%share/tinker/bench/bench-5.xyz
d141 1
a143 1
%%PORTDOCS%%share/tinker/params/amberN.prm
d145 1
a145 1
%%PORTDOCS%%share/tinker/params/emr.prm
a153 1
%%PORTDOCS%%share/tinker/params/tinker.prm
a171 1
%%PORTDOCS%%share/tinker/test/bearing.pdb
a173 1
%%PORTDOCS%%share/tinker/test/bearing2.pdb
d215 2
a219 1
%%PORTDOCS%%share/tinker/test/crambin.min
d239 4
a247 4
%%PORTDOCS%%share/tinker/test/diwater.key
%%PORTDOCS%%share/tinker/test/diwater.lin
%%PORTDOCS%%share/tinker/test/diwater.min
%%PORTDOCS%%share/tinker/test/diwater.xyz
d281 3
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d314 1
d334 1
a339 1
%%PORTDOCS%%share/tinker/test/peptide.min
a344 4
%%PORTDOCS%%share/tinker/test/photo.key
%%PORTDOCS%%share/tinker/test/photo.pdb
%%PORTDOCS%%share/tinker/test/photo.seq
%%PORTDOCS%%share/tinker/test/photo.xyz
d375 4
@


1.7
log
@Update distfile checksum (PORTREVISION bumped)

also:

* Change maintainer's email address.
* Remove support for older FreeBSD versions.

PR:		26710
Submitted by:	Glenn Johnson <gjohnson@@srrc.ars.usda.gov>
@
text
@d51 345
a395 345
share/doc/tinker/README
share/doc/tinker/announce.txt
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share/tinker/bench/results-2.3
share/tinker/bench/results-2.4
share/tinker/bench/results-2.9
share/tinker/bench/results-3.1
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share/tinker/bench/results-3.4
share/tinker/bench/results-3.5
share/tinker/bench/results-3.7
share/tinker/bench/results-3.8
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share/tinker/params/opls.prm
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share/tinker/test/palmitate.xyz
share/tinker/test/peptide.int
share/tinker/test/peptide.key
share/tinker/test/peptide.make
share/tinker/test/peptide.min
share/tinker/test/peptide.pdb
share/tinker/test/peptide.seq
share/tinker/test/peptide.xyz
share/tinker/test/phenanth.key
share/tinker/test/phenanth.xyz
share/tinker/test/photo.key
share/tinker/test/photo.pdb
share/tinker/test/photo.seq
share/tinker/test/photo.xyz
share/tinker/test/propane.key
share/tinker/test/propane.ray
share/tinker/test/propane.xyz
share/tinker/test/propellane.int
share/tinker/test/propellane.key
share/tinker/test/propellane.xyz
share/tinker/test/propyne.key
share/tinker/test/propyne.xyz
share/tinker/test/pyridine.int
share/tinker/test/pyridine.key
share/tinker/test/pyridine.xyz
share/tinker/test/pyrrole.int
share/tinker/test/pyrrole.key
share/tinker/test/pyrrole.xyz
share/tinker/test/retinoic.key
share/tinker/test/retinoic.xyz
share/tinker/test/sterol.key
share/tinker/test/sterol.xyz
share/tinker/test/styrene.int
share/tinker/test/styrene.key
share/tinker/test/styrene.xyz
share/tinker/test/thiadiene.int
share/tinker/test/thiadiene.key
share/tinker/test/thiadiene.xyz
share/tinker/test/thiophene.int
share/tinker/test/thiophene.key
share/tinker/test/thiophene.xyz
share/tinker/test/thr.int
share/tinker/test/thr.key
share/tinker/test/thr.xyz
share/tinker/test/tip5p.key
share/tinker/test/tip5p.xyz
share/tinker/test/water.int
share/tinker/test/water.key
share/tinker/test/water.xyz
share/tinker/test/waterbig.key
share/tinker/test/waterbig.xyz
share/tinker/test/waterbox.dyn
share/tinker/test/waterbox.key
share/tinker/test/waterbox.xyz
share/tinker/test/waterhuge.key
share/tinker/test/waterhuge.xyz
share/tinker/test/wateroct.dyn
share/tinker/test/wateroct.key
share/tinker/test/wateroct.xyz
share/tinker/test/watersmall.dyn
share/tinker/test/watersmall.key
share/tinker/test/watersmall.xyz
share/tinker/test/white.int
share/tinker/test/white.key
share/tinker/test/white.xyz
share/tinker/tinker.txt
@@dirrm share/doc/tinker
@@dirrm share/examples/tinker
@@dirrm share/tinker/bench
@@dirrm share/tinker/params
@@dirrm share/tinker/test
@@dirrm share/tinker
@


1.6
log
@update from 3.7 to 3.8

PR:		24371
Submitted by:	MAINTAINER
@
text
@d162 1
@


1.5
log
@Clean up this port so that it installs stuff in a more proper location
as per hier(7) and Porter's Handbook.

PR:		18929
Submitted by:	MAINTAINER
@
text
@d7 1
d16 1
d19 1
d29 1
d34 1
a50 21
share/tinker/bench/crambin.input
share/tinker/bench/crambin.key
share/tinker/bench/crambin.run
share/tinker/bench/crambin.xyz
share/tinker/bench/crystal.input
share/tinker/bench/crystal.key
share/tinker/bench/crystal.run
share/tinker/bench/crystal.xyz
share/tinker/bench/results-2.3
share/tinker/bench/results-2.4
share/tinker/bench/results-2.9
share/tinker/bench/results-3.1
share/tinker/bench/results-3.2
share/tinker/bench/results-3.4
share/tinker/bench/results-3.5
share/tinker/bench/results-3.7
share/tinker/bench/water.dyn0
share/tinker/bench/water.input
share/tinker/bench/water.key
share/tinker/bench/water.run
share/tinker/bench/water.xyz
d52 1
d54 1
a54 1
share/doc/tinker/guide.ps.Z
d57 1
a57 1
share/doc/tinker/license.ps.Z
d59 2
a60 2
share/doc/tinker/logo.ps.Z
share/doc/tinker/spine.ps
d65 1
a66 2
share/examples/tinker/anion.in1
share/examples/tinker/anion.in2
a71 2
share/examples/tinker/argon.in1
share/examples/tinker/argon.in2
d76 1
a76 1
share/examples/tinker/cluster.in1
a80 3
share/examples/tinker/crambin.in1
share/examples/tinker/crambin.in2
share/examples/tinker/crambin.in3
a86 3
share/examples/tinker/cyclohex.in1
share/examples/tinker/cyclohex.in2
share/examples/tinker/cyclohex.in3
d90 1
a90 3
share/examples/tinker/enkephalin.in1
share/examples/tinker/enkephalin.in2
share/examples/tinker/enkephalin.in3
d95 1
a95 4
share/examples/tinker/formamide.in1
share/examples/tinker/formamide.in2
share/examples/tinker/formamide.in3
share/examples/tinker/formamide.in4
d99 1
a99 1
share/examples/tinker/helix.in1
d103 31
a133 1
share/examples/tinker/helix.xyz
d136 1
d152 2
a153 7
share/tinker/test/annulene.int
share/tinker/test/annulene.key
share/tinker/test/annulene.xyz
share/tinker/test/annulene2.key
share/tinker/test/annulene2.xyz
share/tinker/test/annulene3.key
share/tinker/test/annulene3.xyz
d160 4
d173 7
d206 4
d213 1
d216 1
d219 1
d239 2
a244 2
share/tinker/test/enkephalin.pdb
share/tinker/test/enkephalin.run
d255 3
d264 6
a269 2
share/tinker/test/formamide.key
share/tinker/test/formamide.xyz
d277 7
d292 4
d301 4
d327 1
d333 7
d343 2
d367 2
a388 1
@@dirrm share/tinker/bench
d391 1
@


1.4
log
@Update to new version.

PR:		13459
Submitted by:	maintainer
@
text
@d67 66
a132 66
share/tinker/doc/README
share/tinker/doc/guide.pdf
share/tinker/doc/guide.ps.Z
share/tinker/doc/guide.txt
share/tinker/doc/license.pdf
share/tinker/doc/license.ps.Z
share/tinker/doc/license.txt
share/tinker/doc/logo.ps.Z
share/tinker/doc/spine.ps
share/tinker/doc/summary.pdf
share/tinker/doc/summary.ps
share/tinker/doc/summary.txt
share/tinker/example/README
share/tinker/example/anion.dyn0
share/tinker/example/anion.in1
share/tinker/example/anion.in2
share/tinker/example/anion.key
share/tinker/example/anion.log
share/tinker/example/anion.run
share/tinker/example/anion.xyz
share/tinker/example/argon.1st
share/tinker/example/argon.in1
share/tinker/example/argon.in2
share/tinker/example/argon.key
share/tinker/example/argon.log
share/tinker/example/argon.run
share/tinker/example/clean.make
share/tinker/example/cluster.in1
share/tinker/example/cluster.key
share/tinker/example/cluster.log
share/tinker/example/cluster.run
share/tinker/example/cluster.xyz
share/tinker/example/crambin.in1
share/tinker/example/crambin.in2
share/tinker/example/crambin.in3
share/tinker/example/crambin.key
share/tinker/example/crambin.log
share/tinker/example/crambin.pdb
share/tinker/example/crambin.run
share/tinker/example/cyclohex.boat
share/tinker/example/cyclohex.chair
share/tinker/example/cyclohex.in1
share/tinker/example/cyclohex.in2
share/tinker/example/cyclohex.in3
share/tinker/example/cyclohex.key
share/tinker/example/cyclohex.log
share/tinker/example/cyclohex.run
share/tinker/example/enkephalin.in1
share/tinker/example/enkephalin.in2
share/tinker/example/enkephalin.in3
share/tinker/example/enkephalin.key
share/tinker/example/enkephalin.log
share/tinker/example/enkephalin.run
share/tinker/example/formamide.cell
share/tinker/example/formamide.in1
share/tinker/example/formamide.in2
share/tinker/example/formamide.in3
share/tinker/example/formamide.in4
share/tinker/example/formamide.key
share/tinker/example/formamide.log
share/tinker/example/formamide.run
share/tinker/example/helix.in1
share/tinker/example/helix.key
share/tinker/example/helix.log
share/tinker/example/helix.run
share/tinker/example/helix.xyz
d341 2
a342 2
@@dirrm share/tinker/doc
@@dirrm share/tinker/example
@


1.3
log
@Fix port after distfile change.

PR:		12585
Submitted by:	maintainer
@
text
@a204 1
share/tinker/test/crambinx.ray
a210 1
share/tinker/test/cychept.pdb
a223 1
share/tinker/test/diwater.min
@


1.2
log
@Update tinker from version 3.6 to version 3.7

PR:	12301
Submitted by:	maintainer
@
text
@d72 1
a72 1
share/tinker/doc/license.ps
a73 1
share/tinker/doc/logo-bind.ps.Z
@


1.1
log
@Initial revision
@
text
@d27 1
d46 21
a66 15
share/tinker/params/README
share/tinker/params/amber.prm
share/tinker/params/charmm.prm
share/tinker/params/emr.prm
share/tinker/params/hoch.prm
share/tinker/params/merck.prm
share/tinker/params/mm2.prm
share/tinker/params/mm3.prm
share/tinker/params/mm3pro.prm
share/tinker/params/mmffpro.prm
share/tinker/params/opls.prm
share/tinker/params/oplsaa.prm
share/tinker/params/smooth.prm
share/tinker/params/tinker.prm
share/tinker/params/water.prm
d68 1
d71 1
d74 1
d77 1
a79 1
share/tinker/tinker.txt
d129 19
a147 20
share/tinker/bench/crambin.input
share/tinker/bench/crambin.key
share/tinker/bench/crambin.run
share/tinker/bench/crambin.xyz
share/tinker/bench/crystal.input
share/tinker/bench/crystal.key
share/tinker/bench/crystal.run
share/tinker/bench/crystal.xyz
share/tinker/bench/results-2.3
share/tinker/bench/results-2.4
share/tinker/bench/results-2.9
share/tinker/bench/results-3.1
share/tinker/bench/results-3.2
share/tinker/bench/results-3.4
share/tinker/bench/results-3.5
share/tinker/bench/water.dyn0
share/tinker/bench/water.input
share/tinker/bench/water.key
share/tinker/bench/water.run
share/tinker/bench/water.xyz
a159 1
share/tinker/test/arach.xmol
a163 1
share/tinker/test/bearing.big
d167 3
a189 1
share/tinker/test/c5.int
d191 1
a192 1
share/tinker/test/c7ax.int
d194 1
a195 1
share/tinker/test/c7eq.int
d197 1
a200 1
share/tinker/test/crambin.int
d206 1
d213 1
a220 1
share/tinker/test/nma.int
d227 1
a227 1
share/tinker/test/diwater.lin
d233 1
d239 2
d250 2
d272 1
a298 4
share/tinker/test/photo.key
share/tinker/test/photo.pdb
share/tinker/test/photo.seq
share/tinker/test/photo.xyz
d343 2
a344 1
@@dirrm share/tinker/params
d347 1
a347 1
@@dirrm share/tinker/bench
@


1.1.1.1
log
@New port of the Tinker Molecular modelling program.

PR:		8690
Reviewed by:	jkoshy
Submitted by:	Glenn Johnson <gljohns@@bellsouth.net>
@
text
@@
