bin/abba-baba
bin/bFst
bin/dumpContigsFromHeader
bin/genotypeSummary
bin/hapLrt
bin/iHS
bin/meltEHH
bin/normalize-iHS
bin/pFst
bin/pVst
bin/permuteGPAT++
bin/permuteSmooth
bin/plotHaps
bin/popStats
bin/segmentFst
bin/segmentIhs
bin/sequenceDiversity
bin/smoother
bin/vcf2dag
bin/vcf2fasta
bin/vcf2tsv
bin/vcfaddinfo
bin/vcfafpath
bin/vcfallelicprimitives
bin/vcfaltcount
bin/vcfannotate
bin/vcfannotategenotypes
bin/vcfbreakmulti
bin/vcfcat
bin/vcfcheck
bin/vcfclassify
bin/vcfcleancomplex
bin/vcfcombine
bin/vcfcommonsamples
bin/vcfcountalleles
bin/vcfcreatemulti
bin/vcfdistance
bin/vcfecho
bin/vcfentropy
bin/vcfevenregions
bin/vcffilter
bin/vcffixup
bin/vcfflatten
bin/vcfgeno2alleles
bin/vcfgeno2haplo
bin/vcfgenosamplenames
bin/vcfgenosummarize
bin/vcfgenotypecompare
bin/vcfgenotypes
bin/vcfglbound
bin/vcfglxgt
bin/vcfhetcount
bin/vcfhethomratio
bin/vcfindex
bin/vcfinfo2qual
bin/vcfinfosummarize
bin/vcfintersect
bin/vcfkeepgeno
bin/vcfkeepinfo
bin/vcfkeepsamples
bin/vcfld
bin/vcfleftalign
bin/vcflength
bin/vcfnumalt
bin/vcfoverlay
bin/vcfparsealts
bin/vcfprimers
bin/vcfqual2info
bin/vcfrandom
bin/vcfrandomsample
bin/vcfremap
bin/vcfremoveaberrantgenotypes
bin/vcfremovesamples
bin/vcfroc
bin/vcfsample2info
bin/vcfsamplediff
bin/vcfsamplenames
bin/vcfsitesummarize
bin/vcfstats
bin/vcfstreamsort
bin/vcfuniq
bin/vcfuniqalleles
bin/wcFst
include/BandedSmithWaterman.h
include/BedReader.h
include/Fasta.h
include/IndelAllele.h
include/IntervalTree.h
include/LargeFileSupport.h
include/LeftAlign.h
include/Mosaik.h
include/Region.h
include/Repeats.h
include/SmithWatermanGotoh.h
include/Variant.h
include/catch.hpp
include/cdflib.hpp
include/convert.h
include/disorder.h
include/filevercmp.h
include/gpatInfo.hpp
include/join.h
include/mt19937ar.h
include/multichoose.h
include/multipermute.h
include/pdflib.hpp
include/rnglib.hpp
include/split.h
include/ssw.hpp
include/ssw_cpp.hpp
include/var.hpp
include/vec128int.h
include/veclib_types.h
lib/libvcflib.a
man/man1/man/abba-baba.1.gz
man/man1/man/bFst.1.gz
man/man1/man/dumpContigsFromHeader.1.gz
man/man1/man/genotypeSummary.1.gz
man/man1/man/hapLrt.1.gz
man/man1/man/iHS.1.gz
man/man1/man/meltEHH.1.gz
man/man1/man/normalize-iHS.1.gz
man/man1/man/pFst.1.gz
man/man1/man/pVst.1.gz
man/man1/man/permuteGPAT++.1.gz
man/man1/man/permuteSmooth.1.gz
man/man1/man/plotHaps.1.gz
man/man1/man/popStats.1.gz
man/man1/man/segmentFst.1.gz
man/man1/man/segmentIhs.1.gz
man/man1/man/sequenceDiversity.1.gz
man/man1/man/smoother.1.gz
man/man1/man/vcf2dag.1.gz
man/man1/man/vcf2fasta.1.gz
man/man1/man/vcf2tsv.1.gz
man/man1/man/vcfaddinfo.1.gz
man/man1/man/vcfafpath.1.gz
man/man1/man/vcfallelicprimitives.1.gz
man/man1/man/vcfaltcount.1.gz
man/man1/man/vcfannotate.1.gz
man/man1/man/vcfannotategenotypes.1.gz
man/man1/man/vcfbreakmulti.1.gz
man/man1/man/vcfcat.1.gz
man/man1/man/vcfcheck.1.gz
man/man1/man/vcfclassify.1.gz
man/man1/man/vcfcleancomplex.1.gz
man/man1/man/vcfcombine.1.gz
man/man1/man/vcfcommonsamples.1.gz
man/man1/man/vcfcountalleles.1.gz
man/man1/man/vcfcreatemulti.1.gz
man/man1/man/vcfdistance.1.gz
man/man1/man/vcfecho.1.gz
man/man1/man/vcfentropy.1.gz
man/man1/man/vcfevenregions.1.gz
man/man1/man/vcffilter.1.gz
man/man1/man/vcffixup.1.gz
man/man1/man/vcfflatten.1.gz
man/man1/man/vcfgeno2alleles.1.gz
man/man1/man/vcfgeno2haplo.1.gz
man/man1/man/vcfgenosamplenames.1.gz
man/man1/man/vcfgenosummarize.1.gz
man/man1/man/vcfgenotypecompare.1.gz
man/man1/man/vcfgenotypes.1.gz
man/man1/man/vcfglbound.1.gz
man/man1/man/vcfglxgt.1.gz
man/man1/man/vcfhetcount.1.gz
man/man1/man/vcfhethomratio.1.gz
man/man1/man/vcfindex.1.gz
man/man1/man/vcfinfo2qual.1.gz
man/man1/man/vcfinfosummarize.1.gz
man/man1/man/vcfintersect.1.gz
man/man1/man/vcfkeepgeno.1.gz
man/man1/man/vcfkeepinfo.1.gz
man/man1/man/vcfkeepsamples.1.gz
man/man1/man/vcfld.1.gz
man/man1/man/vcfleftalign.1.gz
man/man1/man/vcflength.1.gz
man/man1/man/vcflib.1.gz
man/man1/man/vcfnumalt.1.gz
man/man1/man/vcfoverlay.1.gz
man/man1/man/vcfparsealts.1.gz
man/man1/man/vcfprimers.1.gz
man/man1/man/vcfqual2info.1.gz
man/man1/man/vcfrandom.1.gz
man/man1/man/vcfrandomsample.1.gz
man/man1/man/vcfremap.1.gz
man/man1/man/vcfremoveaberrantgenotypes.1.gz
man/man1/man/vcfremovesamples.1.gz
man/man1/man/vcfroc.1.gz
man/man1/man/vcfsample2info.1.gz
man/man1/man/vcfsamplediff.1.gz
man/man1/man/vcfsamplenames.1.gz
man/man1/man/vcfsitesummarize.1.gz
man/man1/man/vcfstats.1.gz
man/man1/man/vcfstreamsort.1.gz
man/man1/man/vcfuniq.1.gz
man/man1/man/vcfuniqalleles.1.gz
man/man1/man/wcFst.1.gz
