
Nucleic acid sequence
   Maximum Likelihood method with molecular clock, version 3.7a

 5 species,  13  sites

Name            Sequences
----            ---------

Alpha        AACGTGGCCA AAT
Beta         ..G..C.... ..C
Gamma        C.TT.C.T.. C.A
Delta        GGTA.TT.GG CC.
Epsilon      GGGA.CT.GG CCC



Empirical Base Frequencies:

   A       0.24615
   C       0.29231
   G       0.24615
  T(U)     0.21538

Transition/transversion ratio =   2.000000





                                           +----Epsilon   
  +----------------------------------------4  
  !                                        +----Delta     
--3  
  !                         +------------------Gamma     
  +-------------------------2  
                            !             +----Beta      
                            +-------------1  
                                          +----Alpha     


Ln Likelihood =   -73.08941

 Ancestor      Node      Node Height     Length
 --------      ----      ---- ------     ------
 root            3      
   3             4          1.21171      1.21171
   4          Epsilon       1.35166      0.13996
   4          Delta         1.35166      0.13996
   3             2          0.78116      0.78116
   2          Gamma         1.35166      0.57050
   2             1          1.19841      0.41724
   1          Beta          1.35166      0.15326
   1          Alpha         1.35166      0.15326



Probable sequences at interior nodes:

  node       Reconstructed sequence (caps if > 0.95)

    3        ratrtcgcca cay
    4        GGtATtTCGG CCt
 Epsilon     GGGATCTCGG CCC
 Delta       GGTATTTCGG CCT
    2        aAtgTCGcCA cAy
 Gamma       CATTTCGTCA CAA
    1        AAcGTcGCCA AAt
 Beta        AAGGTCGCCA AAC
 Alpha       AACGTGGCCA AAT

